Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46486 * 126.49658 * 2 1 4 4 C 1.39699 * 134.00864 * 359.97438 * 3 2 1 5 5 C 1.36602 * 119.80566 * 180.02562 * 4 3 2 6 6 C 1.38829 * 120.55033 * 359.95237 * 5 4 3 7 7 C 1.37942 * 120.63589 * 0.04779 * 6 5 4 8 8 F 1.35093 * 120.13379 * 179.97438 * 7 6 5 9 9 C 1.39313 * 119.73346 * 359.97438 * 7 6 5 10 10 N 1.37783 * 133.50422 * 180.31370 * 9 7 6 11 11 H 0.96997 * 125.07618 * 0.02562 * 10 9 7 12 12 C 1.34245 * 126.49456 * 180.02562 * 2 1 3 13 13 C 1.50696 * 125.03914 * 359.97438 * 12 2 1 14 14 H 1.09001 * 109.47545 * 325.00183 * 13 12 2 15 15 N 1.46900 * 109.47209 * 204.99881 * 13 12 2 16 16 C 1.50706 * 109.47259 * 84.99843 * 13 12 2 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08998 * 109.47420 * 269.97808 * 1 2 3 25 25 H 1.09000 * 109.46792 * 29.97750 * 1 2 3 26 26 H 1.09003 * 109.46871 * 149.97695 * 1 2 3 27 27 H 1.08000 * 120.09973 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.72333 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.68784 * 180.02562 * 6 5 4 30 30 H 1.00900 * 111.00100 * 299.99420 * 15 13 12 31 31 H 1.00898 * 111.00378 * 63.95632 * 15 13 12 32 32 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1776 0.0000 4 6 2.1478 2.5554 -0.0004 5 6 3.2049 3.4207 -0.0008 6 6 4.5082 2.9424 0.0002 7 6 4.7592 1.5861 0.0007 8 9 6.0315 1.1318 0.0012 9 6 3.6955 0.6865 0.0006 10 7 3.6166 -0.6891 0.0065 11 1 4.3771 -1.2910 0.0124 12 6 2.3054 -1.0792 -0.0005 13 6 1.8281 -2.5086 -0.0006 14 1 0.9147 -2.5867 0.5891 15 7 2.8638 -3.3707 0.5842 16 6 1.5509 -2.9456 -1.4160 17 1 1.7055 -2.2572 -2.2338 18 6 1.1001 -4.2241 -1.6670 19 7 0.9115 -5.0623 -0.6712 20 14 0.7560 -4.7655 -3.4214 21 1 0.2857 -6.1741 -3.4215 22 1 -0.2909 -3.8936 -4.0122 23 1 2.0002 -4.6595 -4.2252 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.1369 2.9355 -0.0013 28 1 3.0252 4.4856 -0.0016 29 1 5.3336 3.6390 0.0003 30 1 3.7210 -3.3160 0.0549 31 1 3.0218 -3.1396 1.5535 32 1 1.0899 -4.7810 0.2398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747927.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = -21.256040 kcal Electronic energy + Delta-G solvation = -17677.123409 eV Core-core repulsion = 14743.916932 eV Total energy + Delta-G solvation = -2933.206478 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.93479 -42.32276 -38.34840 -36.33596 -33.87541 -33.28194 -30.71040 -30.13916 -28.17192 -27.06900 -24.66374 -23.36815 -22.19163 -20.31724 -19.19770 -18.85552 -17.96817 -16.94102 -16.80767 -16.64072 -16.40499 -15.70251 -15.52319 -15.31722 -14.75403 -14.31556 -14.03465 -13.63668 -13.59128 -13.43665 -13.06434 -12.66994 -12.55021 -12.49998 -12.42508 -12.06567 -11.91768 -10.91697 -10.53600 -10.32054 -9.59164 -9.20463 -8.56493 -8.36984 -6.30938 -0.01497 0.51754 1.54242 1.61124 1.65149 1.81171 2.01547 2.60753 2.77249 3.22243 3.26081 3.66940 3.89462 3.96883 4.02026 4.25832 4.36934 4.46285 4.63423 4.79601 4.90662 4.96395 4.98296 5.14366 5.21796 5.34004 5.56119 5.71173 5.80758 5.84405 6.08029 6.19475 6.43090 6.55089 6.68322 6.86994 7.58156 8.93240 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.006509 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.314034 B = 4300.722709 C = 4602.511071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.202 4.202 3 C -0.094 4.094 4 C -0.084 4.084 5 C -0.116 4.116 6 C -0.131 4.131 7 C 0.059 3.941 8 F -0.154 7.154 9 C 0.035 3.965 10 N -0.586 5.586 11 H 0.413 0.587 12 C 0.081 3.919 13 C 0.270 3.730 14 H 0.034 0.966 15 N -0.837 5.837 16 C -0.614 4.614 17 H 0.033 0.967 18 C -0.003 4.003 19 N -0.912 5.912 20 Si 1.107 2.893 21 H -0.284 1.284 22 H -0.273 1.273 23 H -0.281 1.281 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.328 0.672 31 H 0.321 0.679 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 15.929 1.980 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.209 4.209 3 C -0.099 4.099 4 C -0.102 4.102 5 C -0.135 4.135 6 C -0.150 4.150 7 C 0.037 3.963 8 F -0.133 7.133 9 C -0.073 4.073 10 N -0.188 5.188 11 H 0.250 0.750 12 C -0.030 4.030 13 C 0.160 3.840 14 H 0.051 0.949 15 N -0.365 5.365 16 C -0.653 4.653 17 H 0.051 0.949 18 C -0.208 4.208 19 N -0.547 5.547 20 Si 0.930 3.070 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.167 0.833 28 H 0.189 0.811 29 H 0.182 0.818 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.030 13.900 0.948 14.258 hybrid contribution 1.903 1.250 1.139 2.546 sum 4.933 15.150 2.087 16.069 Atomic orbital electron populations 1.20014 0.88467 1.02253 1.01576 1.20334 0.96349 0.89933 1.14291 1.19342 0.90416 0.94609 1.05574 1.20678 1.01289 0.89455 0.98781 1.20858 0.90063 1.01425 1.01184 1.21175 1.00112 0.91149 1.02611 1.17037 0.75802 0.92352 1.11079 1.91420 1.37048 1.90033 1.94792 1.18567 0.95947 0.83867 1.08901 1.41576 1.07358 1.04661 1.65245 0.74982 1.21844 0.82551 0.98883 0.99711 1.17824 0.90596 0.79967 0.95589 0.94882 1.59118 1.12448 1.60045 1.04923 1.21821 1.51582 1.00645 0.91233 0.94886 1.26854 0.92728 0.93185 1.08007 1.70685 1.43974 1.38035 1.02011 0.83060 0.77032 0.75976 0.70896 1.20901 1.19892 1.20680 0.91592 0.90344 0.93204 0.83322 0.81093 0.81817 0.85962 0.86715 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.02 71.23 0.71 -1.57 16 2 C -0.20 -7.99 6.31 -18.63 -0.12 -8.11 16 3 C -0.09 -3.28 6.35 -20.20 -0.13 -3.41 16 4 C -0.08 -2.17 10.05 22.24 0.22 -1.94 16 5 C -0.12 -2.41 9.97 22.03 0.22 -2.19 16 6 C -0.13 -3.06 9.99 22.34 0.22 -2.84 16 7 C 0.06 1.83 7.32 22.46 0.16 2.00 16 8 F -0.15 -4.86 17.27 44.97 0.78 -4.08 16 9 C 0.03 1.25 7.26 39.04 0.28 1.54 16 10 N -0.59 -22.44 5.90 -175.79 -1.04 -23.48 16 11 H 0.41 14.63 8.00 -92.71 -0.74 13.89 16 12 C 0.08 3.46 5.97 40.87 0.24 3.70 16 13 C 0.27 13.03 2.16 43.42 0.09 13.12 16 14 H 0.03 1.75 7.79 -2.39 -0.02 1.73 16 15 N -0.84 -37.03 7.65 -174.95 -1.34 -38.37 16 16 C -0.61 -33.49 8.71 25.60 0.22 -33.27 16 17 H 0.03 1.87 7.74 -2.91 -0.02 1.84 16 18 C 0.00 -0.16 5.39 84.65 0.46 0.29 16 19 N -0.91 -53.90 13.51 21.45 0.29 -53.61 16 20 Si 1.11 49.92 29.90 68.60 2.05 51.97 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 1.98 7.81 -2.39 -0.02 1.96 16 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.33 13.90 8.06 -89.69 -0.72 13.18 16 31 H 0.32 12.50 9.06 -89.70 -0.81 11.68 16 32 H 0.28 16.60 6.40 -92.71 -0.59 16.01 16 Total: -1.00 -64.68 280.38 2.42 -62.26 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.92 Total: 37.98 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 2.60 Total: -32.67 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -2.09 Total: -115.46 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.78 Total: -4.08 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -64.68 2.42 -62.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747927.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.004 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds