Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.46489 * 126.49476 * 2 1 4 4 C 1.39666 * 133.97441 * 0.05541 * 3 2 1 5 5 C 1.37788 * 119.63051 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.83918 * 179.97438 * 5 4 3 7 7 C 1.39036 * 120.33494 * 359.97438 * 5 4 3 8 8 C 1.37719 * 120.64681 * 359.97438 * 7 5 4 9 9 C 1.39097 * 119.95356 * 0.02562 * 8 7 5 10 10 N 1.37812 * 133.40068 * 180.33921 * 9 8 7 11 11 H 0.97007 * 125.06877 * 359.94784 * 10 9 8 12 12 C 1.34245 * 126.49453 * 180.02562 * 2 1 3 13 13 C 1.50700 * 125.03050 * 359.97438 * 12 2 1 14 14 H 1.09004 * 109.47107 * 40.00440 * 13 12 2 15 15 N 1.46904 * 109.46995 * 159.99773 * 13 12 2 16 16 C 1.50698 * 109.47276 * 279.99997 * 13 12 2 17 17 H 1.07997 * 119.99952 * 354.82201 * 16 13 12 18 18 C 1.37877 * 119.99994 * 174.82265 * 16 13 12 19 19 N 1.31515 * 119.99910 * 164.38857 * 18 16 13 20 20 Si 1.86806 * 120.00087 * 344.39320 * 18 16 13 21 21 H 1.48496 * 109.46854 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.46845 * 300.00193 * 20 18 16 23 23 H 1.48502 * 109.46989 * 59.99852 * 20 18 16 24 24 H 1.09000 * 109.46655 * 269.97565 * 1 2 3 25 25 H 1.09002 * 109.46676 * 29.97249 * 1 2 3 26 26 H 1.09000 * 109.47119 * 149.97334 * 1 2 3 27 27 H 1.07994 * 120.18396 * 359.96298 * 4 3 2 28 28 H 1.07996 * 119.67966 * 180.02562 * 7 5 4 29 29 H 1.07995 * 120.02547 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99471 * 54.09933 * 15 13 12 31 31 H 1.00901 * 110.99943 * 178.04817 * 15 13 12 32 32 H 0.96993 * 120.00200 * 354.84494 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1470 2.5550 0.0010 5 6 3.2154 3.4252 0.0001 6 9 2.9966 4.7583 0.0005 7 6 4.5177 2.9382 -0.0012 8 6 4.7602 1.5825 -0.0011 9 6 3.6962 0.6866 -0.0002 10 7 3.6168 -0.6892 0.0060 11 1 4.3773 -1.2914 0.0105 12 6 2.3055 -1.0792 -0.0005 13 6 1.8279 -2.5085 -0.0006 14 1 0.9659 -2.6036 -0.6609 15 7 2.9070 -3.3853 -0.4749 16 6 1.4352 -2.9071 1.3987 17 1 1.6006 -2.2263 2.2206 18 6 0.8648 -4.1409 1.6296 19 7 0.8031 -4.6181 2.8536 20 14 0.1797 -5.1348 0.2040 21 1 -0.3748 -6.4145 0.7141 22 1 -0.8965 -4.3617 -0.4663 23 1 1.2653 -5.4179 -0.7689 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.1365 2.9359 0.0014 28 1 5.3472 3.6297 -0.0014 29 1 5.7758 1.2152 -0.0025 30 1 3.7495 -3.2448 0.0623 31 1 2.6221 -4.3530 -0.4541 32 1 1.2246 -4.1378 3.5832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259679518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -20.050517 kcal Electronic energy + Delta-G solvation = -17519.782271 eV Core-core repulsion = 14586.628069 eV Total energy + Delta-G solvation = -2933.154202 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.75495 -42.28966 -38.14866 -36.20328 -34.01930 -33.79518 -31.10962 -29.76091 -28.20047 -27.11950 -24.71864 -23.09465 -22.02985 -20.10125 -19.86945 -18.85959 -18.19581 -17.16543 -16.67969 -16.53014 -16.07385 -15.75718 -15.30795 -14.98373 -14.73952 -14.34194 -14.10461 -13.84197 -13.81827 -13.66160 -13.31298 -13.21166 -12.57188 -12.24469 -12.08384 -11.91730 -11.69428 -11.41382 -10.70603 -10.56998 -9.65783 -9.10474 -8.76396 -8.42093 -6.52870 0.04675 0.44863 1.43823 1.51783 1.70158 1.76389 2.19940 2.41561 2.74250 2.97120 3.30252 3.67302 3.84239 3.97421 4.14693 4.23669 4.38567 4.45149 4.72599 4.80031 4.85586 4.92632 5.04172 5.12009 5.16545 5.23101 5.41318 5.56983 5.81427 5.87589 5.92134 6.14374 6.33166 6.41751 6.62426 6.71145 7.28080 8.52193 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039854 B = 0.005883 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.394228 B = 4758.149007 C = 5018.463307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.215 4.215 3 C -0.096 4.096 4 C -0.120 4.120 5 C 0.055 3.945 6 F -0.148 7.148 7 C -0.135 4.135 8 C -0.093 4.093 9 C 0.068 3.932 10 N -0.577 5.577 11 H 0.423 0.577 12 C 0.132 3.868 13 C 0.241 3.759 14 H 0.061 0.939 15 N -0.846 5.846 16 C -0.619 4.619 17 H 0.014 0.986 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 1.079 2.921 21 H -0.290 1.290 22 H -0.264 1.264 23 H -0.235 1.235 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.327 0.673 31 H 0.339 0.661 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 10.133 -8.347 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.221 4.221 3 C -0.101 4.101 4 C -0.139 4.139 5 C 0.035 3.965 6 F -0.127 7.127 7 C -0.154 4.154 8 C -0.113 4.113 9 C -0.039 4.039 10 N -0.180 5.180 11 H 0.262 0.738 12 C 0.022 3.978 13 C 0.130 3.870 14 H 0.079 0.921 15 N -0.378 5.378 16 C -0.659 4.659 17 H 0.032 0.968 18 C -0.209 4.209 19 N -0.561 5.561 20 Si 0.900 3.100 21 H -0.216 1.216 22 H -0.189 1.189 23 H -0.160 1.160 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.184 0.816 29 H 0.177 0.823 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.639 9.081 -9.408 14.240 hybrid contribution 0.820 0.905 2.195 2.512 sum 6.459 9.986 -7.214 13.910 Atomic orbital electron populations 1.19962 0.89080 1.02047 1.00951 1.20170 0.96126 0.90007 1.15822 1.18995 0.92828 0.92639 1.05678 1.20437 0.99331 0.90818 1.03357 1.17396 0.94384 0.76798 1.07955 1.91444 1.95764 1.30877 1.94617 1.20974 0.95447 0.95530 1.03459 1.20149 0.97647 0.90753 1.02752 1.18640 0.95891 0.83796 1.05587 1.41594 1.07271 1.04741 1.64379 0.73846 1.20435 0.82943 0.95944 0.98489 1.17911 0.91246 0.84183 0.93679 0.92117 1.59782 1.07291 1.10823 1.59865 1.22558 1.47046 1.02774 0.93525 0.96796 1.27199 0.94046 0.97024 1.02641 1.70957 1.43415 1.40396 1.01308 0.83601 0.78391 0.75206 0.72809 1.21600 1.18946 1.15963 0.93436 0.90654 0.92248 0.84441 0.81641 0.82268 0.86162 0.84569 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.27 10.17 71.24 0.72 -1.55 16 2 C -0.21 -8.52 6.31 -18.62 -0.12 -8.64 16 3 C -0.10 -3.45 6.35 -20.20 -0.13 -3.58 16 4 C -0.12 -3.77 10.07 22.51 0.23 -3.55 16 5 C 0.05 1.55 7.29 22.35 0.16 1.71 16 6 F -0.15 -4.09 17.26 44.97 0.78 -3.32 16 7 C -0.13 -3.20 9.99 22.34 0.22 -2.97 16 8 C -0.09 -2.32 10.06 22.35 0.22 -2.09 16 9 C 0.07 2.24 7.27 39.00 0.28 2.53 16 10 N -0.58 -19.89 5.88 -175.88 -1.03 -20.93 16 11 H 0.42 12.43 7.80 -92.70 -0.72 11.71 16 12 C 0.13 5.38 6.00 40.87 0.25 5.63 16 13 C 0.24 10.46 2.33 43.42 0.10 10.57 16 14 H 0.06 2.67 6.11 -2.39 -0.01 2.66 16 15 N -0.85 -32.20 9.12 -174.94 -1.60 -33.79 16 16 C -0.62 -32.60 9.05 25.60 0.23 -32.37 16 17 H 0.01 0.84 7.99 -2.91 -0.02 0.81 16 18 C -0.01 -0.47 5.38 84.65 0.46 -0.01 16 19 N -0.93 -54.78 13.70 21.45 0.29 -54.49 16 20 Si 1.08 45.24 26.42 68.60 1.81 47.05 16 21 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.24 -8.41 5.69 99.48 0.57 -7.84 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.06 2.14 7.28 -2.39 -0.02 2.12 16 27 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 28 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.33 11.62 7.81 -89.69 -0.70 10.92 16 31 H 0.34 12.98 5.49 -89.69 -0.49 12.48 16 32 H 0.25 15.43 8.73 -92.71 -0.81 14.62 16 Total: -1.00 -62.41 274.22 1.98 -60.44 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: -0.91 Total: 39.37 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 2.63 Total: -34.34 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -2.34 Total: -109.21 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.81 Total: 47.05 kcal Total: -62.41 1.98 -60.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.386 kcal (2) G-P(sol) polarization free energy of solvation -62.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds