Wall clock time and date at job start Mon Mar 30 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36790 * 125.06438 * 2 1 4 4 C 1.50696 * 125.04713 * 0.02562 * 3 2 1 5 5 H 1.09000 * 109.47004 * 335.22859 * 4 3 2 6 6 N 1.46896 * 109.47368 * 215.22407 * 4 3 2 7 7 C 1.50700 * 109.46881 * 95.22212 * 4 3 2 8 8 H 1.08005 * 120.00296 * 0.02562 * 7 4 3 9 9 C 1.37872 * 120.00001 * 180.02562 * 7 4 3 10 10 N 1.31517 * 120.00301 * 0.02562 * 9 7 4 11 11 Si 1.86801 * 120.00180 * 180.02562 * 9 7 4 12 12 H 1.48500 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47549 * 120.00049 * 11 9 7 14 14 H 1.48505 * 109.46961 * 239.99891 * 11 9 7 15 15 C 1.34262 * 109.91712 * 180.02562 * 3 2 1 16 16 C 1.46476 * 107.00764 * 359.97438 * 15 3 2 17 17 C 1.39708 * 134.00388 * 180.02562 * 16 15 3 18 18 C 1.36595 * 119.80475 * 179.97438 * 17 16 15 19 19 C 1.38838 * 120.55087 * 359.79094 * 18 17 16 20 20 C 1.37943 * 120.63162 * 0.44848 * 19 18 17 21 21 F 1.35101 * 120.12874 * 179.80605 * 20 19 18 22 22 C 1.37776 * 125.07494 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46963 * 267.28926 * 1 2 3 24 24 H 1.08995 * 109.47479 * 27.29498 * 1 2 3 25 25 H 1.09012 * 109.46830 * 147.29648 * 1 2 3 26 26 H 1.00893 * 111.00354 * 295.06308 * 6 4 3 27 27 H 1.00901 * 110.99907 * 59.02221 * 6 4 3 28 28 H 0.96999 * 120.00206 * 179.97438 * 10 9 7 29 29 H 1.07996 * 126.49093 * 180.02562 * 15 3 2 30 30 H 1.07996 * 120.09849 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.72654 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.69220 * 180.25887 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.1196 0.0000 4 6 1.7382 2.5367 0.0006 5 1 0.7370 2.5610 -0.4297 6 7 2.6352 3.3823 -0.7984 7 6 1.6895 3.0527 1.4156 8 1 1.9992 2.4180 2.2329 9 6 1.2495 4.3349 1.6671 10 7 0.8719 5.1076 0.6721 11 14 1.1898 4.9747 3.4211 12 1 1.6634 3.9174 4.3501 13 1 2.0640 6.1689 3.5425 14 1 -0.2063 5.3463 3.7652 15 6 3.5469 0.7688 -0.0006 16 6 3.5944 -0.6952 -0.0003 17 6 4.6303 -1.6326 -0.0002 18 6 4.3384 -2.9670 0.0005 19 6 3.0196 -3.4009 0.0056 20 6 1.9810 -2.4931 0.0006 21 9 0.7014 -2.9266 0.0016 22 6 2.2568 -1.1276 -0.0005 23 1 -0.3633 -0.0486 1.0265 24 1 -0.3634 0.9132 -0.4712 25 1 -0.3633 -0.8649 -0.5553 26 1 3.5492 3.4409 -0.3750 27 1 2.6974 3.0472 -1.7481 28 1 0.5620 6.0095 0.8491 29 1 4.3937 1.4391 -0.0003 30 1 5.6588 -1.3032 -0.0007 31 1 5.1402 -3.6906 0.0010 32 1 2.8047 -4.4593 0.0103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259557310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:20 Heat of formation + Delta-G solvation = -2.697430 kcal Electronic energy + Delta-G solvation = -17717.026649 eV Core-core repulsion = 14784.624933 eV Total energy + Delta-G solvation = -2932.401716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.87722 -42.23499 -38.27440 -36.20479 -33.83933 -33.08972 -31.00288 -29.70345 -28.06099 -27.01658 -24.81669 -22.86287 -22.51596 -20.48982 -18.59886 -18.42671 -17.88103 -16.95892 -16.90735 -16.53769 -16.29756 -15.79433 -15.66960 -15.45146 -14.74147 -14.27511 -13.99317 -13.91083 -13.66494 -13.32574 -13.11824 -12.77163 -12.67739 -12.46345 -12.25281 -12.13903 -11.82097 -11.28303 -10.62283 -10.42001 -9.25500 -9.00808 -8.48163 -8.05291 -6.28137 0.04692 0.57854 1.39724 1.42787 1.52533 1.75079 1.88624 2.44378 2.83705 3.18889 3.28477 3.68560 3.84305 3.96494 4.04001 4.24346 4.39827 4.44338 4.50703 4.56100 4.69143 4.82222 4.98038 5.12533 5.27242 5.29822 5.58843 5.68709 5.82782 5.91338 6.05624 6.25143 6.35294 6.57562 6.98486 7.17395 7.44936 8.97597 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.006414 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.858132 B = 4364.649973 C = 4587.722050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.483 5.483 3 C 0.085 3.915 4 C 0.285 3.715 5 H 0.021 0.979 6 N -0.807 5.807 7 C -0.544 4.544 8 H 0.041 0.959 9 C 0.043 3.957 10 N -0.874 5.874 11 Si 0.948 3.052 12 H -0.276 1.276 13 H -0.277 1.277 14 H -0.279 1.279 15 C -0.238 4.238 16 C -0.099 4.099 17 C -0.086 4.086 18 C -0.118 4.118 19 C -0.135 4.135 20 C 0.062 3.938 21 F -0.152 7.152 22 C 0.028 3.972 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.330 0.670 27 H 0.314 0.686 28 H 0.259 0.741 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.782 -14.273 -2.128 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.165 5.165 3 C -0.025 4.025 4 C 0.173 3.827 5 H 0.039 0.961 6 N -0.334 5.334 7 C -0.583 4.583 8 H 0.059 0.941 9 C -0.162 4.162 10 N -0.510 5.510 11 Si 0.774 3.226 12 H -0.200 1.200 13 H -0.203 1.203 14 H -0.205 1.205 15 C -0.262 4.262 16 C -0.104 4.104 17 C -0.104 4.104 18 C -0.137 4.137 19 C -0.154 4.154 20 C 0.040 3.960 21 F -0.131 7.131 22 C -0.078 4.078 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.142 0.858 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.759 -13.455 -2.048 14.120 hybrid contribution -0.156 -0.142 0.785 0.813 sum 3.603 -13.597 -1.263 14.123 Atomic orbital electron populations 1.22009 0.76514 1.04302 1.03339 1.44029 1.06685 1.03679 1.62133 1.22654 0.91260 0.90717 0.97916 1.17571 0.91967 0.79437 0.93706 0.96147 1.59109 1.15395 1.55253 1.03606 1.20975 1.47048 0.99146 0.91147 0.94084 1.25586 0.93890 0.96796 0.99930 1.70207 1.41074 1.07860 1.31811 0.85689 0.77765 0.78238 0.80916 1.20033 1.20298 1.20464 1.21417 0.95467 0.92725 1.16602 1.19429 0.91731 0.93848 1.05414 1.20668 0.98479 0.92194 0.99093 1.20836 0.95981 0.95502 1.01401 1.21148 0.91488 0.99709 1.03086 1.17026 0.79561 0.88616 1.10773 1.91404 1.36815 1.90100 1.94762 1.18697 0.92203 0.87637 1.09293 0.91375 0.89811 0.89036 0.85755 0.87427 0.93175 0.83353 0.83382 0.81264 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.80 10.58 127.77 1.35 4.15 16 2 N -0.48 -19.51 3.18 -524.52 -1.67 -21.18 16 3 C 0.09 3.72 5.79 40.88 0.24 3.96 16 4 C 0.28 13.93 2.84 43.42 0.12 14.05 16 5 H 0.02 1.11 6.72 -2.39 -0.02 1.09 16 6 N -0.81 -36.98 8.35 -174.97 -1.46 -38.44 16 7 C -0.54 -29.54 8.67 25.60 0.22 -29.31 16 8 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 9 C 0.04 2.32 5.39 84.65 0.46 2.77 16 10 N -0.87 -49.53 12.77 21.45 0.27 -49.26 16 11 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 15 C -0.24 -9.45 10.37 23.51 0.24 -9.21 16 16 C -0.10 -3.54 6.37 -20.20 -0.13 -3.67 16 17 C -0.09 -2.30 10.05 22.24 0.22 -2.08 16 18 C -0.12 -2.56 9.97 22.03 0.22 -2.34 16 19 C -0.13 -3.27 9.99 22.34 0.22 -3.05 16 20 C 0.06 1.98 7.32 22.46 0.16 2.15 16 21 F -0.15 -4.83 15.91 44.97 0.72 -4.11 16 22 C 0.03 1.07 6.82 39.04 0.27 1.33 16 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.08 3.00 6.72 -2.39 -0.02 2.99 16 25 H 0.09 2.78 7.11 -2.38 -0.02 2.76 16 26 H 0.33 14.47 8.13 -89.70 -0.73 13.74 16 27 H 0.31 12.85 9.02 -89.69 -0.81 12.04 16 28 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.15 5.47 7.52 -2.91 -0.02 5.45 16 30 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -63.30 278.81 3.12 -60.18 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.37 Total: 28.91 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 3.60 Total: -21.25 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -2.86 Total: -108.88 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.72 Total: -4.11 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -63.30 3.12 -60.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259557310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.483 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds