Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36789 * 125.07428 * 2 1 4 4 C 1.50700 * 125.03997 * 0.03038 * 3 2 1 5 5 H 1.09002 * 109.46982 * 25.00555 * 4 3 2 6 6 N 1.46895 * 109.47324 * 145.00480 * 4 3 2 7 7 C 1.50701 * 109.47278 * 265.00690 * 4 3 2 8 8 H 1.07993 * 120.00248 * 359.97438 * 7 4 3 9 9 C 1.37881 * 119.99718 * 179.97438 * 7 4 3 10 10 N 1.31516 * 120.00141 * 0.02562 * 9 7 4 11 11 Si 1.86795 * 119.99862 * 180.02562 * 9 7 4 12 12 H 1.48498 * 109.47561 * 90.00017 * 11 9 7 13 13 H 1.48505 * 109.47389 * 210.00443 * 11 9 7 14 14 H 1.48505 * 109.47211 * 330.00095 * 11 9 7 15 15 C 1.34248 * 109.92491 * 180.02562 * 3 2 1 16 16 C 1.46482 * 107.01141 * 359.97438 * 15 3 2 17 17 C 1.39696 * 134.01004 * 180.02562 * 16 15 3 18 18 C 1.36607 * 119.80626 * 180.02562 * 17 16 15 19 19 C 1.38840 * 120.54401 * 359.78834 * 18 17 16 20 20 C 1.37939 * 120.63614 * 0.44826 * 19 18 17 21 21 F 1.35104 * 120.12805 * 179.80633 * 20 19 18 22 22 C 1.37778 * 125.06831 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47770 * 270.00722 * 1 2 3 24 24 H 1.09004 * 109.47234 * 30.00466 * 1 2 3 25 25 H 1.09000 * 109.47516 * 150.00189 * 1 2 3 26 26 H 1.00901 * 111.00052 * 60.00417 * 6 4 3 27 27 H 1.00899 * 111.00412 * 183.96000 * 6 4 3 28 28 H 0.96994 * 120.00161 * 179.97438 * 10 9 7 29 29 H 1.08001 * 126.49778 * 179.97438 * 15 3 2 30 30 H 1.08001 * 120.09961 * 359.97438 * 17 16 15 31 31 H 1.08003 * 119.72477 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.68015 * 180.26152 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1195 0.0000 4 6 1.7384 2.5366 0.0007 5 1 0.7392 2.5614 0.4355 6 7 2.6391 3.3828 0.7948 7 6 1.6832 3.0515 -1.4146 8 1 1.9891 2.4164 -2.2326 9 6 1.2421 4.3337 -1.6649 10 7 0.8700 5.1074 -0.6687 11 14 1.1730 4.9717 -3.4192 12 1 -0.1568 4.6660 -4.0052 13 1 1.3885 6.4410 -3.4204 14 1 2.2324 4.3154 -4.2268 15 6 3.5468 0.7687 -0.0006 16 6 3.5944 -0.6954 -0.0003 17 6 4.6301 -1.6328 -0.0002 18 6 4.3382 -2.9673 -0.0005 19 6 3.0192 -3.4010 0.0035 20 6 1.9807 -2.4932 -0.0015 21 9 0.7011 -2.9266 -0.0015 22 6 2.2566 -1.1277 -0.0005 23 1 -0.3634 0.0001 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 3.5725 3.3766 0.4116 27 1 2.2830 4.3243 0.8644 28 1 0.5601 6.0095 -0.8447 29 1 4.3938 1.4388 -0.0011 30 1 5.6587 -1.3035 -0.0007 31 1 5.1399 -3.6909 0.0000 32 1 2.8043 -4.4595 0.0075 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259557302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = -7.937214 kcal Electronic energy + Delta-G solvation = -17717.640899 eV Core-core repulsion = 14785.011969 eV Total energy + Delta-G solvation = -2932.628930 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85026 -42.18735 -38.23935 -36.41167 -33.75582 -32.99482 -30.97456 -29.75316 -28.02915 -26.99864 -24.91949 -22.84731 -22.47175 -20.41642 -18.65987 -18.48167 -17.88668 -17.10551 -16.89161 -16.56840 -16.26046 -15.80557 -15.57547 -14.86186 -14.66089 -14.52930 -13.93079 -13.90385 -13.65704 -13.29130 -13.18956 -12.83832 -12.79205 -12.42382 -12.22896 -12.17202 -11.82545 -11.74028 -10.77946 -10.37742 -9.34543 -9.04898 -8.46422 -8.17798 -6.46210 0.09135 0.61485 1.34628 1.37648 1.47076 1.83217 1.87796 2.34714 2.88172 2.98886 3.31470 3.71498 3.87031 3.97678 4.07674 4.29726 4.41492 4.49635 4.53358 4.63391 4.72086 4.93406 5.02592 5.16335 5.31144 5.34194 5.57296 5.63338 5.86531 5.89226 6.06418 6.31160 6.38713 6.54028 6.82884 7.05301 7.31220 8.75020 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.006405 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.953841 B = 4370.194577 C = 4597.703887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.485 5.485 3 C 0.122 3.878 4 C 0.272 3.728 5 H 0.019 0.981 6 N -0.837 5.837 7 C -0.561 4.561 8 H 0.043 0.957 9 C 0.031 3.969 10 N -0.911 5.911 11 Si 0.959 3.041 12 H -0.277 1.277 13 H -0.276 1.276 14 H -0.274 1.274 15 C -0.226 4.226 16 C -0.100 4.100 17 C -0.085 4.085 18 C -0.119 4.119 19 C -0.134 4.134 20 C 0.062 3.938 21 F -0.152 7.152 22 C 0.030 3.970 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.324 0.676 27 H 0.351 0.649 28 H 0.271 0.729 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.170 0.830 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -12.844 0.716 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.168 5.168 3 C 0.014 3.986 4 C 0.161 3.839 5 H 0.037 0.963 6 N -0.367 5.367 7 C -0.601 4.601 8 H 0.061 0.939 9 C -0.171 4.171 10 N -0.549 5.549 11 Si 0.785 3.215 12 H -0.202 1.202 13 H -0.201 1.201 14 H -0.199 1.199 15 C -0.250 4.250 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.138 4.138 19 C -0.154 4.154 20 C 0.040 3.960 21 F -0.131 7.131 22 C -0.076 4.076 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.134 0.866 27 H 0.167 0.833 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.188 0.812 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.733 -13.133 1.386 13.723 hybrid contribution -0.755 1.346 -1.717 2.308 sum 2.977 -11.787 -0.330 12.162 Atomic orbital electron populations 1.22028 0.76603 1.04393 1.03367 1.43890 1.06612 1.03630 1.62716 1.20980 0.90786 0.88921 0.97924 1.17326 0.91764 0.83393 0.91452 0.96320 1.59290 1.05111 1.17469 1.54842 1.21859 1.45701 0.99103 0.93431 0.93854 1.25656 0.93603 0.96687 1.01129 1.69811 1.43654 1.09089 1.32377 0.85541 0.78412 0.77600 0.79994 1.20227 1.20136 1.19921 1.21392 0.95510 0.92490 1.15560 1.19460 0.91767 0.93857 1.05448 1.20672 0.98479 0.92175 0.98984 1.20836 0.95980 0.95464 1.01500 1.21138 0.91466 0.99669 1.03111 1.17002 0.79558 0.88517 1.10920 1.91400 1.36827 1.90088 1.94788 1.18637 0.92136 0.87516 1.09334 0.90718 0.90236 0.89116 0.86586 0.83294 0.91934 0.83365 0.83334 0.81228 0.81905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.80 10.37 127.77 1.32 4.12 16 2 N -0.49 -20.31 3.18 -524.54 -1.67 -21.98 16 3 C 0.12 5.58 5.83 40.87 0.24 5.82 16 4 C 0.27 13.61 2.72 43.42 0.12 13.73 16 5 H 0.02 1.03 7.34 -2.39 -0.02 1.01 16 6 N -0.84 -39.77 9.03 -174.96 -1.58 -41.35 16 7 C -0.56 -29.94 8.71 25.60 0.22 -29.72 16 8 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 9 C 0.03 1.60 5.38 84.66 0.46 2.05 16 10 N -0.91 -48.63 11.54 21.45 0.25 -48.38 16 11 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 C -0.23 -9.42 10.33 23.51 0.24 -9.18 16 16 C -0.10 -3.70 6.37 -20.20 -0.13 -3.83 16 17 C -0.08 -2.34 10.05 22.24 0.22 -2.12 16 18 C -0.12 -2.64 9.97 22.03 0.22 -2.42 16 19 C -0.13 -3.34 9.99 22.34 0.22 -3.11 16 20 C 0.06 2.02 7.32 22.46 0.16 2.18 16 21 F -0.15 -4.92 15.83 44.97 0.71 -4.21 16 22 C 0.03 1.17 6.82 39.04 0.27 1.44 16 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.08 3.07 7.40 -2.38 -0.02 3.05 16 25 H 0.09 2.91 6.96 -2.39 -0.02 2.89 16 26 H 0.32 14.53 7.94 -89.69 -0.71 13.82 16 27 H 0.35 17.66 7.08 -89.69 -0.63 17.03 16 28 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 29 H 0.15 5.79 7.39 -2.91 -0.02 5.77 16 30 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -59.83 276.76 3.13 -56.71 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -0.18 Total: 36.25 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.57 Total: -21.04 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -3.00 Total: -111.70 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.71 Total: -4.21 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -59.83 3.13 -56.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259557302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.771 kcal (2) G-P(sol) polarization free energy of solvation -59.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds