Wall clock time and date at job start Mon Mar 30 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.46489 * 126.49553 * 2 1 4 4 C 1.39673 * 133.97047 * 359.93976 * 3 2 1 5 5 C 1.37787 * 119.62980 * 180.31443 * 4 3 2 6 6 F 1.35095 * 119.83705 * 179.97438 * 5 4 3 7 7 C 1.39042 * 120.33138 * 359.97438 * 5 4 3 8 8 C 1.37713 * 120.64755 * 0.03678 * 7 5 4 9 9 C 1.39095 * 119.95598 * 359.96024 * 8 7 5 10 10 N 1.37811 * 133.40030 * 179.97438 * 9 8 7 11 11 H 0.97005 * 125.06673 * 0.02749 * 10 9 8 12 12 C 1.34239 * 126.49433 * 179.83300 * 2 1 3 13 13 C 1.50701 * 125.03506 * 0.03624 * 12 2 1 14 14 H 1.09002 * 109.47060 * 324.71550 * 13 12 2 15 15 N 1.46901 * 109.46921 * 204.71368 * 13 12 2 16 16 C 1.50699 * 109.47269 * 84.71403 * 13 12 2 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47438 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47045 * 120.00577 * 20 18 16 23 23 H 1.48501 * 109.46950 * 240.00369 * 20 18 16 24 24 H 1.08996 * 109.47568 * 270.15947 * 1 2 3 25 25 H 1.09003 * 109.47190 * 30.16270 * 1 2 3 26 26 H 1.09008 * 109.46898 * 150.15930 * 1 2 3 27 27 H 1.07997 * 120.18322 * 0.30066 * 4 3 2 28 28 H 1.07995 * 119.67327 * 180.02562 * 7 5 4 29 29 H 1.08001 * 120.02108 * 179.97438 * 8 7 5 30 30 H 1.00898 * 111.00245 * 299.99784 * 15 13 12 31 31 H 1.00904 * 111.00313 * 63.95601 * 15 13 12 32 32 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1469 2.5551 -0.0011 5 6 3.2152 3.4252 -0.0073 6 9 2.9963 4.7583 -0.0088 7 6 4.5175 2.9382 -0.0119 8 6 4.7601 1.5826 -0.0112 9 6 3.6961 0.6867 -0.0049 10 7 3.6167 -0.6892 -0.0030 11 1 4.3773 -1.2913 -0.0058 12 6 2.3054 -1.0792 0.0031 13 6 1.8279 -2.5085 0.0065 14 1 0.9168 -2.5859 0.5999 15 7 2.8659 -3.3701 0.5883 16 6 1.5453 -2.9472 -1.4073 17 1 1.6968 -2.2597 -2.2263 18 6 1.0945 -4.2263 -1.6551 19 7 0.9106 -5.0636 -0.6577 20 14 0.7449 -4.7702 -3.4077 21 1 1.0302 -3.6500 -4.3399 22 1 1.6088 -5.9290 -3.7479 23 1 -0.6818 -5.1641 -3.5284 24 1 -0.3634 0.0029 1.0276 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5114 27 1 1.1363 2.9359 0.0027 28 1 5.3470 3.6298 -0.0164 29 1 5.7757 1.2153 -0.0153 30 1 3.7211 -3.3160 0.0557 31 1 3.0277 -3.1378 1.5568 32 1 0.5931 -5.9634 -0.8320 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259679521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:12 Heat of formation + Delta-G solvation = -14.944631 kcal Electronic energy + Delta-G solvation = -17461.457497 eV Core-core repulsion = 14528.524702 eV Total energy + Delta-G solvation = -2932.932794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.74501 -42.25838 -38.05954 -35.83663 -33.96985 -33.39072 -31.06323 -29.61929 -28.25065 -27.19816 -24.78067 -23.14046 -22.09743 -20.08286 -18.74967 -18.60053 -18.14176 -17.05513 -16.54926 -16.49611 -16.14558 -15.94111 -15.34511 -14.95235 -14.54069 -14.17805 -13.99132 -13.80726 -13.61866 -13.47012 -13.15022 -12.83320 -12.75446 -12.56542 -12.17800 -11.95978 -11.67079 -11.27338 -10.59264 -10.51170 -9.14133 -8.94824 -8.47893 -8.00253 -6.23153 0.06657 0.46278 1.41627 1.45352 1.54305 1.79348 2.20879 2.47273 2.76234 3.22596 3.33982 3.70700 3.95378 4.13388 4.26686 4.30142 4.40033 4.54619 4.77378 4.86921 4.91315 4.97541 5.14443 5.20942 5.25496 5.27164 5.46812 5.73153 5.82915 5.90728 6.05355 6.21762 6.58125 6.70516 7.00580 7.13618 7.49664 9.01115 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.005725 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.680556 B = 4889.756911 C = 5074.426446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.211 4.211 3 C -0.096 4.096 4 C -0.120 4.120 5 C 0.054 3.946 6 F -0.149 7.149 7 C -0.136 4.136 8 C -0.093 4.093 9 C 0.069 3.931 10 N -0.582 5.582 11 H 0.419 0.581 12 C 0.088 3.912 13 C 0.287 3.713 14 H 0.035 0.965 15 N -0.820 5.820 16 C -0.539 4.539 17 H 0.042 0.958 18 C 0.043 3.957 19 N -0.874 5.874 20 Si 0.945 3.055 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.280 1.280 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.137 0.863 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.323 0.677 31 H 0.316 0.684 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 12.096 2.066 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.218 4.218 3 C -0.101 4.101 4 C -0.140 4.140 5 C 0.034 3.966 6 F -0.128 7.128 7 C -0.155 4.155 8 C -0.114 4.114 9 C -0.038 4.038 10 N -0.185 5.185 11 H 0.258 0.742 12 C -0.024 4.024 13 C 0.176 3.824 14 H 0.053 0.947 15 N -0.348 5.348 16 C -0.578 4.578 17 H 0.061 0.939 18 C -0.162 4.162 19 N -0.510 5.510 20 Si 0.771 3.229 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.206 1.206 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.155 0.845 28 H 0.182 0.818 29 H 0.176 0.824 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.035 11.220 1.977 12.892 hybrid contribution 0.396 0.261 -0.749 0.887 sum 6.431 11.481 1.227 13.216 Atomic orbital electron populations 1.20002 0.89184 1.01952 1.01359 1.20245 0.96120 0.89986 1.15421 1.19071 0.92933 0.92658 1.05469 1.20450 0.99270 0.90897 1.03358 1.17406 0.94402 0.76788 1.07998 1.91440 1.95764 1.30931 1.94623 1.20962 0.95423 0.95552 1.03575 1.20137 0.97633 0.90762 1.02825 1.18618 0.95828 0.83806 1.05572 1.41628 1.07234 1.04768 1.64906 0.74192 1.22103 0.82844 0.99038 0.98423 1.17652 0.90941 0.78681 0.95133 0.94720 1.58849 1.11514 1.60308 1.04097 1.20974 1.47365 0.97851 0.91582 0.93932 1.25552 0.94319 0.96648 0.99633 1.70196 1.43301 1.05734 1.31728 0.85739 0.77798 0.77994 0.81348 1.19991 1.20723 1.20565 0.91912 0.91352 0.92704 0.84501 0.81759 0.82371 0.86409 0.87228 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.42 10.02 71.24 0.71 -1.71 16 2 C -0.21 -8.27 6.31 -18.63 -0.12 -8.39 16 3 C -0.10 -3.38 6.35 -20.20 -0.13 -3.51 16 4 C -0.12 -3.73 10.07 22.51 0.23 -3.50 16 5 C 0.05 1.51 7.29 22.36 0.16 1.68 16 6 F -0.15 -4.07 17.26 44.97 0.78 -3.29 16 7 C -0.14 -3.17 9.99 22.34 0.22 -2.95 16 8 C -0.09 -2.28 10.06 22.35 0.22 -2.06 16 9 C 0.07 2.21 7.27 38.99 0.28 2.49 16 10 N -0.58 -19.50 5.90 -175.88 -1.04 -20.53 16 11 H 0.42 11.95 8.01 -92.70 -0.74 11.21 16 12 C 0.09 3.53 5.97 40.87 0.24 3.78 16 13 C 0.29 13.35 2.54 43.42 0.11 13.46 16 14 H 0.04 1.83 7.94 -2.39 -0.02 1.81 16 15 N -0.82 -34.97 8.39 -174.95 -1.47 -36.44 16 16 C -0.54 -28.15 8.71 25.60 0.22 -27.93 16 17 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 18 C 0.04 2.29 5.39 84.65 0.46 2.74 16 19 N -0.87 -48.62 12.77 21.45 0.27 -48.35 16 20 Si 0.94 42.43 29.54 68.60 2.03 44.46 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.19 7.82 -2.38 -0.02 2.17 16 27 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 29 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.32 12.68 8.06 -89.70 -0.72 11.96 16 31 H 0.32 11.92 9.06 -89.69 -0.81 11.11 16 32 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -60.21 282.55 2.10 -58.12 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -1.10 Total: 31.94 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 2.62 Total: -25.89 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -2.23 Total: -105.32 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -60.21 2.10 -58.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.171 kcal (2) G-P(sol) polarization free energy of solvation -60.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds