Wall clock time and date at job start Mon Mar 30 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.46489 * 126.49553 * 2 1 4 4 C 1.39673 * 133.97047 * 359.93976 * 3 2 1 5 5 C 1.37787 * 119.62980 * 180.31443 * 4 3 2 6 6 F 1.35095 * 119.83705 * 179.97438 * 5 4 3 7 7 C 1.39042 * 120.33138 * 359.97438 * 5 4 3 8 8 C 1.37713 * 120.64755 * 0.03678 * 7 5 4 9 9 C 1.39095 * 119.95598 * 359.96024 * 8 7 5 10 10 N 1.37811 * 133.40030 * 179.97438 * 9 8 7 11 11 H 0.97005 * 125.06673 * 0.02749 * 10 9 8 12 12 C 1.34239 * 126.49433 * 179.83300 * 2 1 3 13 13 C 1.50701 * 125.03506 * 0.03624 * 12 2 1 14 14 H 1.09002 * 109.47060 * 324.71550 * 13 12 2 15 15 N 1.46901 * 109.46921 * 204.71368 * 13 12 2 16 16 C 1.50699 * 109.47269 * 84.71403 * 13 12 2 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47438 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47045 * 120.00577 * 20 18 16 23 23 H 1.48501 * 109.46950 * 240.00369 * 20 18 16 24 24 H 1.08996 * 109.47568 * 270.15947 * 1 2 3 25 25 H 1.09003 * 109.47190 * 30.16270 * 1 2 3 26 26 H 1.09008 * 109.46898 * 150.15930 * 1 2 3 27 27 H 1.07997 * 120.18322 * 0.30066 * 4 3 2 28 28 H 1.07995 * 119.67327 * 180.02562 * 7 5 4 29 29 H 1.08001 * 120.02108 * 179.97438 * 8 7 5 30 30 H 1.00898 * 111.00245 * 299.99784 * 15 13 12 31 31 H 1.00904 * 111.00313 * 63.95601 * 15 13 12 32 32 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1469 2.5551 -0.0011 5 6 3.2152 3.4252 -0.0073 6 9 2.9963 4.7583 -0.0088 7 6 4.5175 2.9382 -0.0119 8 6 4.7601 1.5826 -0.0112 9 6 3.6961 0.6867 -0.0049 10 7 3.6167 -0.6892 -0.0030 11 1 4.3773 -1.2913 -0.0058 12 6 2.3054 -1.0792 0.0031 13 6 1.8279 -2.5085 0.0065 14 1 0.9168 -2.5859 0.5999 15 7 2.8659 -3.3701 0.5883 16 6 1.5453 -2.9472 -1.4073 17 1 1.6968 -2.2597 -2.2263 18 6 1.0945 -4.2263 -1.6551 19 7 0.9106 -5.0636 -0.6577 20 14 0.7449 -4.7702 -3.4077 21 1 1.0302 -3.6500 -4.3399 22 1 1.6088 -5.9290 -3.7479 23 1 -0.6818 -5.1641 -3.5284 24 1 -0.3634 0.0029 1.0276 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5114 27 1 1.1363 2.9359 0.0027 28 1 5.3470 3.6298 -0.0164 29 1 5.7757 1.2153 -0.0153 30 1 3.7211 -3.3160 0.0557 31 1 3.0277 -3.1378 1.5568 32 1 0.5931 -5.9634 -0.8320 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259679521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:13 Heat of formation + Delta-G solvation = 2.430094 kcal Electronic energy + Delta-G solvation = -17460.704072 eV Core-core repulsion = 14528.524702 eV Total energy + Delta-G solvation = -2932.179370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.55938 -40.92410 -36.72663 -34.13244 -32.61402 -31.50072 -29.79832 -28.29791 -26.53440 -25.63305 -23.23131 -21.85241 -20.65599 -18.67733 -17.45066 -16.93026 -16.61326 -15.71005 -15.30964 -14.93712 -14.49840 -14.32414 -13.95706 -13.74418 -13.12046 -12.61425 -12.52703 -12.46837 -12.23936 -12.00771 -11.45801 -11.30316 -11.02694 -10.92058 -10.71173 -10.47844 -10.01421 -9.43438 -9.20962 -8.57516 -7.69427 -7.42544 -7.08309 -6.01882 -4.18644 1.29225 1.68724 3.21198 3.25576 3.34770 3.40117 3.53066 4.00174 4.38822 4.54689 4.86986 5.10917 5.21572 5.38928 5.47596 5.64580 5.95495 6.01641 6.05446 6.08355 6.27975 6.33920 6.38019 6.41765 6.61326 6.82202 7.01493 7.11965 7.34980 7.54369 7.76706 7.89428 8.05562 8.39515 8.72484 8.94516 9.51369 11.01527 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.005725 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.680556 B = 4889.756911 C = 5074.426446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.199 4.199 3 C -0.068 4.068 4 C -0.112 4.112 5 C 0.059 3.941 6 F -0.150 7.150 7 C -0.149 4.149 8 C -0.099 4.099 9 C 0.077 3.923 10 N -0.589 5.589 11 H 0.410 0.590 12 C 0.111 3.889 13 C 0.276 3.724 14 H 0.068 0.932 15 N -0.812 5.812 16 C -0.534 4.534 17 H 0.057 0.943 18 C 0.086 3.914 19 N -0.844 5.844 20 Si 0.887 3.113 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.314 0.686 31 H 0.302 0.698 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 10.579 2.389 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.205 4.205 3 C -0.074 4.074 4 C -0.131 4.131 5 C 0.038 3.962 6 F -0.129 7.129 7 C -0.169 4.169 8 C -0.120 4.120 9 C -0.030 4.030 10 N -0.192 5.192 11 H 0.247 0.753 12 C 0.000 4.000 13 C 0.165 3.835 14 H 0.085 0.915 15 N -0.338 5.338 16 C -0.572 4.572 17 H 0.075 0.925 18 C -0.122 4.122 19 N -0.478 5.478 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.412 9.697 2.300 10.899 hybrid contribution 0.854 0.570 -0.884 1.355 sum 5.266 10.267 1.417 11.625 Atomic orbital electron populations 1.20024 0.89628 1.02372 1.00751 1.19917 0.95356 0.89138 1.16084 1.18977 0.92567 0.92291 1.03565 1.20323 0.98205 0.91368 1.03238 1.17231 0.93854 0.76823 1.08275 1.91431 1.95698 1.31134 1.94677 1.20541 0.95148 0.95125 1.06044 1.19744 0.96779 0.91163 1.04312 1.18255 0.95243 0.83954 1.05543 1.41792 1.08019 1.04251 1.65110 0.75273 1.22664 0.81284 1.00386 0.95664 1.18169 0.91483 0.76636 0.97166 0.91491 1.59073 1.11400 1.60193 1.03106 1.20788 1.47877 0.98134 0.90440 0.92485 1.24928 0.94269 0.96444 0.96535 1.70098 1.42038 1.05528 1.30154 0.86637 0.77993 0.78665 0.85243 1.19817 1.21018 1.20856 0.93010 0.93061 0.90330 0.85321 0.85212 0.85834 0.87365 0.88746 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.02 36.01 0.36 -0.87 16 2 C -0.20 -3.86 6.31 -102.71 -0.65 -4.51 16 3 C -0.07 -1.24 6.35 -105.14 -0.67 -1.91 16 4 C -0.11 -1.82 10.07 -39.21 -0.40 -2.22 16 5 C 0.06 0.90 7.29 -39.45 -0.29 0.61 16 6 F -0.15 -2.27 17.26 2.25 0.04 -2.23 16 7 C -0.15 -2.05 9.99 -39.48 -0.39 -2.44 16 8 C -0.10 -1.40 10.06 -39.46 -0.40 -1.80 16 9 C 0.08 1.31 7.27 -83.96 -0.61 0.70 16 10 N -0.59 -10.13 5.90 -6.94 -0.04 -10.17 16 11 H 0.41 6.09 8.01 -40.82 -0.33 5.76 16 12 C 0.11 2.22 5.97 -81.78 -0.49 1.73 16 13 C 0.28 6.25 2.54 -70.02 -0.18 6.08 16 14 H 0.07 1.67 7.94 -51.93 -0.41 1.26 16 15 N -0.81 -17.14 8.39 -6.65 -0.06 -17.20 16 16 C -0.53 -13.65 8.71 -34.44 -0.30 -13.95 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.09 2.25 5.39 -17.82 -0.10 2.16 16 19 N -0.84 -23.11 12.77 55.43 0.71 -22.41 16 20 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.50 7.82 -51.92 -0.41 1.09 16 27 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.31 6.18 8.06 -39.29 -0.32 5.87 16 31 H 0.30 5.67 9.06 -39.29 -0.36 5.32 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -28.15 282.55 -7.69 -35.84 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -3.47 Total: 12.91 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -4.10 Total: -16.42 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.61 Total: -49.77 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.15 -7.69 -35.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.272 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds