Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.46489 * 126.49476 * 2 1 4 4 C 1.39666 * 133.97441 * 0.05541 * 3 2 1 5 5 C 1.37788 * 119.63051 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.83918 * 179.97438 * 5 4 3 7 7 C 1.39036 * 120.33494 * 359.97438 * 5 4 3 8 8 C 1.37719 * 120.64681 * 359.97438 * 7 5 4 9 9 C 1.39097 * 119.95356 * 0.02562 * 8 7 5 10 10 N 1.37812 * 133.40068 * 180.33921 * 9 8 7 11 11 H 0.97007 * 125.06877 * 359.94784 * 10 9 8 12 12 C 1.34245 * 126.49453 * 180.02562 * 2 1 3 13 13 C 1.50700 * 125.03050 * 359.97438 * 12 2 1 14 14 H 1.09004 * 109.47107 * 40.00440 * 13 12 2 15 15 N 1.46904 * 109.46995 * 159.99773 * 13 12 2 16 16 C 1.50698 * 109.47276 * 279.99997 * 13 12 2 17 17 H 1.07997 * 119.99952 * 354.82201 * 16 13 12 18 18 C 1.37877 * 119.99994 * 174.82265 * 16 13 12 19 19 N 1.31515 * 119.99910 * 164.38857 * 18 16 13 20 20 Si 1.86806 * 120.00087 * 344.39320 * 18 16 13 21 21 H 1.48496 * 109.46854 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.46845 * 300.00193 * 20 18 16 23 23 H 1.48502 * 109.46989 * 59.99852 * 20 18 16 24 24 H 1.09000 * 109.46655 * 269.97565 * 1 2 3 25 25 H 1.09002 * 109.46676 * 29.97249 * 1 2 3 26 26 H 1.09000 * 109.47119 * 149.97334 * 1 2 3 27 27 H 1.07994 * 120.18396 * 359.96298 * 4 3 2 28 28 H 1.07996 * 119.67966 * 180.02562 * 7 5 4 29 29 H 1.07995 * 120.02547 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99471 * 54.09933 * 15 13 12 31 31 H 1.00901 * 110.99943 * 178.04817 * 15 13 12 32 32 H 0.96993 * 120.00200 * 354.84494 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1470 2.5550 0.0010 5 6 3.2154 3.4252 0.0001 6 9 2.9966 4.7583 0.0005 7 6 4.5177 2.9382 -0.0012 8 6 4.7602 1.5825 -0.0011 9 6 3.6962 0.6866 -0.0002 10 7 3.6168 -0.6892 0.0060 11 1 4.3773 -1.2914 0.0105 12 6 2.3055 -1.0792 -0.0005 13 6 1.8279 -2.5085 -0.0006 14 1 0.9659 -2.6036 -0.6609 15 7 2.9070 -3.3853 -0.4749 16 6 1.4352 -2.9071 1.3987 17 1 1.6006 -2.2263 2.2206 18 6 0.8648 -4.1409 1.6296 19 7 0.8031 -4.6181 2.8536 20 14 0.1797 -5.1348 0.2040 21 1 -0.3748 -6.4145 0.7141 22 1 -0.8965 -4.3617 -0.4663 23 1 1.2653 -5.4179 -0.7689 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.1365 2.9359 0.0014 28 1 5.3472 3.6297 -0.0014 29 1 5.7758 1.2152 -0.0025 30 1 3.7495 -3.2448 0.0623 31 1 2.6221 -4.3530 -0.4541 32 1 1.2246 -4.1378 3.5832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259679518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -1.479137 kcal Electronic energy + Delta-G solvation = -17518.976956 eV Core-core repulsion = 14586.628069 eV Total energy + Delta-G solvation = -2932.348887 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.55295 -40.93834 -36.77798 -34.51720 -32.64109 -31.86930 -29.82984 -28.43460 -26.55968 -25.51673 -23.16464 -21.77831 -20.56832 -18.63332 -17.90719 -17.49696 -16.91966 -15.75762 -15.31395 -15.24192 -14.64620 -14.25364 -13.78379 -13.64517 -13.03651 -12.92644 -12.55611 -12.45094 -12.26541 -12.17462 -11.87042 -11.65278 -11.08426 -10.88541 -10.57241 -10.30958 -10.21366 -9.49383 -9.29321 -8.68740 -7.95736 -7.65511 -7.15684 -6.61668 -4.41297 1.29228 1.69283 3.16834 3.23248 3.27893 3.41676 3.54459 4.00117 4.24354 4.53903 4.86543 4.99617 5.10979 5.30982 5.46635 5.60578 5.64985 5.97060 6.02028 6.06233 6.22948 6.34447 6.37368 6.41284 6.57638 6.64080 6.77676 7.09476 7.26766 7.51058 7.56811 7.93427 8.04147 8.14892 8.19450 8.64272 9.31142 10.65256 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039854 B = 0.005883 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.394228 B = 4758.149007 C = 5018.463307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.201 4.201 3 C -0.067 4.067 4 C -0.111 4.111 5 C 0.059 3.941 6 F -0.150 7.150 7 C -0.148 4.148 8 C -0.098 4.098 9 C 0.079 3.921 10 N -0.582 5.582 11 H 0.414 0.586 12 C 0.164 3.836 13 C 0.232 3.768 14 H 0.063 0.937 15 N -0.861 5.861 16 C -0.627 4.627 17 H 0.060 0.940 18 C 0.037 3.963 19 N -0.891 5.891 20 Si 1.040 2.960 21 H -0.282 1.282 22 H -0.278 1.278 23 H -0.272 1.272 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.319 0.681 31 H 0.340 0.660 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 9.046 -6.469 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.207 4.207 3 C -0.073 4.073 4 C -0.130 4.130 5 C 0.038 3.962 6 F -0.129 7.129 7 C -0.168 4.168 8 C -0.119 4.119 9 C -0.029 4.029 10 N -0.184 5.184 11 H 0.252 0.748 12 C 0.055 3.945 13 C 0.122 3.878 14 H 0.081 0.919 15 N -0.392 5.392 16 C -0.667 4.667 17 H 0.079 0.921 18 C -0.171 4.171 19 N -0.524 5.524 20 Si 0.867 3.133 21 H -0.207 1.207 22 H -0.204 1.204 23 H -0.199 1.199 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.155 0.845 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.167 7.968 -7.521 11.723 hybrid contribution 1.197 1.035 1.557 2.220 sum 5.364 9.003 -5.964 12.058 Atomic orbital electron populations 1.19945 0.89598 1.01016 1.01528 1.19804 0.95292 0.89157 1.16472 1.18859 0.92419 0.92200 1.03830 1.20303 0.98237 0.91297 1.03202 1.17219 0.93838 0.76822 1.08304 1.91433 1.95700 1.31108 1.94680 1.20547 0.95154 0.95118 1.05953 1.19745 0.96795 0.91130 1.04244 1.18251 0.95251 0.83917 1.05492 1.41714 1.07956 1.04178 1.64515 0.74842 1.20652 0.81436 0.96635 0.95824 1.18188 0.90605 0.82617 0.96423 0.91944 1.59870 1.07723 1.11279 1.60368 1.22503 1.47806 1.03798 0.92577 0.92147 1.25830 0.94263 0.95594 1.01406 1.70822 1.41278 1.39677 1.00598 0.84067 0.77477 0.76904 0.74858 1.20718 1.20388 1.19903 0.92133 0.93152 0.91816 0.85294 0.85167 0.85753 0.87116 0.84472 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.17 36.01 0.37 -0.77 16 2 C -0.20 -3.99 6.31 -102.71 -0.65 -4.64 16 3 C -0.07 -1.24 6.35 -105.13 -0.67 -1.91 16 4 C -0.11 -1.83 10.07 -39.21 -0.40 -2.22 16 5 C 0.06 0.90 7.29 -39.45 -0.29 0.62 16 6 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 7 C -0.15 -2.05 9.99 -39.47 -0.39 -2.45 16 8 C -0.10 -1.41 10.06 -39.45 -0.40 -1.80 16 9 C 0.08 1.36 7.27 -83.95 -0.61 0.75 16 10 N -0.58 -10.32 5.88 -6.94 -0.04 -10.36 16 11 H 0.41 6.37 7.80 -40.82 -0.32 6.06 16 12 C 0.16 3.35 6.00 -81.78 -0.49 2.86 16 13 C 0.23 5.07 2.33 -70.02 -0.16 4.90 16 14 H 0.06 1.40 6.11 -51.93 -0.32 1.08 16 15 N -0.86 -17.00 9.12 -6.65 -0.06 -17.06 16 16 C -0.63 -16.08 9.05 -34.44 -0.31 -16.39 16 17 H 0.06 1.75 7.99 -52.49 -0.42 1.33 16 18 C 0.04 0.96 5.38 -17.82 -0.10 0.87 16 19 N -0.89 -25.49 13.70 55.43 0.76 -24.73 16 20 Si 1.04 22.72 26.42 -169.99 -4.49 18.23 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.38 5.69 56.52 0.32 -5.05 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.14 7.28 -51.93 -0.38 0.76 16 27 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.32 5.85 7.81 -39.29 -0.31 5.54 16 31 H 0.34 6.87 5.49 -39.29 -0.22 6.65 16 32 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 LS Contribution 274.22 15.07 4.13 4.13 Total: -1.00 -28.16 274.22 -7.06 -35.22 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -3.30 Total: 16.99 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -4.10 Total: -20.17 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.66 Total: -52.15 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.49 Total: 18.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.16 -7.06 -35.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.742 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds