Wall clock time and date at job start Mon Mar 30 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37693 * 125.06437 * 2 1 4 4 C 1.39122 * 133.47523 * 359.97438 * 3 2 1 5 5 C 1.37947 * 119.75783 * 180.02562 * 4 3 2 6 6 F 1.35094 * 119.69590 * 179.97438 * 5 4 3 7 7 C 1.39036 * 120.60966 * 359.97330 * 5 4 3 8 8 C 1.36606 * 120.50270 * 0.04790 * 7 5 4 9 9 C 1.39624 * 119.80260 * 359.95245 * 8 7 5 10 10 C 1.46535 * 133.99399 * 179.97438 * 9 8 7 11 11 C 1.34200 * 107.00329 * 180.25078 * 10 9 8 12 12 C 1.50707 * 125.03942 * 179.73537 * 11 10 9 13 13 H 1.08996 * 109.47027 * 205.02403 * 12 11 10 14 14 N 1.46895 * 109.46571 * 325.02119 * 12 11 10 15 15 C 1.50695 * 109.47220 * 85.02278 * 12 11 10 16 16 H 1.08002 * 120.00037 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99986 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00031 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99905 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47101 * 90.00105 * 19 17 15 21 21 H 1.48498 * 109.47190 * 209.99833 * 19 17 15 22 22 H 1.48499 * 109.47097 * 330.00057 * 19 17 15 23 23 H 1.09009 * 109.47104 * 89.97545 * 1 2 3 24 24 H 1.08993 * 109.47460 * 209.98063 * 1 2 3 25 25 H 1.09004 * 109.46972 * 329.97957 * 1 2 3 26 26 H 1.07994 * 120.12269 * 0.04123 * 4 3 2 27 27 H 1.08002 * 119.74787 * 180.02562 * 7 5 4 28 28 H 1.08007 * 120.09815 * 179.97438 * 8 7 5 29 29 H 1.08002 * 126.49388 * 359.97438 * 10 9 8 30 30 H 1.00901 * 111.00092 * 60.00558 * 14 12 11 31 31 H 1.00903 * 110.99677 * 183.95091 * 14 12 11 32 32 H 0.97000 * 120.00100 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2561 1.1270 0.0000 4 6 1.9796 2.4905 -0.0005 5 6 3.0173 3.3995 -0.0008 6 9 2.7474 4.7232 -0.0018 7 6 4.3383 2.9659 -0.0002 8 6 4.6300 1.6313 -0.0002 9 6 3.5946 0.6946 0.0002 10 6 3.5470 -0.7699 -0.0002 11 6 2.2516 -1.1205 -0.0051 12 6 1.7387 -2.5376 -0.0128 13 1 0.7406 -2.5603 -0.4502 14 7 2.6412 -3.3805 -0.8084 15 6 1.6801 -3.0584 1.4000 16 1 1.9834 -2.4263 2.2216 17 6 1.2392 -4.3417 1.6440 18 7 0.8693 -5.1112 0.6437 19 14 1.1671 -4.9875 3.3953 20 1 -0.1640 -4.6850 3.9801 21 1 1.3833 -6.4567 3.3905 22 1 2.2247 -4.3342 4.2077 23 1 -0.3634 0.0004 -1.0278 24 1 -0.3634 -0.8901 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 0.9565 2.8361 -0.0002 27 1 5.1399 3.6897 -0.0001 28 1 5.6586 1.3017 -0.0002 29 1 4.3939 -1.4401 -0.0012 30 1 3.5737 -3.3760 -0.4229 31 1 2.2852 -4.3217 -0.8827 32 1 0.5595 -6.0143 0.8152 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259653472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:37 Heat of formation + Delta-G solvation = 7.672732 kcal Electronic energy + Delta-G solvation = -17487.521343 eV Core-core repulsion = 14555.569311 eV Total energy + Delta-G solvation = -2931.952032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.59092 -40.84218 -36.72937 -34.57664 -32.32064 -31.20278 -30.14060 -27.87326 -26.16472 -25.65324 -23.22896 -21.42055 -21.14260 -18.92811 -17.07003 -16.70607 -16.41025 -15.86501 -15.36552 -14.86042 -14.64419 -14.55778 -14.09430 -13.51502 -13.07704 -12.85055 -12.79636 -12.32660 -12.23478 -11.85900 -11.61993 -11.33910 -11.05365 -10.87921 -10.65422 -10.56613 -10.09839 -9.90294 -9.19823 -8.79322 -7.67966 -7.37858 -7.03871 -6.24433 -4.42882 1.38532 1.82239 3.13387 3.21475 3.24064 3.28379 3.40841 4.14222 4.22930 4.62186 4.94440 4.98985 5.18288 5.26644 5.48743 5.56926 5.62016 5.78384 5.90354 5.95044 6.23808 6.37453 6.43574 6.51843 6.62871 6.82833 6.97143 7.18746 7.50353 7.60441 7.72408 7.86378 7.97281 8.49719 8.76169 8.96784 9.30432 10.72534 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.035303 B = 0.005650 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.936748 B = 4954.319946 C = 5043.214704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.478 5.478 3 C 0.109 3.891 4 C -0.162 4.162 5 C 0.094 3.906 6 F -0.149 7.149 7 C -0.187 4.187 8 C -0.049 4.049 9 C -0.106 4.106 10 C -0.218 4.218 11 C 0.151 3.849 12 C 0.264 3.736 13 H 0.048 0.952 14 N -0.845 5.845 15 C -0.548 4.548 16 H 0.059 0.941 17 C 0.069 3.931 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.143 0.857 30 H 0.318 0.682 31 H 0.360 0.640 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 9.910 -1.175 10.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.161 5.161 3 C 0.001 3.999 4 C -0.184 4.184 5 C 0.074 3.926 6 F -0.127 7.127 7 C -0.207 4.207 8 C -0.067 4.067 9 C -0.112 4.112 10 C -0.241 4.241 11 C 0.044 3.956 12 C 0.153 3.847 13 H 0.065 0.935 14 N -0.376 5.376 15 C -0.588 4.588 16 H 0.077 0.923 17 C -0.134 4.134 18 N -0.530 5.530 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.082 0.918 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.161 0.839 30 H 0.127 0.873 31 H 0.177 0.823 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.574 10.212 -1.836 10.495 hybrid contribution -0.218 -0.682 1.902 2.032 sum 1.355 9.530 0.066 9.626 Atomic orbital electron populations 1.21923 0.77588 1.04335 1.02574 1.43834 1.05869 1.03805 1.62614 1.17806 0.90670 0.87490 1.03918 1.19659 0.98663 0.89758 1.10290 1.17036 0.93303 0.76642 1.05609 1.91432 1.94841 1.32053 1.94416 1.20424 0.94421 0.96559 1.09279 1.20036 0.98278 0.90928 0.97461 1.19378 0.91696 0.94417 1.05695 1.21209 0.95973 0.91033 1.15901 1.21240 0.89715 0.89282 0.95341 1.17607 0.92820 0.81758 0.92542 0.93466 1.59331 1.04984 1.18432 1.54825 1.21750 1.45321 0.98821 0.92916 0.92322 1.25003 0.94029 0.96644 0.97740 1.69729 1.43530 1.08949 1.30793 0.86455 0.78640 0.78029 0.84136 1.20487 1.20956 1.19711 0.91751 0.88618 0.90971 0.85804 0.85542 0.85491 0.83945 0.87257 0.82303 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.56 59.85 0.63 1.85 16 2 N -0.48 -9.20 3.18 -117.18 -0.37 -9.58 16 3 C 0.11 2.01 6.81 -83.99 -0.57 1.44 16 4 C -0.16 -2.64 9.93 -39.36 -0.39 -3.03 16 5 C 0.09 1.48 7.28 -39.39 -0.29 1.19 16 6 F -0.15 -2.26 17.25 2.25 0.04 -2.22 16 7 C -0.19 -2.73 9.95 -39.88 -0.40 -3.13 16 8 C -0.05 -0.75 10.05 -39.65 -0.40 -1.15 16 9 C -0.11 -1.98 6.37 -105.12 -0.67 -2.65 16 10 C -0.22 -4.40 10.33 -37.66 -0.39 -4.79 16 11 C 0.15 3.25 5.83 -81.75 -0.48 2.77 16 12 C 0.26 6.20 2.72 -70.02 -0.19 6.01 16 13 H 0.05 1.19 7.35 -51.93 -0.38 0.81 16 14 N -0.84 -19.17 9.03 -6.65 -0.06 -19.23 16 15 C -0.55 -13.94 8.71 -34.44 -0.30 -14.24 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.76 5.38 -17.82 -0.10 1.66 16 18 N -0.89 -23.13 11.54 55.43 0.64 -22.50 16 19 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 24 H 0.10 1.61 7.42 -51.93 -0.39 1.22 16 25 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 26 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 29 H 0.14 2.71 7.38 -52.49 -0.39 2.32 16 30 H 0.32 6.87 7.93 -39.29 -0.31 6.56 16 31 H 0.36 8.67 7.08 -39.29 -0.28 8.40 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -26.82 279.41 -7.50 -34.31 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -3.40 Total: 14.03 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.53 Total: -14.07 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.21 Total: -51.30 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.82 -7.50 -34.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.987 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds