Wall clock time and date at job start Mon Mar 30 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47320 * 2 1 4 4 N 1.34174 * 126.05400 * 270.32409 * 3 2 1 5 5 C 1.31500 * 108.62475 * 180.11500 * 4 3 2 6 6 C 1.47046 * 125.76239 * 179.87134 * 5 4 3 7 7 C 1.36135 * 126.62247 * 179.71915 * 6 5 4 8 8 N 1.33970 * 107.48146 * 179.97438 * 7 6 5 9 9 C 1.30443 * 108.95613 * 359.97438 * 8 7 6 10 10 O 1.33939 * 109.10831 * 359.77049 * 9 8 7 11 11 O 1.34544 * 108.48141 * 359.60809 * 5 4 3 12 12 C 1.34514 * 126.05733 * 89.99631 * 3 2 1 13 13 C 1.50702 * 126.33854 * 0.02562 * 12 3 2 14 14 C 1.50699 * 109.47033 * 89.99526 * 13 12 3 15 15 H 1.08006 * 120.00024 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00006 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00285 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47278 * 90.00178 * 18 16 14 20 20 H 1.48500 * 109.47333 * 210.00698 * 18 16 14 21 21 H 1.48505 * 109.47124 * 330.00276 * 18 16 14 22 22 H 1.09006 * 109.46964 * 299.99938 * 1 2 3 23 23 H 1.09001 * 109.47252 * 60.00190 * 1 2 3 24 24 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47134 * 239.99587 * 2 1 3 26 26 H 1.09001 * 109.47252 * 119.99810 * 2 1 3 27 27 H 1.08003 * 126.25700 * 359.95603 * 7 6 5 28 28 H 1.08006 * 125.44182 * 180.02562 * 9 8 7 29 29 H 1.08997 * 109.47315 * 209.99732 * 13 12 3 30 30 H 1.09001 * 109.46695 * 330.00133 * 13 12 3 31 31 H 0.96992 * 120.00437 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2898 2.1673 -1.0847 5 6 2.7125 3.3486 -0.6909 6 6 3.1036 4.4591 -1.5719 7 6 3.5381 5.6894 -1.1837 8 7 3.7875 6.3969 -2.2937 9 6 3.5264 5.6567 -3.3355 10 8 3.1073 4.4529 -2.9242 11 8 2.7212 3.3718 0.6543 12 6 2.2962 2.1673 1.0874 13 6 2.1447 1.7374 2.5239 14 6 3.4339 1.1208 3.0024 15 1 4.2786 1.0480 2.3333 16 6 3.5354 0.6507 4.2945 17 7 2.5069 0.7399 5.1094 18 14 5.1335 -0.1128 4.8878 19 1 6.0013 0.9433 5.4681 20 1 4.8390 -1.1358 5.9232 21 1 5.8309 -0.7532 3.7437 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.6593 6.0325 -0.1668 28 1 3.6350 5.9640 -4.3652 29 1 1.9063 2.6047 3.1395 30 1 1.3411 1.0050 2.6011 31 1 2.5781 0.4089 6.0183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:32 Heat of formation + Delta-G solvation = 11.079369 kcal Electronic energy + Delta-G solvation = -17294.245691 eV Core-core repulsion = 14350.068592 eV Total energy + Delta-G solvation = -2944.177099 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.60758 -44.20375 -36.79743 -35.98312 -35.71948 -34.23663 -32.39181 -31.59730 -28.39411 -25.85002 -25.25487 -23.82881 -23.51919 -22.41700 -21.35175 -19.25267 -18.80241 -18.04750 -17.63469 -17.23679 -16.78390 -16.48491 -15.44653 -15.14835 -15.05762 -14.50634 -14.38256 -14.08133 -13.63936 -13.56608 -12.89264 -12.70487 -12.60799 -12.43645 -12.26355 -12.18687 -12.01729 -11.85739 -11.72683 -11.50631 -10.72430 -10.67327 -9.16270 -8.28131 -6.43387 -0.45654 0.69949 0.81585 1.40728 1.40933 1.44107 1.53153 1.79509 2.26271 2.39012 2.77991 3.04123 3.28566 3.73657 3.79975 3.89287 4.27704 4.42406 4.47599 4.51796 4.56391 4.67167 4.81558 5.02002 5.11336 5.17554 5.20021 5.23896 5.36723 5.41017 5.61072 5.95095 6.41365 6.57833 6.63342 7.25824 8.80239 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.005966 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.053823 B = 4692.199298 C = 5446.707279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 C -0.033 4.033 4 N -0.461 5.461 5 C 0.214 3.786 6 C 0.009 3.991 7 C 0.023 3.977 8 N -0.513 5.513 9 C 0.220 3.780 10 O -0.190 6.190 11 O -0.194 6.194 12 C 0.010 3.990 13 C 0.105 3.895 14 C -0.541 4.541 15 H 0.051 0.949 16 C 0.021 3.979 17 N -0.918 5.918 18 Si 0.965 3.035 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.268 1.268 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.203 0.797 28 H 0.316 0.684 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 4.819 -13.611 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 C -0.155 4.155 4 N -0.192 5.192 5 C 0.012 3.988 6 C -0.045 4.045 7 C -0.119 4.119 8 N -0.240 5.240 9 C -0.004 4.004 10 O -0.077 6.077 11 O -0.081 6.081 12 C -0.043 4.043 13 C 0.068 3.932 14 C -0.579 4.579 15 H 0.069 0.931 16 C -0.179 4.179 17 N -0.556 5.556 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.193 1.193 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.220 0.780 28 H 0.331 0.669 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.265 5.216 -14.108 15.044 hybrid contribution 0.552 -0.659 1.346 1.597 sum 0.287 4.558 -12.762 13.554 Atomic orbital electron populations 1.21664 0.93172 1.03126 1.01377 1.19931 0.97065 0.86846 1.03616 1.21804 1.07167 0.99968 0.86521 1.70582 1.15151 1.01773 1.31672 1.21428 1.05306 0.92909 0.79202 1.18438 1.11943 0.93368 0.80708 1.23709 0.99085 0.88652 1.00440 1.70473 1.21671 1.33614 0.98239 1.29728 0.92057 0.75922 1.02691 1.84536 1.65939 1.38144 1.19031 1.84449 1.66150 1.35926 1.21597 1.24579 0.98502 0.81285 0.99915 1.17804 0.98441 0.96193 0.80750 1.21135 0.97845 1.41099 0.97785 0.93102 1.25736 1.00183 0.95735 0.96254 1.70014 1.31807 1.46572 1.07219 0.85447 0.79011 0.78395 0.78257 1.19926 1.19846 1.19283 0.93642 0.92773 0.89566 0.89511 0.90121 0.77977 0.66945 0.96170 0.92413 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.89 71.98 0.71 -3.34 16 2 C -0.04 -1.29 6.09 29.85 0.18 -1.11 16 3 C -0.03 -1.40 6.35 41.35 0.26 -1.14 16 4 N -0.46 -19.24 11.34 -293.47 -3.33 -22.56 16 5 C 0.21 8.59 8.14 87.05 0.71 9.30 16 6 C 0.01 0.30 7.30 24.09 0.18 0.48 16 7 C 0.02 0.65 11.87 83.88 1.00 1.65 16 8 N -0.51 -12.33 11.26 -314.90 -3.55 -15.88 16 9 C 0.22 3.88 13.21 130.45 1.72 5.61 16 10 O -0.19 -5.10 10.80 -8.44 -0.09 -5.19 16 11 O -0.19 -8.61 10.81 -10.51 -0.11 -8.72 16 12 C 0.01 0.47 6.57 24.83 0.16 0.63 16 13 C 0.11 5.35 5.13 29.10 0.15 5.50 16 14 C -0.54 -29.54 9.09 25.60 0.23 -29.31 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 16 C 0.02 1.15 5.46 84.65 0.46 1.61 16 17 N -0.92 -51.45 13.29 21.45 0.28 -51.16 16 18 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.08 3.03 7.77 -2.39 -0.02 3.01 16 27 H 0.20 5.11 8.06 -2.91 -0.02 5.09 16 28 H 0.32 1.01 8.06 -2.91 -0.02 0.99 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 2.94 7.78 -2.39 -0.02 2.92 16 31 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -67.05 285.87 2.15 -64.91 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.15 Total: 4.42 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.77 Total: -10.13 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -6.59 Total: -89.60 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.20 Total: -13.91 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.05 2.15 -64.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.985 kcal (2) G-P(sol) polarization free energy of solvation -67.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds