Wall clock time and date at job start Mon Mar 30 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38326 * 119.72091 * 2 1 4 4 C 1.38329 * 119.88511 * 179.80914 * 3 2 1 5 5 C 1.38722 * 119.16160 * 0.09216 * 4 3 2 6 6 C 1.37519 * 121.18164 * 0.24743 * 5 4 3 7 7 C 1.38282 * 119.72184 * 179.97438 * 2 1 3 8 8 C 1.51371 * 121.59219 * 178.78452 * 6 5 4 9 9 C 1.53127 * 108.76067 * 284.46071 * 8 6 5 10 10 H 1.09009 * 109.08820 * 330.89973 * 9 8 6 11 11 C 1.50692 * 109.09260 * 211.82728 * 9 8 6 12 12 H 1.07997 * 120.00189 * 359.97438 * 11 9 8 13 13 C 1.37885 * 120.00025 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99817 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 119.99976 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47099 * 89.99930 * 15 13 11 17 17 H 1.48496 * 109.47334 * 209.99573 * 15 13 11 18 18 H 1.48500 * 109.47329 * 330.00286 * 15 13 11 19 19 C 1.51016 * 111.34556 * 91.37886 * 9 8 6 20 20 C 1.51483 * 116.36318 * 288.40755 * 19 9 8 21 21 S 1.77506 * 120.04655 * 180.32190 * 5 4 3 22 22 H 1.09001 * 109.47168 * 89.99989 * 1 2 3 23 23 H 1.08997 * 109.46998 * 209.99744 * 1 2 3 24 24 H 1.09004 * 109.47608 * 330.00261 * 1 2 3 25 25 H 1.07995 * 120.05605 * 359.83550 * 3 2 1 26 26 H 1.07999 * 120.41696 * 180.02562 * 4 3 2 27 27 H 1.07997 * 120.13563 * 359.92659 * 7 2 1 28 28 H 1.09000 * 109.59241 * 44.24243 * 8 6 5 29 29 H 1.08997 * 109.58964 * 164.53346 * 8 6 5 30 30 H 0.96998 * 120.00366 * 180.02562 * 14 13 11 31 31 H 1.08994 * 107.98711 * 166.67968 * 19 9 8 32 32 H 1.09005 * 108.15684 * 50.26544 * 19 9 8 33 33 H 1.09002 * 109.39730 * 309.71025 * 20 19 9 34 34 H 1.09003 * 109.39427 * 189.89214 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2013 0.0000 4 6 3.5760 1.2053 0.0040 5 6 4.2555 -0.0042 0.0060 6 6 3.5785 -1.2012 -0.0010 7 6 2.1926 -1.2009 0.0005 8 6 4.3103 -2.5260 -0.0262 9 6 4.8487 -2.7643 -1.4397 10 1 4.1959 -2.2685 -2.1582 11 6 4.8566 -4.2447 -1.7211 12 1 4.5135 -4.9393 -0.9686 13 6 5.3029 -4.7127 -2.9389 14 7 5.7211 -3.8670 -3.8550 15 14 5.3133 -6.5478 -3.2873 16 1 4.0156 -6.9445 -3.8906 17 1 6.4154 -6.8664 -4.2302 18 1 5.5170 -7.2916 -2.0182 19 6 6.2512 -2.2253 -1.5919 20 6 6.3924 -0.7174 -1.6252 21 16 6.0303 -0.0265 0.0198 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6491 2.1344 -0.0027 26 1 4.1201 2.1382 0.0044 27 1 1.6502 -2.1348 0.0022 28 1 5.1394 -2.4991 0.6809 29 1 3.6240 -3.3278 0.2458 30 1 6.0347 -4.1961 -4.7119 31 1 6.6670 -2.6252 -2.5166 32 1 6.8522 -2.6039 -0.7650 33 1 5.6940 -0.3044 -2.3531 34 1 7.4109 -0.4555 -1.9117 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259627092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:56 Heat of formation + Delta-G solvation = -8.820598 kcal Electronic energy + Delta-G solvation = -15892.109929 eV Core-core repulsion = 13493.363118 eV Total energy + Delta-G solvation = -2398.746811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49445 -37.65276 -34.38873 -33.35343 -32.67974 -30.22203 -27.86275 -26.95821 -24.77071 -23.20231 -22.13417 -20.78676 -18.64463 -18.11640 -16.93507 -16.51695 -16.27501 -15.60837 -15.06239 -14.91422 -14.65483 -14.54537 -14.01002 -13.72946 -13.50040 -13.28456 -13.11257 -12.94120 -12.80650 -12.47609 -12.22034 -12.03775 -11.82941 -11.52085 -11.39075 -10.99017 -10.92129 -10.43472 -9.71044 -9.46783 -8.54593 -8.08989 -6.27597 0.12258 0.46223 0.98958 1.40165 1.41657 1.51583 1.65627 2.40940 2.78049 3.13184 3.89372 3.98045 4.01473 4.09245 4.35268 4.39683 4.47287 4.61390 4.64846 4.74609 4.80951 4.84871 4.88722 5.03388 5.20378 5.20954 5.25141 5.38329 5.42573 5.57629 5.62680 5.68574 5.92588 6.05211 6.11688 6.36952 6.83545 7.40933 8.91100 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.007651 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.317663 B = 3658.954899 C = 4474.333969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.135 4.135 4 C -0.077 4.077 5 C -0.127 4.127 6 C -0.049 4.049 7 C -0.143 4.143 8 C -0.073 4.073 9 C 0.065 3.935 10 H -0.014 1.014 11 C -0.532 4.532 12 H 0.056 0.944 13 C 0.014 3.986 14 N -0.913 5.913 15 Si 0.955 3.045 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.113 4.113 20 C -0.066 4.066 21 S -0.189 6.189 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.159 0.841 26 H 0.147 0.853 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 9.226 6.433 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.154 4.154 4 C -0.097 4.097 5 C -0.238 4.238 6 C -0.052 4.052 7 C -0.162 4.162 8 C -0.111 4.111 9 C 0.047 3.953 10 H 0.004 0.996 11 C -0.570 4.570 12 H 0.074 0.926 13 C -0.185 4.185 14 N -0.553 5.553 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.153 4.153 20 C -0.214 4.214 21 S 0.046 5.954 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.177 0.823 26 H 0.165 0.835 27 H 0.144 0.856 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.699 9.554 7.063 13.177 hybrid contribution -0.499 -1.590 -1.468 2.221 sum -6.198 7.963 5.595 11.538 Atomic orbital electron populations 1.20877 0.88614 1.04085 1.03217 1.20416 0.97979 0.92438 0.96270 1.21401 0.93267 0.98621 1.02131 1.21587 0.94910 0.96449 0.96800 1.21339 0.95992 0.95811 1.10649 1.20437 0.94842 0.94941 0.94964 1.21339 0.92910 0.98916 1.03081 1.21031 0.98878 0.92101 0.99042 1.18092 0.92117 0.94706 0.90386 0.99600 1.21625 1.42616 0.92772 0.99981 0.92616 1.25730 0.94790 1.01935 0.96010 1.69935 1.43808 1.35432 1.06144 0.85606 0.77727 0.80528 0.78132 1.20246 1.20766 1.19245 1.21094 0.99921 0.91459 1.02829 1.23310 1.04379 0.99529 0.94143 1.85123 1.01496 1.82970 1.25826 0.90390 0.90943 0.89257 0.82343 0.83484 0.85598 0.91368 0.92002 0.92850 0.89978 0.94716 0.91709 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 10.00 71.23 0.71 -1.41 16 2 C -0.07 -1.93 5.88 -19.83 -0.12 -2.05 16 3 C -0.13 -3.45 9.70 22.31 0.22 -3.23 16 4 C -0.08 -2.30 9.85 22.41 0.22 -2.08 16 5 C -0.13 -4.69 5.61 22.22 0.12 -4.56 16 6 C -0.05 -1.93 4.92 -19.74 -0.10 -2.02 16 7 C -0.14 -4.89 9.30 22.36 0.21 -4.68 16 8 C -0.07 -3.21 4.85 30.10 0.15 -3.06 16 9 C 0.07 3.34 1.94 -12.15 -0.02 3.31 16 10 H -0.01 -0.81 7.77 -2.38 -0.02 -0.83 16 11 C -0.53 -29.30 8.45 25.60 0.22 -29.09 16 12 H 0.06 3.01 7.51 -2.91 -0.02 2.99 16 13 C 0.01 0.76 5.22 84.66 0.44 1.20 16 14 N -0.91 -52.01 11.12 21.45 0.24 -51.77 16 15 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.11 -5.48 4.30 29.45 0.13 -5.35 16 20 C -0.07 -2.71 6.18 71.49 0.44 -2.27 16 21 S -0.19 -7.03 20.79 -56.49 -1.17 -8.20 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 24 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 25 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 26 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 27 H 0.13 4.11 7.97 -2.91 -0.02 4.09 16 28 H 0.07 3.00 7.05 -2.39 -0.02 2.98 16 29 H 0.06 2.67 7.40 -2.39 -0.02 2.65 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.08 4.45 5.42 -2.39 -0.01 4.44 16 32 H 0.03 1.66 7.87 -2.38 -0.02 1.64 16 33 H 0.06 2.76 8.12 -2.39 -0.02 2.74 16 34 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 Total: -1.00 -60.84 284.95 4.78 -56.06 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.08 Total: 13.95 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 2.62 Total: -55.29 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.24 Total: -51.77 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -1.17 Total: -8.20 kcal Total: -60.84 4.78 -56.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.239 kcal (2) G-P(sol) polarization free energy of solvation -60.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds