Wall clock time and date at job start Mon Mar 30 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38324 * 119.73139 * 2 1 4 4 C 1.38314 * 119.90549 * 179.54912 * 3 2 1 5 5 C 1.38744 * 119.17169 * 0.48206 * 4 3 2 6 6 C 1.37496 * 121.13066 * 0.20786 * 5 4 3 7 7 C 1.38283 * 119.73333 * 180.27842 * 2 1 3 8 8 C 1.51424 * 121.53778 * 178.83186 * 6 5 4 9 9 H 1.08998 * 109.58906 * 164.95970 * 8 6 5 10 10 C 1.50695 * 109.58432 * 44.52902 * 8 6 5 11 11 H 1.07999 * 120.00271 * 356.37854 * 10 8 6 12 12 C 1.37877 * 119.99739 * 176.38872 * 10 8 6 13 13 N 1.31512 * 120.00116 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00163 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47185 * 59.98910 * 14 12 10 16 16 H 1.48495 * 109.47269 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.46663 * 299.99469 * 14 12 10 18 18 C 1.53113 * 108.76537 * 284.74411 * 8 6 5 19 19 C 1.51158 * 111.42876 * 91.46821 * 18 8 6 20 20 C 1.51490 * 116.27480 * 288.35242 * 19 18 8 21 21 S 1.77490 * 120.01163 * 180.67072 * 5 4 3 22 22 H 1.08998 * 109.46920 * 269.72631 * 1 2 3 23 23 H 1.08998 * 109.47233 * 29.72364 * 1 2 3 24 24 H 1.09000 * 109.47130 * 149.72767 * 1 2 3 25 25 H 1.08007 * 120.04579 * 359.79328 * 3 2 1 26 26 H 1.07998 * 120.41604 * 180.22857 * 4 3 2 27 27 H 1.08000 * 120.13748 * 359.97438 * 7 2 1 28 28 H 0.97001 * 120.00456 * 180.02562 * 13 12 10 29 29 H 1.08991 * 109.09165 * 330.96511 * 18 8 6 30 30 H 1.09001 * 109.08298 * 211.96597 * 18 8 6 31 31 H 1.09003 * 108.12203 * 166.57742 * 19 18 8 32 32 H 1.09007 * 108.11892 * 50.11488 * 19 18 8 33 33 H 1.09005 * 109.39948 * 309.55413 * 20 19 18 34 34 H 1.09004 * 109.33735 * 189.76844 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1930 1.2012 0.0000 4 6 3.5761 1.2054 0.0094 5 6 4.2561 -0.0040 0.0086 6 6 3.5787 -1.2004 -0.0057 7 6 2.1929 -1.2008 -0.0058 8 6 4.3115 -2.5252 -0.0330 9 1 3.6225 -3.3293 0.2257 10 6 5.4493 -2.4936 0.9545 11 1 5.6644 -1.5877 1.5018 12 6 6.2161 -3.6211 1.1591 13 7 5.9541 -4.7243 0.4928 14 14 7.6262 -3.5822 2.3836 15 1 7.1006 -3.2558 3.7336 16 1 8.2883 -4.9109 2.4186 17 1 8.6104 -2.5489 1.9725 18 6 4.8618 -2.7547 -1.4433 19 6 6.2675 -2.2165 -1.5819 20 6 6.4087 -0.7083 -1.6059 21 16 6.0307 -0.0247 0.0386 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 0.8924 -0.5095 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6494 2.1344 -0.0034 26 1 4.1201 2.1384 0.0132 27 1 1.6508 -2.1348 -0.0100 28 1 6.4932 -5.5177 0.6370 29 1 4.2156 -2.2538 -2.1640 30 1 4.8672 -3.8241 -1.6540 31 1 6.6923 -2.6116 -2.5047 32 1 6.8605 -2.5993 -0.7512 33 1 5.7179 -0.2916 -2.3389 34 1 7.4303 -0.4459 -1.8811 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:40 Heat of formation + Delta-G solvation = 18.709108 kcal Electronic energy + Delta-G solvation = -16350.355732 eV Core-core repulsion = 13952.802698 eV Total energy + Delta-G solvation = -2397.553034 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99613 -35.92058 -32.25617 -31.86467 -31.06404 -27.99622 -26.58874 -25.23526 -23.17303 -21.67862 -20.57933 -18.79669 -16.71833 -16.04034 -15.02088 -14.91185 -14.37664 -13.97897 -13.71805 -13.52321 -13.17875 -12.89976 -12.28348 -12.15415 -11.91920 -11.78285 -11.59757 -11.13028 -10.88075 -10.70142 -10.55574 -10.31399 -10.02690 -9.78979 -9.27916 -9.08585 -8.87447 -8.24320 -8.15946 -7.81772 -6.18849 -5.90750 -3.78204 1.68971 2.02842 2.71584 3.41045 3.42817 3.45105 3.50289 4.33978 4.56533 5.23189 5.31891 5.43120 5.52294 5.67402 5.68127 5.78729 5.88419 5.96490 6.03823 6.16464 6.22847 6.44677 6.46843 6.59939 6.71619 6.75974 6.92043 7.07777 7.12376 7.28122 7.51406 7.61420 7.77656 7.81009 8.11740 8.46125 9.16183 9.71501 11.19317 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.009144 C = 0.008420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.785877 B = 3061.334279 C = 3324.706482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.100 4.100 6 C -0.004 4.004 7 C -0.135 4.135 8 C 0.069 3.931 9 H 0.043 0.957 10 C -0.482 4.482 11 H 0.084 0.916 12 C 0.058 3.942 13 N -0.901 5.901 14 Si 0.883 3.117 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.275 1.275 18 C -0.082 4.082 19 C -0.112 4.112 20 C -0.077 4.077 21 S -0.145 6.145 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.257 0.743 29 H 0.013 0.987 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 8.324 -3.553 10.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.171 4.171 4 C -0.102 4.102 5 C -0.211 4.211 6 C -0.007 4.007 7 C -0.155 4.155 8 C 0.051 3.949 9 H 0.061 0.939 10 C -0.521 4.521 11 H 0.102 0.898 12 C -0.142 4.142 13 N -0.541 5.541 14 Si 0.711 3.289 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.200 1.200 18 C -0.120 4.120 19 C -0.150 4.150 20 C -0.225 4.225 21 S 0.092 5.908 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.132 0.868 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.364 8.479 -2.767 9.930 hybrid contribution -0.114 -0.526 -0.303 0.618 sum -4.478 7.953 -3.070 9.630 Atomic orbital electron populations 1.20766 0.91957 1.02137 1.01887 1.19922 0.95497 0.93433 0.99283 1.20826 0.93813 0.96912 1.05504 1.21275 0.93829 0.96756 0.98339 1.21225 0.96905 0.94669 1.08344 1.20926 0.93141 0.96957 0.89655 1.21194 0.94008 0.96982 1.03327 1.18299 0.95280 0.87315 0.94027 0.93888 1.21475 1.11946 0.97945 1.20782 0.89842 1.24798 0.97898 0.95347 0.96131 1.69966 1.40189 1.01598 1.42353 0.86767 0.83110 0.76726 0.82250 1.20445 1.21795 1.20006 1.20979 0.94037 1.00414 0.96613 1.21022 1.00346 0.91705 1.01936 1.23188 1.02987 1.00808 0.95522 1.85111 0.99811 1.81343 1.24579 0.91540 0.92096 0.91832 0.86766 0.86009 0.86331 0.93313 0.96829 0.91206 0.95219 0.87704 0.91728 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.00 36.01 0.36 -1.00 16 2 C -0.08 -1.31 5.88 -104.57 -0.61 -1.93 16 3 C -0.15 -2.39 9.70 -39.52 -0.38 -2.77 16 4 C -0.08 -1.42 9.84 -39.37 -0.39 -1.80 16 5 C -0.10 -2.06 5.42 -39.66 -0.21 -2.27 16 6 C 0.00 -0.08 4.54 -104.41 -0.47 -0.55 16 7 C -0.14 -2.57 9.30 -39.44 -0.37 -2.94 16 8 C 0.07 1.68 2.30 -92.51 -0.21 1.47 16 9 H 0.04 1.13 7.91 -51.93 -0.41 0.72 16 10 C -0.48 -12.58 5.34 -34.44 -0.18 -12.76 16 11 H 0.08 2.23 5.28 -34.85 -0.18 2.04 16 12 C 0.06 1.55 3.78 -17.82 -0.07 1.48 16 13 N -0.90 -24.90 12.26 55.43 0.68 -24.22 16 14 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.08 -1.88 4.82 -27.60 -0.13 -2.01 16 19 C -0.11 -2.42 4.96 -28.42 -0.14 -2.56 16 20 C -0.08 -1.49 6.18 36.39 0.22 -1.26 16 21 S -0.15 -3.03 17.90 -107.50 -1.92 -4.96 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 24 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 25 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 26 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.12 2.12 7.97 -52.49 -0.42 1.70 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.01 0.28 7.77 -51.93 -0.40 -0.12 16 30 H 0.07 1.70 7.66 -51.93 -0.40 1.31 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 2.59 5.08 -51.93 -0.26 2.33 16 33 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -27.59 277.90 -9.26 -36.85 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.59 Total: 0.67 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -2.60 Total: -28.92 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.68 Total: -24.22 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -1.92 Total: -4.96 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.59 -9.26 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.557 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds