Wall clock time and date at job start Mon Mar 30 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38324 * 119.73139 * 2 1 4 4 C 1.38314 * 119.90549 * 179.54912 * 3 2 1 5 5 C 1.38744 * 119.17169 * 0.48206 * 4 3 2 6 6 C 1.37496 * 121.13066 * 0.20786 * 5 4 3 7 7 C 1.38283 * 119.73333 * 180.27842 * 2 1 3 8 8 C 1.51424 * 121.53778 * 178.83186 * 6 5 4 9 9 H 1.08998 * 109.58906 * 164.95970 * 8 6 5 10 10 C 1.50695 * 109.58432 * 44.52902 * 8 6 5 11 11 H 1.07999 * 120.00271 * 356.37854 * 10 8 6 12 12 C 1.37877 * 119.99739 * 176.38872 * 10 8 6 13 13 N 1.31512 * 120.00116 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00163 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47185 * 59.98910 * 14 12 10 16 16 H 1.48495 * 109.47269 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.46663 * 299.99469 * 14 12 10 18 18 C 1.53113 * 108.76537 * 284.74411 * 8 6 5 19 19 C 1.51158 * 111.42876 * 91.46821 * 18 8 6 20 20 C 1.51490 * 116.27480 * 288.35242 * 19 18 8 21 21 S 1.77490 * 120.01163 * 180.67072 * 5 4 3 22 22 H 1.08998 * 109.46920 * 269.72631 * 1 2 3 23 23 H 1.08998 * 109.47233 * 29.72364 * 1 2 3 24 24 H 1.09000 * 109.47130 * 149.72767 * 1 2 3 25 25 H 1.08007 * 120.04579 * 359.79328 * 3 2 1 26 26 H 1.07998 * 120.41604 * 180.22857 * 4 3 2 27 27 H 1.08000 * 120.13748 * 359.97438 * 7 2 1 28 28 H 0.97001 * 120.00456 * 180.02562 * 13 12 10 29 29 H 1.08991 * 109.09165 * 330.96511 * 18 8 6 30 30 H 1.09001 * 109.08298 * 211.96597 * 18 8 6 31 31 H 1.09003 * 108.12203 * 166.57742 * 19 18 8 32 32 H 1.09007 * 108.11892 * 50.11488 * 19 18 8 33 33 H 1.09005 * 109.39948 * 309.55413 * 20 19 18 34 34 H 1.09004 * 109.33735 * 189.76844 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1930 1.2012 0.0000 4 6 3.5761 1.2054 0.0094 5 6 4.2561 -0.0040 0.0086 6 6 3.5787 -1.2004 -0.0057 7 6 2.1929 -1.2008 -0.0058 8 6 4.3115 -2.5252 -0.0330 9 1 3.6225 -3.3293 0.2257 10 6 5.4493 -2.4936 0.9545 11 1 5.6644 -1.5877 1.5018 12 6 6.2161 -3.6211 1.1591 13 7 5.9541 -4.7243 0.4928 14 14 7.6262 -3.5822 2.3836 15 1 7.1006 -3.2558 3.7336 16 1 8.2883 -4.9109 2.4186 17 1 8.6104 -2.5489 1.9725 18 6 4.8618 -2.7547 -1.4433 19 6 6.2675 -2.2165 -1.5819 20 6 6.4087 -0.7083 -1.6059 21 16 6.0307 -0.0247 0.0386 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 0.8924 -0.5095 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6494 2.1344 -0.0034 26 1 4.1201 2.1384 0.0132 27 1 1.6508 -2.1348 -0.0100 28 1 6.4932 -5.5177 0.6370 29 1 4.2156 -2.2538 -2.1640 30 1 4.8672 -3.8241 -1.6540 31 1 6.6923 -2.6116 -2.5047 32 1 6.8605 -2.5993 -0.7512 33 1 5.7179 -0.2916 -2.3389 34 1 7.4303 -0.4459 -1.8811 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259727126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:40 Heat of formation + Delta-G solvation = 5.723012 kcal Electronic energy + Delta-G solvation = -16350.918851 eV Core-core repulsion = 13952.802698 eV Total energy + Delta-G solvation = -2398.116153 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45844 -37.63208 -33.83588 -33.56973 -32.58845 -29.65130 -27.86238 -27.08134 -24.89645 -23.09491 -22.09878 -20.56970 -18.21409 -17.90917 -16.75362 -16.51344 -16.11869 -15.49551 -15.20440 -14.89316 -14.61331 -14.47782 -13.82543 -13.71788 -13.51488 -13.14043 -12.98780 -12.86470 -12.60192 -12.46203 -12.19070 -12.12965 -11.72834 -11.41966 -11.08067 -10.88242 -10.62144 -10.27641 -9.58682 -9.32246 -7.97114 -7.85893 -5.85697 0.28449 0.60479 1.18804 1.44982 1.45911 1.53318 1.90969 2.53769 2.92770 3.35928 4.02031 4.07816 4.09968 4.19309 4.32307 4.51486 4.54698 4.58227 4.73641 4.82850 4.87709 4.92433 4.96416 5.04147 5.23212 5.26574 5.44539 5.49700 5.51860 5.67645 5.75770 5.91955 5.96605 6.04809 6.18707 6.49232 7.08872 7.63844 9.12449 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.009144 C = 0.008420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.785877 B = 3061.334279 C = 3324.706482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.080 4.080 5 C -0.117 4.117 6 C -0.035 4.035 7 C -0.153 4.153 8 C 0.070 3.930 9 H 0.007 0.993 10 C -0.476 4.476 11 H 0.078 0.922 12 C 0.019 3.981 13 N -0.926 5.926 14 Si 0.927 3.073 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.270 1.270 18 C -0.073 4.073 19 C -0.108 4.108 20 C -0.067 4.067 21 S -0.179 6.179 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.156 0.844 26 H 0.144 0.856 27 H 0.117 0.883 28 H 0.254 0.746 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 10.869 -3.900 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.159 4.159 4 C -0.102 4.102 5 C -0.229 4.229 6 C -0.038 4.038 7 C -0.173 4.173 8 C 0.051 3.949 9 H 0.026 0.974 10 C -0.516 4.516 11 H 0.095 0.905 12 C -0.178 4.178 13 N -0.568 5.568 14 Si 0.755 3.245 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.196 1.196 18 C -0.112 4.112 19 C -0.147 4.147 20 C -0.214 4.214 21 S 0.058 5.942 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.086 0.914 25 H 0.174 0.826 26 H 0.162 0.838 27 H 0.135 0.865 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.505 11.036 -3.109 12.719 hybrid contribution 0.125 -1.266 -0.201 1.288 sum -5.380 9.770 -3.310 11.634 Atomic orbital electron populations 1.20846 0.88781 1.03762 1.03158 1.20356 0.97775 0.92403 0.96872 1.21311 0.93235 0.98367 1.02968 1.21580 0.94845 0.96382 0.97366 1.21309 0.96193 0.95418 1.09950 1.20701 0.94286 0.95958 0.92855 1.21307 0.93219 0.98486 1.04253 1.18115 0.94326 0.88260 0.94209 0.97444 1.21636 1.11985 0.97335 1.20597 0.90450 1.25310 0.99674 0.95295 0.97475 1.70076 1.41078 1.01947 1.43739 0.86058 0.81255 0.76605 0.80564 1.20584 1.21791 1.19569 1.20825 0.95216 0.98872 0.96241 1.20926 0.98772 0.93696 1.01311 1.23168 1.04843 0.98569 0.94835 1.85110 1.01430 1.81378 1.26309 0.90252 0.89436 0.91369 0.82607 0.83789 0.86534 0.93736 0.95727 0.93888 0.93789 0.90790 0.90320 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.00 71.24 0.71 -1.52 16 2 C -0.07 -2.16 5.88 -19.83 -0.12 -2.28 16 3 C -0.14 -3.83 9.70 22.31 0.22 -3.61 16 4 C -0.08 -2.59 9.84 22.41 0.22 -2.37 16 5 C -0.12 -4.70 5.42 22.22 0.12 -4.58 16 6 C -0.03 -1.52 4.54 -19.73 -0.09 -1.61 16 7 C -0.15 -5.71 9.30 22.36 0.21 -5.50 16 8 C 0.07 3.49 2.30 -12.02 -0.03 3.46 16 9 H 0.01 0.41 7.91 -2.39 -0.02 0.39 16 10 C -0.48 -25.47 5.34 25.60 0.14 -25.33 16 11 H 0.08 4.21 5.28 -14.12 -0.07 4.13 16 12 C 0.02 1.06 3.78 84.66 0.32 1.38 16 13 N -0.93 -53.05 12.26 21.45 0.26 -52.79 16 14 Si 0.93 44.68 29.54 68.60 2.03 46.70 16 15 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 16 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 18 C -0.07 -3.44 4.82 30.03 0.14 -3.29 16 19 C -0.11 -4.71 4.96 29.50 0.15 -4.57 16 20 C -0.07 -2.48 6.18 71.49 0.44 -2.04 16 21 S -0.18 -7.34 17.90 -56.49 -1.01 -8.35 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 24 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 25 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 26 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 27 H 0.12 4.24 7.97 -2.91 -0.02 4.22 16 28 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.02 1.06 7.77 -2.39 -0.02 1.04 16 30 H 0.04 2.19 7.66 -2.39 -0.02 2.17 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 3.72 5.08 -2.38 -0.01 3.71 16 33 H 0.08 2.71 8.13 -2.38 -0.02 2.69 16 34 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 Total: -1.00 -60.94 277.90 4.73 -56.20 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.02 Total: 10.10 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 2.43 Total: -51.87 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.26 Total: -52.79 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -1.01 Total: -8.35 kcal Total: -60.94 4.73 -56.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.927 kcal (2) G-P(sol) polarization free energy of solvation -60.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds