Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47201 * 109.46786 * 2 1 4 4 N 2.60804 * 109.46877 * 0.02562 * 2 1 3 5 5 C 1.52990 * 109.47647 * 239.99564 * 2 1 3 6 6 C 1.50706 * 109.47140 * 60.00292 * 5 2 1 7 7 H 1.07994 * 119.99681 * 359.97438 * 6 5 2 8 8 C 1.37878 * 119.99758 * 180.02562 * 6 5 2 9 9 N 1.31503 * 120.00330 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99523 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47095 * 89.99814 * 10 8 6 12 12 H 1.48497 * 109.47144 * 209.99817 * 10 8 6 13 13 H 1.48498 * 109.47438 * 329.99779 * 10 8 6 14 14 C 1.50702 * 109.46792 * 119.99207 * 2 1 3 15 15 C 1.38146 * 120.02207 * 114.28623 * 14 2 1 16 16 C 1.38439 * 120.04969 * 179.97438 * 15 14 2 17 17 F 1.35103 * 119.95131 * 179.97438 * 16 15 14 18 18 C 1.38492 * 120.09669 * 359.97438 * 16 15 14 19 19 C 1.38096 * 120.05150 * 0.02852 * 18 16 15 20 20 C 1.38854 * 120.02924 * 294.01252 * 14 2 1 21 21 N 1.39829 * 120.04919 * 0.02562 * 20 14 2 22 22 H 1.09001 * 109.46516 * 64.94005 * 1 2 3 23 23 H 1.09003 * 109.46773 * 184.93408 * 1 2 3 24 24 H 1.08994 * 109.47470 * 304.94143 * 1 2 3 25 25 H 1.09000 * 109.47405 * 180.02562 * 5 2 1 26 26 H 1.09003 * 109.47251 * 300.00211 * 5 2 1 27 27 H 0.97002 * 119.99966 * 180.02562 * 9 8 6 28 28 H 1.07998 * 119.97652 * 0.02562 * 15 14 2 29 29 H 1.07998 * 119.97024 * 180.02562 * 18 16 15 30 30 H 1.07997 * 120.02179 * 180.02562 * 19 18 16 31 31 H 0.97004 * 119.99207 * 4.83062 * 21 20 14 32 32 H 0.96988 * 120.00041 * 184.83095 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3993 2.4589 0.0011 5 6 2.0401 -0.7213 -1.2491 6 6 1.5379 -0.0109 -2.4797 7 1 0.9167 0.8669 -2.3806 8 6 1.8707 -0.4824 -3.7319 9 7 2.6268 -1.5516 -3.8524 10 14 1.2476 0.3977 -5.2572 11 1 2.2255 1.4394 -5.6619 12 1 1.0823 -0.5817 -6.3610 13 1 -0.0605 1.0352 -4.9612 14 6 2.0323 -0.7103 1.2306 15 6 2.7265 -1.8983 1.1080 16 6 3.1886 -2.5510 2.2381 17 9 3.8668 -3.7131 2.1159 18 6 2.9566 -2.0145 3.4936 19 6 2.2631 -0.8271 3.6209 20 6 1.8026 -0.1682 2.4882 21 7 1.1047 1.0369 2.6144 22 1 -0.3632 0.4353 -0.9310 23 1 -0.3633 -1.0239 0.0884 24 1 -0.3634 0.5885 0.8423 25 1 3.1301 -0.7217 -1.2488 26 1 1.6768 -1.7490 -1.2491 27 1 2.8612 -1.8830 -4.7334 28 1 2.9095 -2.3179 0.1298 29 1 3.3184 -2.5251 4.3737 30 1 2.0829 -0.4089 4.6001 31 1 0.7200 1.4589 1.8302 32 1 1.0053 1.4507 3.4859 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = -17.833874 kcal Electronic energy + Delta-G solvation = -17700.155350 eV Core-core repulsion = 14767.097268 eV Total energy + Delta-G solvation = -2933.058081 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.59492 -41.17323 -38.09271 -36.07612 -35.23123 -34.31369 -31.14795 -29.29426 -28.88627 -26.10403 -24.64840 -22.73556 -22.48594 -19.41658 -18.36333 -17.96688 -17.76448 -17.04845 -16.51720 -16.34566 -15.99388 -15.40225 -15.03006 -14.75299 -14.56000 -14.13146 -14.01784 -13.82249 -13.69037 -13.34398 -13.08925 -12.87361 -12.77565 -12.70869 -12.38056 -12.18391 -11.85759 -11.27749 -11.20648 -11.09423 -10.56673 -9.88404 -8.36208 -8.19408 -6.27750 0.30738 0.48787 1.39494 1.41587 1.50500 1.83297 1.87209 2.40511 2.69674 2.92907 3.14044 3.17576 3.55815 3.76917 3.94335 4.22999 4.27273 4.34577 4.53211 4.75505 4.95488 4.98712 5.08670 5.24000 5.35466 5.36460 5.41173 5.51539 5.53055 5.77655 5.94141 6.16950 6.46810 6.64918 6.84383 6.92529 7.40412 8.91827 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.007426 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.026578 B = 3769.408107 C = 4594.234850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.086 3.914 3 C 0.253 3.747 4 N -0.484 5.484 5 C 0.045 3.955 6 C -0.532 4.532 7 H 0.061 0.939 8 C 0.011 3.989 9 N -0.923 5.923 10 Si 0.948 3.052 11 H -0.285 1.285 12 H -0.280 1.280 13 H -0.260 1.260 14 C -0.141 4.141 15 C -0.103 4.103 16 C 0.015 3.985 17 F -0.157 7.157 18 C -0.093 4.093 19 C -0.163 4.163 20 C 0.218 3.782 21 N -0.867 5.867 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.074 0.926 25 H -0.003 1.003 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.395 0.605 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 0.061 15.690 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 C -0.064 4.064 4 N -0.160 5.160 5 C 0.007 3.993 6 C -0.570 4.570 7 H 0.079 0.921 8 C -0.188 4.188 9 N -0.563 5.563 10 Si 0.774 3.226 11 H -0.211 1.211 12 H -0.206 1.206 13 H -0.184 1.184 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.006 4.006 17 F -0.136 7.136 18 C -0.112 4.112 19 C -0.185 4.185 20 C 0.112 3.888 21 N -0.410 5.410 22 H 0.087 0.913 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.015 0.985 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.226 0.774 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.994 1.534 15.565 16.143 hybrid contribution 0.010 -0.127 -1.555 1.560 sum -3.984 1.407 14.011 14.634 Atomic orbital electron populations 1.21888 0.89656 1.04205 1.02794 1.17193 0.97591 0.81896 0.95107 1.29268 0.92088 0.94510 0.90485 1.81029 1.09998 1.13710 1.11250 1.19087 0.95059 0.95664 0.89498 1.21495 1.31638 1.12322 0.91580 0.92059 1.25724 0.95316 0.95638 1.02092 1.70044 1.37663 1.24156 1.24434 0.85699 0.79107 0.78310 0.79527 1.21117 1.20571 1.18447 1.18887 1.05978 0.97499 0.92312 1.21010 0.97192 0.95327 0.98728 1.17599 1.02449 0.85652 0.94946 1.91424 1.78500 1.46651 1.96993 1.21161 0.98159 0.96184 0.95710 1.20705 1.03632 0.96224 0.97935 1.17772 0.91387 0.87159 0.92518 1.42826 1.61492 1.23398 1.13251 0.91306 0.89928 0.90783 0.98507 0.94891 0.92763 0.85725 0.81990 0.81478 0.77359 0.75694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.03 71.98 0.58 -3.40 16 2 C 0.09 3.21 0.47 -54.73 -0.03 3.18 16 3 C 0.25 10.11 10.34 89.44 0.93 11.04 16 4 N -0.48 -20.37 18.54 20.01 0.37 -20.00 16 5 C 0.04 2.14 2.69 29.85 0.08 2.22 16 6 C -0.53 -27.95 7.73 25.60 0.20 -27.75 16 7 H 0.06 3.12 6.40 -2.91 -0.02 3.11 16 8 C 0.01 0.62 5.46 84.66 0.46 1.08 16 9 N -0.92 -53.54 13.29 21.45 0.28 -53.25 16 10 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 14 C -0.14 -4.64 4.74 -19.74 -0.09 -4.73 16 15 C -0.10 -3.60 8.97 22.30 0.20 -3.40 16 16 C 0.01 0.44 7.30 22.38 0.16 0.61 16 17 F -0.16 -5.09 17.27 44.97 0.78 -4.31 16 18 C -0.09 -2.11 10.02 22.30 0.22 -1.89 16 19 C -0.16 -3.34 9.90 22.39 0.22 -3.12 16 20 C 0.22 5.62 6.40 38.17 0.24 5.87 16 21 N -0.87 -18.54 8.16 -51.32 -0.42 -18.96 16 22 H 0.07 2.35 6.47 -2.39 -0.02 2.33 16 23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.07 1.83 5.76 -2.39 -0.01 1.82 16 25 H 0.00 -0.18 7.78 -2.39 -0.02 -0.20 16 26 H 0.03 1.63 7.25 -2.39 -0.02 1.61 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.12 4.96 5.91 -2.91 -0.02 4.94 16 29 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.39 9.52 4.37 -92.71 -0.41 9.11 16 32 H 0.41 5.99 8.85 -92.72 -0.82 5.17 16 Total: -1.00 -63.69 275.51 6.17 -57.52 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -0.04 Total: 14.01 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 3.18 Total: -20.28 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: 0.24 Total: -92.21 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.78 Total: -4.31 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.69 6.17 -57.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.686 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds