Wall clock time and date at job start Mon Mar 30 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47206 * 109.47021 * 2 1 4 4 N 2.60798 * 109.47095 * 0.02562 * 2 1 3 5 5 C 1.52997 * 109.47415 * 239.99935 * 2 1 3 6 6 C 1.50703 * 109.47084 * 60.00035 * 5 2 1 7 7 H 1.07996 * 119.99751 * 0.02562 * 6 5 2 8 8 C 1.37880 * 119.99788 * 180.02562 * 6 5 2 9 9 N 1.31511 * 120.00327 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99600 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47141 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47071 * 120.00301 * 10 8 6 13 13 H 1.48498 * 109.46651 * 239.99793 * 10 8 6 14 14 C 1.50703 * 109.46966 * 119.99897 * 2 1 3 15 15 C 1.38270 * 119.93782 * 240.00307 * 14 2 1 16 16 C 1.38093 * 120.09726 * 179.97438 * 15 14 2 17 17 C 1.38950 * 119.97698 * 0.02562 * 16 15 14 18 18 N 1.39669 * 120.06172 * 180.02562 * 17 16 15 19 19 C 1.38847 * 119.87642 * 359.97438 * 17 16 15 20 20 C 1.38345 * 119.89883 * 359.70546 * 19 17 16 21 21 F 1.35099 * 119.98812 * 180.31885 * 20 19 17 22 22 H 1.09004 * 109.46733 * 59.99729 * 1 2 3 23 23 H 1.08992 * 109.47068 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00412 * 1 2 3 25 25 H 1.09001 * 109.47375 * 179.97438 * 5 2 1 26 26 H 1.09002 * 109.47045 * 300.00068 * 5 2 1 27 27 H 0.96996 * 119.99914 * 180.02562 * 9 8 6 28 28 H 1.07997 * 119.95033 * 359.97438 * 15 14 2 29 29 H 1.08003 * 120.00882 * 180.02562 * 16 15 14 30 30 H 0.96998 * 119.99650 * 359.97438 * 18 17 16 31 31 H 0.97000 * 119.99693 * 180.02562 * 18 17 16 32 32 H 1.07993 * 120.04961 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4588 0.0011 5 6 2.0401 -0.7212 -1.2492 6 6 1.5378 -0.0108 -2.4797 7 1 0.9172 0.8675 -2.3806 8 6 1.8705 -0.4822 -3.7319 9 7 2.6258 -1.5521 -3.8526 10 14 1.2485 0.3988 -5.2572 11 1 0.4238 1.5658 -4.8530 12 1 2.4038 0.8645 -6.0656 13 1 0.4228 -0.5341 -6.0654 14 6 2.0323 -0.7104 1.2305 15 6 2.8271 -0.0372 2.1399 16 6 3.2888 -0.6848 3.2688 17 6 2.9549 -2.0150 3.4915 18 7 3.4204 -2.6716 4.6329 19 6 2.1567 -2.6901 2.5776 20 6 1.6915 -2.0344 1.4518 21 9 0.9095 -2.6876 0.5647 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.1301 -0.7208 -1.2494 26 1 1.6768 -1.7489 -1.2492 27 1 2.8601 -1.8834 -4.7336 28 1 3.0872 0.9966 1.9670 29 1 3.9091 -0.1574 3.9783 30 1 3.9776 -2.1990 5.2709 31 1 3.1870 -3.6004 4.7873 32 1 1.8958 -3.7241 2.7477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259595003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:37 Heat of formation + Delta-G solvation = -21.994492 kcal Electronic energy + Delta-G solvation = -17672.086512 eV Core-core repulsion = 14738.848013 eV Total energy + Delta-G solvation = -2933.238499 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.79204 -40.62976 -38.58061 -36.16939 -35.10289 -33.78364 -31.47073 -29.57152 -28.59734 -25.94102 -24.34845 -23.35035 -22.39502 -19.09556 -18.58173 -18.04908 -17.58677 -16.74695 -16.40090 -16.21270 -16.00854 -15.86467 -15.12882 -15.01237 -14.36218 -14.28206 -13.95932 -13.78586 -13.60496 -13.39412 -13.05300 -12.87919 -12.68674 -12.55696 -12.27232 -12.16638 -11.97352 -11.65485 -11.08060 -10.98956 -10.54616 -9.72009 -8.42019 -8.16747 -6.26139 0.32764 0.48500 1.38952 1.40808 1.52204 1.84554 1.89588 2.41566 2.75615 2.88254 3.05692 3.17647 3.57053 3.81155 3.96933 4.20070 4.28360 4.45292 4.53662 4.73247 4.92457 5.06608 5.08340 5.20507 5.30973 5.37088 5.45392 5.50029 5.62250 5.80850 5.87791 6.19383 6.56441 6.65758 6.86393 7.05849 7.41356 8.94052 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.006699 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.184662 B = 4178.866823 C = 4595.819864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 C 0.264 3.736 4 N -0.491 5.491 5 C 0.044 3.956 6 C -0.530 4.530 7 H 0.058 0.942 8 C 0.010 3.990 9 N -0.925 5.925 10 Si 0.951 3.049 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.273 1.273 14 C -0.177 4.177 15 C -0.054 4.054 16 C -0.200 4.200 17 C 0.248 3.752 18 N -0.856 5.856 19 C -0.233 4.233 20 C 0.150 3.850 21 F -0.139 7.139 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.070 0.930 25 H -0.009 1.009 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.116 0.884 29 H 0.152 0.848 30 H 0.412 0.588 31 H 0.410 0.590 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -4.316 17.670 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 C -0.053 4.053 4 N -0.167 5.167 5 C 0.006 3.994 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.776 3.224 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.198 1.198 14 C -0.181 4.181 15 C -0.074 4.074 16 C -0.222 4.222 17 C 0.140 3.860 18 N -0.396 5.396 19 C -0.257 4.257 20 C 0.130 3.870 21 F -0.117 7.117 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.010 0.990 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.170 0.830 30 H 0.243 0.757 31 H 0.241 0.759 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.376 -2.816 17.514 17.743 hybrid contribution -0.176 -0.272 -1.294 1.334 sum -0.553 -3.087 16.220 16.521 Atomic orbital electron populations 1.21832 0.90298 1.04073 1.02367 1.17277 0.97440 0.81918 0.95139 1.29094 0.91606 0.94500 0.90083 1.81001 1.10722 1.13414 1.11564 1.19112 0.94750 0.96130 0.89430 1.21506 1.31451 1.12133 0.91680 0.92401 1.25749 0.95315 0.95689 1.02106 1.70071 1.37879 1.24256 1.24324 0.85610 0.78228 0.78888 0.79672 1.19170 1.20972 1.19795 1.19381 1.06343 0.94284 0.98108 1.20714 0.94414 0.99182 0.93047 1.20760 1.07262 0.94038 1.00174 1.17401 0.90418 0.90950 0.87238 1.42373 1.58602 1.15924 1.22700 1.20576 1.07080 1.02241 0.95799 1.17194 0.92308 0.89303 0.88237 1.91465 1.71967 1.80961 1.67356 0.91907 0.90167 0.91069 0.99024 0.94592 0.92757 0.86602 0.82992 0.75732 0.75942 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.96 71.98 0.57 -4.10 16 2 C 0.09 3.54 0.45 -54.73 -0.02 3.52 16 3 C 0.26 11.45 10.80 89.44 0.97 12.41 16 4 N -0.49 -22.10 18.45 20.01 0.37 -21.73 16 5 C 0.04 2.25 3.81 29.85 0.11 2.37 16 6 C -0.53 -29.45 7.80 25.60 0.20 -29.25 16 7 H 0.06 3.16 6.38 -2.91 -0.02 3.15 16 8 C 0.01 0.57 5.46 84.66 0.46 1.03 16 9 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 10 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 14 C -0.18 -6.26 4.76 -19.79 -0.09 -6.35 16 15 C -0.05 -1.67 9.14 22.24 0.20 -1.47 16 16 C -0.20 -4.63 9.89 22.41 0.22 -4.41 16 17 C 0.25 5.17 6.75 38.21 0.26 5.43 16 18 N -0.86 -10.15 9.09 -51.39 -0.47 -10.61 16 19 C -0.23 -5.82 9.87 22.44 0.22 -5.59 16 20 C 0.15 4.91 6.78 22.36 0.15 5.06 16 21 F -0.14 -5.09 13.36 44.97 0.60 -4.49 16 22 H 0.06 2.45 6.62 -2.39 -0.02 2.43 16 23 H 0.08 2.85 6.28 -2.39 -0.02 2.83 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.04 1.93 6.32 -2.39 -0.02 1.91 16 27 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.12 3.73 6.41 -2.91 -0.02 3.71 16 29 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.41 3.10 8.84 -92.71 -0.82 2.28 16 31 H 0.41 3.32 8.84 -92.71 -0.82 2.50 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -67.79 278.93 5.61 -62.19 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -0.46 Total: 4.38 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.25 Total: -21.36 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: 0.19 Total: -87.58 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.60 Total: -4.49 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -67.79 5.61 -62.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.193 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds