Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36789 * 125.07428 * 2 1 4 4 C 1.50700 * 125.03997 * 0.03038 * 3 2 1 5 5 H 1.09002 * 109.46982 * 25.00555 * 4 3 2 6 6 N 1.46895 * 109.47324 * 145.00480 * 4 3 2 7 7 C 1.50701 * 109.47278 * 265.00690 * 4 3 2 8 8 H 1.07993 * 120.00248 * 359.97438 * 7 4 3 9 9 C 1.37881 * 119.99718 * 179.97438 * 7 4 3 10 10 N 1.31516 * 120.00141 * 0.02562 * 9 7 4 11 11 Si 1.86795 * 119.99862 * 180.02562 * 9 7 4 12 12 H 1.48498 * 109.47561 * 90.00017 * 11 9 7 13 13 H 1.48505 * 109.47389 * 210.00443 * 11 9 7 14 14 H 1.48505 * 109.47211 * 330.00095 * 11 9 7 15 15 C 1.34248 * 109.92491 * 180.02562 * 3 2 1 16 16 C 1.46482 * 107.01141 * 359.97438 * 15 3 2 17 17 C 1.39696 * 134.01004 * 180.02562 * 16 15 3 18 18 C 1.36607 * 119.80626 * 180.02562 * 17 16 15 19 19 C 1.38840 * 120.54401 * 359.78834 * 18 17 16 20 20 C 1.37939 * 120.63614 * 0.44826 * 19 18 17 21 21 F 1.35104 * 120.12805 * 179.80633 * 20 19 18 22 22 C 1.37778 * 125.06831 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47770 * 270.00722 * 1 2 3 24 24 H 1.09004 * 109.47234 * 30.00466 * 1 2 3 25 25 H 1.09000 * 109.47516 * 150.00189 * 1 2 3 26 26 H 1.00901 * 111.00052 * 60.00417 * 6 4 3 27 27 H 1.00899 * 111.00412 * 183.96000 * 6 4 3 28 28 H 0.96994 * 120.00161 * 179.97438 * 10 9 7 29 29 H 1.08001 * 126.49778 * 179.97438 * 15 3 2 30 30 H 1.08001 * 120.09961 * 359.97438 * 17 16 15 31 31 H 1.08003 * 119.72477 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.68015 * 180.26152 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1195 0.0000 4 6 1.7384 2.5366 0.0007 5 1 0.7392 2.5614 0.4355 6 7 2.6391 3.3828 0.7948 7 6 1.6832 3.0515 -1.4146 8 1 1.9891 2.4164 -2.2326 9 6 1.2421 4.3337 -1.6649 10 7 0.8700 5.1074 -0.6687 11 14 1.1730 4.9717 -3.4192 12 1 -0.1568 4.6660 -4.0052 13 1 1.3885 6.4410 -3.4204 14 1 2.2324 4.3154 -4.2268 15 6 3.5468 0.7687 -0.0006 16 6 3.5944 -0.6954 -0.0003 17 6 4.6301 -1.6328 -0.0002 18 6 4.3382 -2.9673 -0.0005 19 6 3.0192 -3.4010 0.0035 20 6 1.9807 -2.4932 -0.0015 21 9 0.7011 -2.9266 -0.0015 22 6 2.2566 -1.1277 -0.0005 23 1 -0.3634 0.0001 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 3.5725 3.3766 0.4116 27 1 2.2830 4.3243 0.8644 28 1 0.5601 6.0095 -0.8447 29 1 4.3938 1.4388 -0.0011 30 1 5.6587 -1.3035 -0.0007 31 1 5.1399 -3.6909 0.0000 32 1 2.8043 -4.4595 0.0075 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259557302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = 8.013483 kcal Electronic energy + Delta-G solvation = -17716.949225 eV Core-core repulsion = 14785.011969 eV Total energy + Delta-G solvation = -2931.937256 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.57567 -40.76142 -36.89745 -34.60363 -32.15668 -31.26477 -29.69680 -28.27575 -26.15424 -25.56817 -23.22957 -21.53895 -21.04691 -18.84861 -17.09145 -16.70296 -16.52339 -15.61350 -15.52402 -15.12296 -14.57642 -14.37226 -14.24860 -13.19539 -13.00198 -12.86231 -12.66096 -12.32920 -12.25418 -11.88464 -11.36400 -11.18987 -11.07428 -10.98945 -10.81932 -10.68761 -10.11155 -9.90418 -9.02743 -8.78949 -7.72170 -7.35235 -7.02655 -6.23999 -4.42143 1.38323 1.87130 3.14289 3.22058 3.24731 3.30560 3.39771 4.15536 4.23793 4.57500 4.96566 5.00456 5.17506 5.29424 5.44017 5.62412 5.67244 5.87885 5.94928 6.00921 6.22290 6.37387 6.47553 6.60702 6.64562 6.86727 6.97759 7.19396 7.48584 7.61226 7.72364 7.85944 7.97108 8.50303 8.76693 8.97507 9.31071 10.73369 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.006405 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.953841 B = 4370.194577 C = 4597.703887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.473 5.473 3 C 0.157 3.843 4 C 0.263 3.737 5 H 0.048 0.952 6 N -0.844 5.844 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.069 3.931 10 N -0.891 5.891 11 Si 0.901 3.099 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.272 1.272 15 C -0.223 4.223 16 C -0.074 4.074 17 C -0.085 4.085 18 C -0.132 4.132 19 C -0.154 4.154 20 C 0.087 3.913 21 F -0.150 7.150 22 C 0.052 3.948 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.318 0.682 27 H 0.360 0.640 28 H 0.268 0.732 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -10.682 1.194 11.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.156 5.156 3 C 0.049 3.951 4 C 0.152 3.848 5 H 0.066 0.934 6 N -0.375 5.375 7 C -0.588 4.588 8 H 0.077 0.923 9 C -0.134 4.134 10 N -0.530 5.530 11 Si 0.728 3.272 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.197 1.197 15 C -0.246 4.246 16 C -0.080 4.080 17 C -0.104 4.104 18 C -0.152 4.152 19 C -0.174 4.174 20 C 0.065 3.935 21 F -0.129 7.129 22 C -0.055 4.055 23 H 0.082 0.918 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.128 0.872 27 H 0.177 0.823 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.304 -10.955 1.858 11.348 hybrid contribution -0.382 0.827 -1.898 2.105 sum 1.923 -10.128 -0.040 10.309 Atomic orbital electron populations 1.21993 0.77348 1.04525 1.02704 1.43793 1.05955 1.03609 1.62223 1.21279 0.89769 0.89352 0.94743 1.17617 0.92877 0.81674 0.92596 0.93421 1.59325 1.04970 1.18238 1.55011 1.21746 1.45325 0.98886 0.92880 0.92306 1.25004 0.94005 0.96607 0.97797 1.69730 1.43473 1.08863 1.30932 0.86447 0.78659 0.77995 0.84119 1.20472 1.20939 1.19698 1.21212 0.95988 0.90944 1.16448 1.19215 0.90711 0.94341 1.03761 1.20264 0.98057 0.91860 1.00194 1.20293 0.95155 0.95478 1.04281 1.20589 0.91859 0.98390 1.06538 1.16685 0.78747 0.88899 1.09173 1.91412 1.36581 1.90267 1.94607 1.18202 0.91862 0.86841 1.08634 0.91752 0.88623 0.90621 0.87247 0.82279 0.92179 0.83763 0.85924 0.85832 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.37 59.84 0.62 1.94 16 2 N -0.47 -9.64 3.18 -117.15 -0.37 -10.01 16 3 C 0.16 3.46 5.83 -81.79 -0.48 2.98 16 4 C 0.26 6.31 2.72 -70.02 -0.19 6.12 16 5 H 0.05 1.23 7.34 -51.93 -0.38 0.85 16 6 N -0.84 -19.41 9.03 -6.65 -0.06 -19.47 16 7 C -0.55 -14.16 8.71 -34.44 -0.30 -14.46 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.07 1.78 5.38 -17.82 -0.10 1.68 16 10 N -0.89 -23.38 11.54 55.43 0.64 -22.74 16 11 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C -0.22 -4.58 10.33 -37.67 -0.39 -4.97 16 16 C -0.07 -1.42 6.37 -105.14 -0.67 -2.09 16 17 C -0.09 -1.32 10.05 -39.63 -0.40 -1.72 16 18 C -0.13 -1.81 9.97 -39.95 -0.40 -2.21 16 19 C -0.15 -2.24 9.99 -39.47 -0.39 -2.63 16 20 C 0.09 1.50 7.32 -39.29 -0.29 1.21 16 21 F -0.15 -2.53 15.83 2.25 0.04 -2.49 16 22 C 0.05 1.01 6.82 -83.91 -0.57 0.44 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.10 1.72 7.40 -51.93 -0.38 1.34 16 25 H 0.08 1.19 6.96 -51.93 -0.36 0.82 16 26 H 0.32 6.94 7.94 -39.29 -0.31 6.63 16 27 H 0.36 8.77 7.08 -39.29 -0.28 8.49 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.14 2.78 7.39 -52.49 -0.39 2.39 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 276.76 15.07 4.17 4.17 Total: -1.00 -27.28 276.76 -7.50 -34.78 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -3.34 Total: 14.22 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.55 Total: -13.70 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.21 Total: -52.22 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.28 -7.50 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259557302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.790 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds