Wall clock time and date at job start Mon Mar 30 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38326 * 119.72091 * 2 1 4 4 C 1.38329 * 119.88511 * 179.80914 * 3 2 1 5 5 C 1.38722 * 119.16160 * 0.09216 * 4 3 2 6 6 C 1.37519 * 121.18164 * 0.24743 * 5 4 3 7 7 C 1.38282 * 119.72184 * 179.97438 * 2 1 3 8 8 C 1.51371 * 121.59219 * 178.78452 * 6 5 4 9 9 C 1.53127 * 108.76067 * 284.46071 * 8 6 5 10 10 H 1.09009 * 109.08820 * 330.89973 * 9 8 6 11 11 C 1.50692 * 109.09260 * 211.82728 * 9 8 6 12 12 H 1.07997 * 120.00189 * 359.97438 * 11 9 8 13 13 C 1.37885 * 120.00025 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99817 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 119.99976 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47099 * 89.99930 * 15 13 11 17 17 H 1.48496 * 109.47334 * 209.99573 * 15 13 11 18 18 H 1.48500 * 109.47329 * 330.00286 * 15 13 11 19 19 C 1.51016 * 111.34556 * 91.37886 * 9 8 6 20 20 C 1.51483 * 116.36318 * 288.40755 * 19 9 8 21 21 S 1.77506 * 120.04655 * 180.32190 * 5 4 3 22 22 H 1.09001 * 109.47168 * 89.99989 * 1 2 3 23 23 H 1.08997 * 109.46998 * 209.99744 * 1 2 3 24 24 H 1.09004 * 109.47608 * 330.00261 * 1 2 3 25 25 H 1.07995 * 120.05605 * 359.83550 * 3 2 1 26 26 H 1.07999 * 120.41696 * 180.02562 * 4 3 2 27 27 H 1.07997 * 120.13563 * 359.92659 * 7 2 1 28 28 H 1.09000 * 109.59241 * 44.24243 * 8 6 5 29 29 H 1.08997 * 109.58964 * 164.53346 * 8 6 5 30 30 H 0.96998 * 120.00366 * 180.02562 * 14 13 11 31 31 H 1.08994 * 107.98711 * 166.67968 * 19 9 8 32 32 H 1.09005 * 108.15684 * 50.26544 * 19 9 8 33 33 H 1.09002 * 109.39730 * 309.71025 * 20 19 9 34 34 H 1.09003 * 109.39427 * 189.89214 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2013 0.0000 4 6 3.5760 1.2053 0.0040 5 6 4.2555 -0.0042 0.0060 6 6 3.5785 -1.2012 -0.0010 7 6 2.1926 -1.2009 0.0005 8 6 4.3103 -2.5260 -0.0262 9 6 4.8487 -2.7643 -1.4397 10 1 4.1959 -2.2685 -2.1582 11 6 4.8566 -4.2447 -1.7211 12 1 4.5135 -4.9393 -0.9686 13 6 5.3029 -4.7127 -2.9389 14 7 5.7211 -3.8670 -3.8550 15 14 5.3133 -6.5478 -3.2873 16 1 4.0156 -6.9445 -3.8906 17 1 6.4154 -6.8664 -4.2302 18 1 5.5170 -7.2916 -2.0182 19 6 6.2512 -2.2253 -1.5919 20 6 6.3924 -0.7174 -1.6252 21 16 6.0303 -0.0265 0.0198 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6491 2.1344 -0.0027 26 1 4.1201 2.1382 0.0044 27 1 1.6502 -2.1348 0.0022 28 1 5.1394 -2.4991 0.6809 29 1 3.6240 -3.3278 0.2458 30 1 6.0347 -4.1961 -4.7119 31 1 6.6670 -2.6252 -2.5166 32 1 6.8522 -2.6039 -0.7650 33 1 5.6940 -0.3044 -2.3531 34 1 7.4109 -0.4555 -1.9117 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259627092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:56 Heat of formation + Delta-G solvation = 3.597851 kcal Electronic energy + Delta-G solvation = -15891.571425 eV Core-core repulsion = 13493.363118 eV Total energy + Delta-G solvation = -2398.208307 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15930 -35.88482 -32.78218 -31.82345 -31.13459 -28.51122 -26.74235 -25.16805 -22.96791 -21.88971 -20.63907 -19.04743 -16.99685 -16.38759 -15.43680 -14.88124 -14.60519 -14.23499 -13.62333 -13.50052 -13.13868 -13.03562 -12.48457 -12.26053 -12.05994 -11.93987 -11.57667 -11.45399 -10.95334 -10.79309 -10.65816 -10.52992 -10.14465 -9.69432 -9.56650 -9.37376 -8.99988 -8.47845 -8.33260 -7.98943 -7.05128 -6.04060 -4.13967 1.45792 1.77164 2.43294 3.17769 3.26439 3.33631 3.36817 4.08992 4.38125 5.07456 5.13124 5.21270 5.30291 5.51613 5.68845 5.70321 5.78152 5.90281 5.95174 6.03881 6.20802 6.27462 6.42475 6.43209 6.57934 6.65472 6.84541 6.91850 7.01113 7.12045 7.31996 7.44264 7.64523 7.92007 8.08482 8.39414 8.90436 9.51303 10.98290 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.007651 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.317663 B = 3658.954899 C = 4474.333969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.075 4.075 5 C -0.100 4.100 6 C -0.022 4.022 7 C -0.125 4.125 8 C -0.083 4.083 9 C 0.060 3.940 10 H 0.023 0.977 11 C -0.509 4.509 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.123 4.123 20 C -0.068 4.068 21 S -0.205 6.205 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.261 0.739 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 8.026 5.758 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.163 4.163 4 C -0.096 4.096 5 C -0.212 4.212 6 C -0.025 4.025 7 C -0.145 4.145 8 C -0.121 4.121 9 C 0.042 3.958 10 H 0.041 0.959 11 C -0.547 4.547 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.162 4.162 20 C -0.215 4.215 21 S 0.029 5.971 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.137 0.863 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.304 8.352 6.377 11.355 hybrid contribution -0.840 -1.278 -1.285 1.998 sum -5.144 7.073 5.091 10.120 Atomic orbital electron populations 1.20794 0.91575 1.02380 1.02212 1.19971 0.95824 0.93285 0.98515 1.20922 0.93790 0.97189 1.04448 1.21262 0.93879 0.96736 0.97725 1.21142 0.96233 0.94930 1.08869 1.20556 0.93775 0.95729 0.92398 1.21170 0.93572 0.97413 1.02361 1.21283 0.98988 0.90462 1.01346 1.18215 0.92134 0.96090 0.89385 0.95937 1.21271 1.42333 0.91443 0.99650 0.92363 1.24987 0.95190 0.97793 0.96180 1.69792 1.43458 1.33735 1.05916 0.86579 0.77674 0.85496 0.78213 1.20702 1.21188 1.19834 1.21281 1.01053 0.89170 1.04737 1.23485 1.03452 1.01860 0.92745 1.85295 1.00622 1.83654 1.27514 0.91247 0.91606 0.91871 0.86315 0.85609 0.85785 0.90846 0.91646 0.92865 0.87076 0.94112 0.90602 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.00 36.00 0.36 -0.92 16 2 C -0.08 -1.13 5.88 -104.57 -0.61 -1.75 16 3 C -0.14 -2.10 9.70 -39.52 -0.38 -2.48 16 4 C -0.07 -1.22 9.85 -39.37 -0.39 -1.60 16 5 C -0.10 -1.89 5.61 -39.66 -0.22 -2.11 16 6 C -0.02 -0.42 4.92 -104.42 -0.51 -0.93 16 7 C -0.13 -2.18 9.30 -39.43 -0.37 -2.55 16 8 C -0.08 -1.77 4.85 -27.49 -0.13 -1.91 16 9 C 0.06 1.47 1.94 -92.71 -0.18 1.29 16 10 H 0.02 0.61 7.77 -51.92 -0.40 0.21 16 11 C -0.51 -13.58 8.45 -34.44 -0.29 -13.87 16 12 H 0.06 1.53 7.51 -52.49 -0.39 1.13 16 13 C 0.06 1.59 5.22 -17.82 -0.09 1.50 16 14 N -0.89 -24.64 11.12 55.43 0.62 -24.02 16 15 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.12 -2.86 4.30 -28.50 -0.12 -2.98 16 20 C -0.07 -1.37 6.18 36.39 0.23 -1.14 16 21 S -0.21 -3.86 20.79 -107.50 -2.24 -6.10 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 24 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.12 2.02 7.97 -52.49 -0.42 1.60 16 28 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 29 H 0.06 1.36 7.40 -51.93 -0.38 0.97 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.11 2.89 5.42 -51.93 -0.28 2.61 16 32 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 33 H 0.08 1.57 8.12 -51.93 -0.42 1.15 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -27.66 284.95 -9.81 -37.47 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.74 Total: 2.02 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -2.72 Total: -29.46 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.62 Total: -24.02 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.24 Total: -6.10 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.66 -9.81 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.070 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds