Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47206 * 109.47021 * 2 1 4 4 N 2.60798 * 109.47095 * 0.02562 * 2 1 3 5 5 C 1.52997 * 109.47415 * 239.99935 * 2 1 3 6 6 C 1.50703 * 109.47084 * 60.00035 * 5 2 1 7 7 H 1.07996 * 119.99751 * 0.02562 * 6 5 2 8 8 C 1.37880 * 119.99788 * 180.02562 * 6 5 2 9 9 N 1.31511 * 120.00327 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99600 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47141 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47071 * 120.00301 * 10 8 6 13 13 H 1.48498 * 109.46651 * 239.99793 * 10 8 6 14 14 C 1.50703 * 109.46966 * 119.99897 * 2 1 3 15 15 C 1.38270 * 119.93782 * 240.00307 * 14 2 1 16 16 C 1.38093 * 120.09726 * 179.97438 * 15 14 2 17 17 C 1.38950 * 119.97698 * 0.02562 * 16 15 14 18 18 N 1.39669 * 120.06172 * 180.02562 * 17 16 15 19 19 C 1.38847 * 119.87642 * 359.97438 * 17 16 15 20 20 C 1.38345 * 119.89883 * 359.70546 * 19 17 16 21 21 F 1.35099 * 119.98812 * 180.31885 * 20 19 17 22 22 H 1.09004 * 109.46733 * 59.99729 * 1 2 3 23 23 H 1.08992 * 109.47068 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00412 * 1 2 3 25 25 H 1.09001 * 109.47375 * 179.97438 * 5 2 1 26 26 H 1.09002 * 109.47045 * 300.00068 * 5 2 1 27 27 H 0.96996 * 119.99914 * 180.02562 * 9 8 6 28 28 H 1.07997 * 119.95033 * 359.97438 * 15 14 2 29 29 H 1.08003 * 120.00882 * 180.02562 * 16 15 14 30 30 H 0.96998 * 119.99650 * 359.97438 * 18 17 16 31 31 H 0.97000 * 119.99693 * 180.02562 * 18 17 16 32 32 H 1.07993 * 120.04961 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4588 0.0011 5 6 2.0401 -0.7212 -1.2492 6 6 1.5378 -0.0108 -2.4797 7 1 0.9172 0.8675 -2.3806 8 6 1.8705 -0.4822 -3.7319 9 7 2.6258 -1.5521 -3.8526 10 14 1.2485 0.3988 -5.2572 11 1 0.4238 1.5658 -4.8530 12 1 2.4038 0.8645 -6.0656 13 1 0.4228 -0.5341 -6.0654 14 6 2.0323 -0.7104 1.2305 15 6 2.8271 -0.0372 2.1399 16 6 3.2888 -0.6848 3.2688 17 6 2.9549 -2.0150 3.4915 18 7 3.4204 -2.6716 4.6329 19 6 2.1567 -2.6901 2.5776 20 6 1.6915 -2.0344 1.4518 21 9 0.9095 -2.6876 0.5647 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.1301 -0.7208 -1.2494 26 1 1.6768 -1.7489 -1.2492 27 1 2.8601 -1.8834 -4.7336 28 1 3.0872 0.9966 1.9670 29 1 3.9091 -0.1574 3.9783 30 1 3.9776 -2.1990 5.2709 31 1 3.1870 -3.6004 4.7873 32 1 1.8958 -3.7241 2.7477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259595003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -2.537584 kcal Electronic energy + Delta-G solvation = -17671.242798 eV Core-core repulsion = 14738.848013 eV Total energy + Delta-G solvation = -2932.394785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.48915 -39.40429 -37.13246 -34.60238 -33.57923 -32.04709 -30.35653 -28.10869 -26.99180 -24.22412 -23.00961 -21.92180 -20.98485 -17.67861 -17.28153 -16.92586 -15.83168 -15.17536 -15.02244 -15.00779 -14.78139 -14.28206 -13.78406 -13.40303 -12.83079 -12.69665 -12.62816 -12.31648 -12.10411 -11.78241 -11.31588 -11.24793 -11.03855 -10.85545 -10.71205 -10.38010 -10.35034 -10.17743 -9.43339 -9.08633 -8.58885 -8.38487 -7.41112 -6.02439 -4.05033 1.45349 1.63475 3.32190 3.40169 3.44592 3.53968 3.63100 3.72735 3.89002 4.45309 4.58965 4.74355 5.03408 5.17922 5.29920 5.34979 5.57376 5.75410 5.90852 6.02682 6.12749 6.28357 6.35242 6.55672 6.56785 6.75214 6.91460 6.99075 7.42561 7.56222 7.60917 7.66586 7.92318 8.29373 8.38226 8.98411 9.59069 11.08479 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.006699 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.184662 B = 4178.866823 C = 4595.819864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.080 3.920 3 C 0.256 3.744 4 N -0.471 5.471 5 C 0.033 3.967 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.890 5.890 10 Si 0.889 3.111 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.283 1.283 14 C -0.148 4.148 15 C -0.046 4.046 16 C -0.205 4.205 17 C 0.232 3.768 18 N -0.878 5.878 19 C -0.234 4.234 20 C 0.168 3.832 21 F -0.123 7.123 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.261 0.739 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.398 0.602 31 H 0.397 0.603 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -4.010 15.748 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 C -0.061 4.061 4 N -0.147 5.147 5 C -0.005 4.005 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.529 5.529 10 Si 0.717 3.283 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.209 1.209 14 C -0.152 4.152 15 C -0.065 4.065 16 C -0.228 4.228 17 C 0.128 3.872 18 N -0.417 5.417 19 C -0.258 4.258 20 C 0.148 3.852 21 F -0.101 7.101 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.226 0.774 31 H 0.225 0.775 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.330 -2.495 15.544 15.746 hybrid contribution -0.270 -0.307 -0.844 0.938 sum -0.599 -2.802 14.700 14.977 Atomic orbital electron populations 1.21866 0.91662 1.03643 1.01855 1.17412 0.96336 0.82934 0.95638 1.28825 0.92173 0.94334 0.90733 1.81023 1.10040 1.12775 1.10870 1.19365 0.97017 0.96397 0.87672 1.21161 1.31949 1.12260 0.90536 0.92312 1.24937 0.95004 0.94938 0.99026 1.69961 1.36550 1.22805 1.23553 0.86572 0.78725 0.79784 0.83224 1.19687 1.21044 1.20864 1.19578 1.03828 0.93536 0.98272 1.20741 0.94192 0.99443 0.92120 1.20502 1.07820 0.93613 1.00852 1.17363 0.91814 0.91249 0.86783 1.42385 1.59810 1.15307 1.24188 1.20360 1.07444 1.01231 0.96739 1.16952 0.91526 0.89405 0.87309 1.91512 1.71347 1.80754 1.66523 0.90371 0.90542 0.93770 0.95708 0.93238 0.92922 0.85628 0.85958 0.77389 0.77460 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.96 37.16 0.30 -2.11 16 2 C 0.08 1.63 0.45 -158.44 -0.07 1.56 16 3 C 0.26 5.48 10.80 -20.76 -0.22 5.25 16 4 N -0.47 -10.52 18.45 42.15 0.78 -9.74 16 5 C 0.03 0.83 3.81 -27.88 -0.11 0.72 16 6 C -0.52 -14.15 7.80 -34.44 -0.27 -14.42 16 7 H 0.06 1.58 6.38 -52.49 -0.34 1.25 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 10 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.15 -2.62 4.76 -104.51 -0.50 -3.11 16 15 C -0.05 -0.73 9.14 -39.62 -0.36 -1.09 16 16 C -0.21 -2.66 9.89 -39.37 -0.39 -3.05 16 17 C 0.23 2.81 6.75 -83.80 -0.57 2.25 16 18 N -0.88 -7.12 9.09 32.41 0.29 -6.83 16 19 C -0.23 -3.18 9.87 -39.32 -0.39 -3.57 16 20 C 0.17 2.79 6.78 -39.45 -0.27 2.52 16 21 F -0.12 -2.22 13.36 2.25 0.03 -2.19 16 22 H 0.08 1.51 6.62 -51.93 -0.34 1.16 16 23 H 0.08 1.34 6.28 -51.93 -0.33 1.01 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.27 6.32 -51.93 -0.33 0.94 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.13 2.03 6.41 -52.49 -0.34 1.70 16 29 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.40 2.44 8.84 -40.82 -0.36 2.08 16 31 H 0.40 2.50 8.84 -40.82 -0.36 2.14 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 278.93 15.07 4.20 4.20 Total: -1.00 -30.95 278.93 -5.14 -36.09 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.22 Total: 0.59 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.94 Total: -13.38 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 1.81 Total: -41.94 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.95 -5.14 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.553 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds