Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46486 * 126.49658 * 2 1 4 4 C 1.39699 * 134.00864 * 359.97438 * 3 2 1 5 5 C 1.36602 * 119.80566 * 180.02562 * 4 3 2 6 6 C 1.38829 * 120.55033 * 359.95237 * 5 4 3 7 7 C 1.37942 * 120.63589 * 0.04779 * 6 5 4 8 8 F 1.35093 * 120.13379 * 179.97438 * 7 6 5 9 9 C 1.39313 * 119.73346 * 359.97438 * 7 6 5 10 10 N 1.37783 * 133.50422 * 180.31370 * 9 7 6 11 11 H 0.96997 * 125.07618 * 0.02562 * 10 9 7 12 12 C 1.34245 * 126.49456 * 180.02562 * 2 1 3 13 13 C 1.50696 * 125.03914 * 359.97438 * 12 2 1 14 14 H 1.09001 * 109.47545 * 325.00183 * 13 12 2 15 15 N 1.46900 * 109.47209 * 204.99881 * 13 12 2 16 16 C 1.50706 * 109.47259 * 84.99843 * 13 12 2 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08998 * 109.47420 * 269.97808 * 1 2 3 25 25 H 1.09000 * 109.46792 * 29.97750 * 1 2 3 26 26 H 1.09003 * 109.46871 * 149.97695 * 1 2 3 27 27 H 1.08000 * 120.09973 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.72333 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.68784 * 180.02562 * 6 5 4 30 30 H 1.00900 * 111.00100 * 299.99420 * 15 13 12 31 31 H 1.00898 * 111.00378 * 63.95632 * 15 13 12 32 32 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1776 0.0000 4 6 2.1478 2.5554 -0.0004 5 6 3.2049 3.4207 -0.0008 6 6 4.5082 2.9424 0.0002 7 6 4.7592 1.5861 0.0007 8 9 6.0315 1.1318 0.0012 9 6 3.6955 0.6865 0.0006 10 7 3.6166 -0.6891 0.0065 11 1 4.3771 -1.2910 0.0124 12 6 2.3054 -1.0792 -0.0005 13 6 1.8281 -2.5086 -0.0006 14 1 0.9147 -2.5867 0.5891 15 7 2.8638 -3.3707 0.5842 16 6 1.5509 -2.9456 -1.4160 17 1 1.7055 -2.2572 -2.2338 18 6 1.1001 -4.2241 -1.6670 19 7 0.9115 -5.0623 -0.6712 20 14 0.7560 -4.7655 -3.4214 21 1 0.2857 -6.1741 -3.4215 22 1 -0.2909 -3.8936 -4.0122 23 1 2.0002 -4.6595 -4.2252 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.1369 2.9355 -0.0013 28 1 3.0252 4.4856 -0.0016 29 1 5.3336 3.6390 0.0003 30 1 3.7210 -3.3160 0.0549 31 1 3.0218 -3.1396 1.5535 32 1 1.0899 -4.7810 0.2398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259747927.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = -2.676816 kcal Electronic energy + Delta-G solvation = -17676.317754 eV Core-core repulsion = 14743.916932 eV Total energy + Delta-G solvation = -2932.400822 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.70607 -40.95974 -37.02886 -34.59189 -32.48068 -31.34765 -29.48211 -28.80753 -26.52266 -25.40838 -22.97569 -22.12190 -20.71887 -18.86364 -17.77619 -17.00586 -16.67757 -15.64825 -15.56013 -14.96033 -14.93317 -14.43893 -13.90356 -13.70270 -13.21753 -12.83033 -12.51275 -12.27381 -12.06461 -11.79965 -11.69847 -11.37992 -11.23611 -10.89549 -10.74474 -10.51591 -10.10173 -9.15757 -8.86771 -8.45943 -7.89507 -7.80591 -7.12001 -6.30600 -4.16483 1.21809 1.71039 3.11050 3.38577 3.43597 3.44088 3.62760 3.97613 4.43343 4.51725 4.90510 5.03192 5.25287 5.29673 5.45544 5.54507 5.78894 5.91921 5.93903 6.11402 6.14177 6.26829 6.33452 6.50839 6.59258 6.71138 6.85728 7.03333 7.21810 7.43699 7.72243 7.87823 8.09706 8.46577 8.49598 8.90214 9.66433 11.08425 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.006509 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.314034 B = 4300.722709 C = 4602.511071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.196 4.196 3 C -0.069 4.069 4 C -0.084 4.084 5 C -0.130 4.130 6 C -0.150 4.150 7 C 0.085 3.915 8 F -0.149 7.149 9 C 0.053 3.947 10 N -0.584 5.584 11 H 0.411 0.589 12 C 0.114 3.886 13 C 0.261 3.739 14 H 0.059 0.941 15 N -0.832 5.832 16 C -0.611 4.611 17 H 0.049 0.951 18 C 0.042 3.958 19 N -0.885 5.885 20 Si 1.065 2.935 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.290 1.290 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.323 0.677 31 H 0.306 0.694 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 12.937 2.375 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.202 4.202 3 C -0.075 4.075 4 C -0.103 4.103 5 C -0.149 4.149 6 C -0.170 4.170 7 C 0.063 3.937 8 F -0.128 7.128 9 C -0.055 4.055 10 N -0.186 5.186 11 H 0.248 0.752 12 C 0.003 3.997 13 C 0.151 3.849 14 H 0.077 0.923 15 N -0.360 5.360 16 C -0.650 4.650 17 H 0.068 0.932 18 C -0.169 4.169 19 N -0.518 5.518 20 Si 0.893 3.107 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.217 1.217 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.639 10.888 1.334 11.282 hybrid contribution 1.966 1.965 0.964 2.942 sum 4.604 12.852 2.299 13.844 Atomic orbital electron populations 1.20017 0.89430 1.02490 1.00744 1.19938 0.95400 0.89222 1.15608 1.19116 0.91059 0.93454 1.03841 1.20274 0.99155 0.90857 0.99967 1.20327 0.91271 0.99442 1.03875 1.20635 0.98379 0.92004 1.05979 1.16711 0.76274 0.91463 1.09239 1.91436 1.36987 1.89803 1.94581 1.18168 0.94816 0.84146 1.08366 1.41688 1.08083 1.04029 1.64768 0.75170 1.22305 0.81218 0.99909 0.96265 1.18298 0.90970 0.77943 0.97683 0.92341 1.59353 1.12605 1.60068 1.03956 1.21614 1.52354 1.01081 0.89911 0.93240 1.25645 0.93148 0.92731 1.05380 1.70580 1.41739 1.37439 1.02061 0.83621 0.76451 0.76268 0.74335 1.20766 1.21421 1.21685 0.92987 0.92817 0.90416 0.85844 0.85618 0.85165 0.86421 0.88340 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.02 36.00 0.36 -0.85 16 2 C -0.20 -3.85 6.31 -102.71 -0.65 -4.50 16 3 C -0.07 -1.25 6.35 -105.15 -0.67 -1.92 16 4 C -0.08 -1.24 10.05 -39.63 -0.40 -1.64 16 5 C -0.13 -1.68 9.97 -39.95 -0.40 -2.07 16 6 C -0.15 -2.07 9.99 -39.47 -0.39 -2.47 16 7 C 0.08 1.40 7.32 -39.29 -0.29 1.11 16 8 F -0.15 -2.44 17.27 2.25 0.04 -2.40 16 9 C 0.05 0.98 7.26 -83.91 -0.61 0.37 16 10 N -0.58 -10.95 5.90 -6.91 -0.04 -10.99 16 11 H 0.41 7.03 8.00 -40.82 -0.33 6.70 16 12 C 0.11 2.37 5.97 -81.79 -0.49 1.88 16 13 C 0.26 6.02 2.16 -70.02 -0.15 5.87 16 14 H 0.06 1.45 7.79 -51.93 -0.40 1.05 16 15 N -0.83 -17.75 7.65 -6.65 -0.05 -17.81 16 16 C -0.61 -16.14 8.71 -34.44 -0.30 -16.44 16 17 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 18 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 19 N -0.88 -25.47 13.51 55.43 0.75 -24.72 16 20 Si 1.06 24.49 29.90 -169.99 -5.08 19.40 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.50 7.81 -51.93 -0.41 1.09 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 30 H 0.32 6.62 8.06 -39.29 -0.32 6.31 16 31 H 0.31 5.75 9.06 -39.29 -0.36 5.39 16 32 H 0.29 8.29 6.40 -40.82 -0.26 8.03 16 LS Contribution 280.38 15.07 4.23 4.23 Total: -1.00 -29.24 280.38 -7.63 -36.87 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -3.39 Total: 15.04 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -4.08 Total: -19.62 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.66 Total: -53.52 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.24 -7.63 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747927.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.195 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds