Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47201 * 109.46786 * 2 1 4 4 N 2.60804 * 109.46877 * 0.02562 * 2 1 3 5 5 C 1.52990 * 109.47647 * 239.99564 * 2 1 3 6 6 C 1.50706 * 109.47140 * 60.00292 * 5 2 1 7 7 H 1.07994 * 119.99681 * 359.97438 * 6 5 2 8 8 C 1.37878 * 119.99758 * 180.02562 * 6 5 2 9 9 N 1.31503 * 120.00330 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99523 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47095 * 89.99814 * 10 8 6 12 12 H 1.48497 * 109.47144 * 209.99817 * 10 8 6 13 13 H 1.48498 * 109.47438 * 329.99779 * 10 8 6 14 14 C 1.50702 * 109.46792 * 119.99207 * 2 1 3 15 15 C 1.38146 * 120.02207 * 114.28623 * 14 2 1 16 16 C 1.38439 * 120.04969 * 179.97438 * 15 14 2 17 17 F 1.35103 * 119.95131 * 179.97438 * 16 15 14 18 18 C 1.38492 * 120.09669 * 359.97438 * 16 15 14 19 19 C 1.38096 * 120.05150 * 0.02852 * 18 16 15 20 20 C 1.38854 * 120.02924 * 294.01252 * 14 2 1 21 21 N 1.39829 * 120.04919 * 0.02562 * 20 14 2 22 22 H 1.09001 * 109.46516 * 64.94005 * 1 2 3 23 23 H 1.09003 * 109.46773 * 184.93408 * 1 2 3 24 24 H 1.08994 * 109.47470 * 304.94143 * 1 2 3 25 25 H 1.09000 * 109.47405 * 180.02562 * 5 2 1 26 26 H 1.09003 * 109.47251 * 300.00211 * 5 2 1 27 27 H 0.97002 * 119.99966 * 180.02562 * 9 8 6 28 28 H 1.07998 * 119.97652 * 0.02562 * 15 14 2 29 29 H 1.07998 * 119.97024 * 180.02562 * 18 16 15 30 30 H 1.07997 * 120.02179 * 180.02562 * 19 18 16 31 31 H 0.97004 * 119.99207 * 4.83062 * 21 20 14 32 32 H 0.96988 * 120.00041 * 184.83095 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3993 2.4589 0.0011 5 6 2.0401 -0.7213 -1.2491 6 6 1.5379 -0.0109 -2.4797 7 1 0.9167 0.8669 -2.3806 8 6 1.8707 -0.4824 -3.7319 9 7 2.6268 -1.5516 -3.8524 10 14 1.2476 0.3977 -5.2572 11 1 2.2255 1.4394 -5.6619 12 1 1.0823 -0.5817 -6.3610 13 1 -0.0605 1.0352 -4.9612 14 6 2.0323 -0.7103 1.2306 15 6 2.7265 -1.8983 1.1080 16 6 3.1886 -2.5510 2.2381 17 9 3.8668 -3.7131 2.1159 18 6 2.9566 -2.0145 3.4936 19 6 2.2631 -0.8271 3.6209 20 6 1.8026 -0.1682 2.4882 21 7 1.1047 1.0369 2.6144 22 1 -0.3632 0.4353 -0.9310 23 1 -0.3633 -1.0239 0.0884 24 1 -0.3634 0.5885 0.8423 25 1 3.1301 -0.7217 -1.2488 26 1 1.6768 -1.7490 -1.2491 27 1 2.8612 -1.8830 -4.7334 28 1 2.9095 -2.3179 0.1298 29 1 3.3184 -2.5251 4.3737 30 1 2.0829 -0.4089 4.6001 31 1 0.7200 1.4589 1.8302 32 1 1.0053 1.4507 3.4859 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = -0.707311 kcal Electronic energy + Delta-G solvation = -17699.412686 eV Core-core repulsion = 14767.097268 eV Total energy + Delta-G solvation = -2932.315418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.37166 -39.90861 -36.63608 -34.45703 -34.07213 -32.43144 -29.88135 -27.95397 -27.33893 -24.52078 -23.16960 -21.51148 -21.00299 -17.95036 -17.19488 -16.65694 -16.16960 -15.64968 -15.12273 -14.87748 -14.60904 -13.93293 -13.59946 -13.34118 -13.04254 -12.80745 -12.64895 -12.47337 -12.16673 -11.89377 -11.51746 -11.36478 -11.06799 -10.94057 -10.75763 -10.44068 -10.34462 -10.16145 -9.51309 -9.22332 -8.71940 -8.48600 -7.26629 -6.12679 -4.16002 1.45082 1.64574 3.27211 3.34404 3.36320 3.43755 3.48179 3.88690 3.98632 4.36897 4.56823 4.77607 4.96455 5.10454 5.25145 5.37996 5.57660 5.70291 5.78704 5.94217 6.11039 6.23556 6.32676 6.44905 6.49178 6.73250 6.77330 7.08578 7.36367 7.43829 7.56163 7.80360 7.82741 8.17742 8.27370 8.86492 9.49216 10.98151 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.007426 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.026578 B = 3769.408107 C = 4594.234850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.078 3.922 3 C 0.245 3.755 4 N -0.462 5.462 5 C 0.035 3.965 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.065 3.935 9 N -0.888 5.888 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.273 1.273 14 C -0.119 4.119 15 C -0.085 4.085 16 C 0.034 3.966 17 F -0.148 7.148 18 C -0.108 4.108 19 C -0.178 4.178 20 C 0.215 3.785 21 N -0.876 5.876 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.029 0.971 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.154 0.846 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.400 0.600 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -0.843 13.437 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 C -0.071 4.071 4 N -0.138 5.138 5 C -0.003 4.003 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.138 4.138 9 N -0.526 5.526 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.198 1.198 14 C -0.125 4.125 15 C -0.104 4.104 16 C 0.013 3.987 17 F -0.127 7.127 18 C -0.128 4.128 19 C -0.200 4.200 20 C 0.110 3.890 21 N -0.418 5.418 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.172 0.828 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.232 0.768 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.848 0.607 13.285 13.601 hybrid contribution -0.371 0.155 -0.925 1.009 sum -3.219 0.763 12.360 12.795 Atomic orbital electron populations 1.21907 0.91680 1.03134 1.02238 1.17316 0.96077 0.83117 0.96028 1.28950 0.92721 0.94344 0.91131 1.81038 1.09231 1.12970 1.10557 1.19334 0.97215 0.95822 0.87915 1.21100 1.32368 1.12483 0.90532 0.92326 1.24931 0.94893 0.94887 0.99091 1.69924 1.36170 1.22631 1.23908 0.86613 0.79352 0.79477 0.82760 1.20686 1.21053 1.19761 1.19101 1.04099 0.97179 0.92073 1.21191 0.95647 0.94381 0.99178 1.17412 1.01586 0.85540 0.94186 1.91452 1.78207 1.46124 1.96874 1.20792 0.99652 0.96332 0.96002 1.20276 1.05668 0.97162 0.96937 1.17695 0.91607 0.86666 0.93029 1.42854 1.62395 1.24148 1.12427 0.89829 0.90775 0.93867 0.95223 0.93789 0.92696 0.82847 0.85303 0.85607 0.76784 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.03 37.16 0.30 -1.82 16 2 C 0.08 1.46 0.47 -158.45 -0.08 1.38 16 3 C 0.25 4.95 10.34 -20.76 -0.21 4.73 16 4 N -0.46 -9.87 18.54 42.16 0.78 -9.09 16 5 C 0.03 0.80 2.69 -27.89 -0.08 0.72 16 6 C -0.53 -13.55 7.73 -34.44 -0.27 -13.82 16 7 H 0.06 1.49 6.40 -52.49 -0.34 1.15 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 10 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 C -0.12 -1.98 4.74 -104.43 -0.50 -2.48 16 15 C -0.08 -1.44 8.97 -39.54 -0.35 -1.79 16 16 C 0.03 0.53 7.30 -39.41 -0.29 0.24 16 17 F -0.15 -2.39 17.27 2.25 0.04 -2.35 16 18 C -0.11 -1.41 10.02 -39.54 -0.40 -1.81 16 19 C -0.18 -2.21 9.90 -39.39 -0.39 -2.60 16 20 C 0.22 3.07 6.40 -83.74 -0.54 2.53 16 21 N -0.88 -10.81 8.16 32.43 0.26 -10.54 16 22 H 0.08 1.45 6.47 -51.93 -0.34 1.12 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.04 0.58 5.76 -51.93 -0.30 0.28 16 25 H 0.03 0.74 7.78 -51.93 -0.40 0.34 16 26 H 0.04 1.02 7.25 -51.93 -0.38 0.65 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.15 2.79 5.91 -52.49 -0.31 2.48 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.40 5.35 4.37 -40.82 -0.18 5.18 16 32 H 0.39 3.70 8.85 -40.82 -0.36 3.34 16 LS Contribution 275.51 15.07 4.15 4.15 Total: -1.00 -28.97 275.51 -4.94 -33.91 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -3.00 Total: 5.30 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.89 Total: -13.06 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 1.78 Total: -43.84 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.97 -4.94 -33.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.201 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds