Wall clock time and date at job start Mon Mar 30 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.35196 * 126.49638 * 239.71139 * 4 2 1 6 6 C 1.47091 * 103.27404 * 179.97438 * 5 4 2 7 7 C 1.47225 * 127.41268 * 180.12006 * 6 5 4 8 8 O 1.34451 * 127.25383 * 0.24822 * 7 6 5 9 9 N 1.20514 * 113.20480 * 179.97438 * 8 7 6 10 10 C 1.29743 * 113.40503 * 359.97438 * 9 8 7 11 11 C 1.41225 * 127.25300 * 179.97438 * 7 6 5 12 12 C 1.40667 * 128.82135 * 0.02562 * 11 7 6 13 13 H 1.08006 * 120.00027 * 0.02562 * 12 11 7 14 14 C 1.40073 * 119.99933 * 179.97438 * 12 11 7 15 15 N 1.30802 * 120.00166 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47203 * 90.00297 * 16 14 12 18 18 H 1.48498 * 109.47568 * 210.00901 * 16 14 12 19 19 H 1.48510 * 109.47119 * 330.00849 * 16 14 12 20 20 N 1.31664 * 105.17555 * 0.32347 * 6 5 4 21 21 O 1.20762 * 111.46955 * 359.79229 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.08004 * 128.36133 * 0.03471 * 5 4 2 30 30 H 1.08001 * 127.23069 * 180.02562 * 10 9 8 31 31 H 0.97003 * 120.00404 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.8172 -1.8108 -1.2597 6 6 2.9915 -2.0633 -2.6983 7 6 3.7603 -3.1488 -3.3292 8 8 4.4493 -4.1239 -2.7110 9 7 4.9872 -4.8837 -3.4763 10 6 4.7808 -4.5913 -4.7234 11 6 3.9250 -3.3884 -4.7112 12 6 3.4065 -2.6639 -5.7997 13 1 2.7903 -1.7942 -5.6252 14 6 3.6901 -3.0697 -7.1100 15 7 4.4368 -4.1227 -7.3214 16 14 3.0022 -2.1072 -8.5555 17 1 3.9616 -1.0419 -8.9425 18 1 2.7901 -3.0237 -9.7046 19 1 1.7076 -1.4908 -8.1687 20 7 2.3158 -1.1070 -3.3004 21 8 1.7912 -0.3671 -2.5031 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 3.2185 -2.3701 -0.4275 30 1 5.1539 -5.1188 -5.5887 31 1 4.6330 -4.4040 -8.2288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259782117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:55 Heat of formation + Delta-G solvation = 73.283257 kcal Electronic energy + Delta-G solvation = -17458.915846 eV Core-core repulsion = 14517.436110 eV Total energy + Delta-G solvation = -2941.479736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.40202 -44.67781 -36.86622 -36.45488 -34.87498 -33.44547 -31.82468 -31.20914 -28.36768 -27.96286 -24.94444 -23.98171 -23.05912 -22.46623 -20.63865 -19.30334 -18.37471 -17.97236 -17.75681 -17.26264 -16.78626 -16.12042 -15.66225 -15.04016 -14.52623 -14.23787 -14.03503 -13.81624 -13.17990 -13.14917 -12.96350 -12.94522 -12.44128 -12.16519 -12.11065 -11.97365 -11.88214 -11.73732 -11.55380 -11.29459 -10.55887 -10.23599 -9.58630 -8.96596 -6.61219 0.28503 0.87334 1.32387 1.32886 1.48735 1.73998 2.03047 2.10813 2.35809 2.54076 3.08533 3.48166 3.97848 4.00276 4.09757 4.22745 4.23968 4.40839 4.52742 4.75750 4.84800 4.87634 5.02092 5.02636 5.06698 5.09719 5.27712 5.38857 5.42873 5.45759 5.54800 6.16696 6.37649 6.56463 7.70118 7.95242 8.05158 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.024530 B = 0.006628 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.192946 B = 4223.626356 C = 5179.059569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.006 4.006 3 C -0.147 4.147 4 C -0.019 4.019 5 C -0.248 4.248 6 C 0.125 3.875 7 C -0.244 4.244 8 O 0.071 5.929 9 N -0.379 5.379 10 C -0.049 4.049 11 C 0.018 3.982 12 C -0.418 4.418 13 H 0.091 0.909 14 C 0.032 3.968 15 N -0.806 5.806 16 Si 1.001 2.999 17 H -0.256 1.256 18 H -0.252 1.252 19 H -0.262 1.262 20 N -0.399 5.399 21 O 0.079 5.921 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.122 0.878 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.187 0.813 30 H 0.202 0.798 31 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 8.488 8.635 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 C -0.204 4.204 4 C -0.081 4.081 5 C -0.270 4.270 6 C -0.030 4.030 7 C -0.304 4.304 8 O 0.000 6.000 9 N -0.082 5.082 10 C -0.231 4.231 11 C 0.011 3.989 12 C -0.447 4.447 13 H 0.109 0.891 14 C -0.186 4.186 15 N -0.431 5.431 16 Si 0.820 3.180 17 H -0.180 1.180 18 H -0.176 1.176 19 H -0.186 1.186 20 N -0.111 5.111 21 O 0.018 5.982 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.140 0.860 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.204 0.796 30 H 0.219 0.781 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.469 7.742 7.840 12.301 hybrid contribution 0.106 -0.146 -0.743 0.764 sum -5.363 7.596 7.098 11.698 Atomic orbital electron populations 1.21881 0.92378 1.02512 1.03637 1.20006 0.97282 0.96338 0.88943 1.21881 1.01219 0.93667 1.03640 1.24940 0.98580 0.96490 0.88103 1.23650 1.06944 1.01488 0.94892 1.21345 0.97295 0.93206 0.91145 1.20264 1.18496 1.01575 0.90094 1.84129 1.52038 1.31047 1.32787 1.72849 1.16221 1.14587 1.04551 1.26701 1.03297 0.99343 0.93781 1.20449 0.93613 0.93062 0.91789 1.19381 1.25209 1.10215 0.89876 0.89114 1.27092 0.92996 0.95379 1.03167 1.69516 1.26716 1.20824 1.26087 0.84902 0.79472 0.78529 0.75132 1.18003 1.17573 1.18595 1.74303 1.15790 1.06144 1.14877 1.84553 1.56392 1.43835 1.13418 0.88608 0.92874 0.92778 0.86030 0.88610 0.92868 0.92775 0.79612 0.78109 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.18 71.98 0.66 -1.84 16 2 C -0.01 -0.13 3.34 -11.54 -0.04 -0.17 16 3 C -0.15 -2.50 9.17 71.98 0.66 -1.84 16 4 C -0.02 -0.61 5.96 24.99 0.15 -0.46 16 5 C -0.25 -9.31 11.31 23.89 0.27 -9.04 16 6 C 0.12 6.12 7.38 43.86 0.32 6.45 16 7 C -0.24 -13.47 7.57 25.37 0.19 -13.28 16 8 O 0.07 3.82 11.09 68.18 0.76 4.57 16 9 N -0.38 -20.42 11.92 -52.70 -0.63 -21.05 16 10 C -0.05 -2.71 11.24 87.48 0.98 -1.73 16 11 C 0.02 1.04 6.26 -19.47 -0.12 0.92 16 12 C -0.42 -23.28 9.21 23.31 0.21 -23.06 16 13 H 0.09 5.12 6.73 -2.91 -0.02 5.10 16 14 C 0.03 1.57 5.50 85.29 0.47 2.04 16 15 N -0.81 -39.52 10.64 21.85 0.23 -39.29 16 16 Si 1.00 37.44 29.56 68.60 2.03 39.47 16 17 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 18 H -0.25 -8.53 7.11 99.48 0.71 -7.83 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 N -0.40 -19.25 10.87 -45.96 -0.50 -19.75 16 21 O 0.08 3.14 11.09 72.29 0.80 3.95 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.12 1.86 8.12 -2.39 -0.02 1.85 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.19 5.87 8.06 -2.91 -0.02 5.84 16 30 H 0.20 10.76 6.29 -2.91 -0.02 10.75 16 31 H 0.30 12.99 8.30 -92.71 -0.77 12.23 16 Total: -1.00 -65.55 278.96 7.61 -57.94 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.15 Total: 16.18 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 3.76 Total: -42.02 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -0.90 Total: -80.09 kcal Atomic # 8 Polarization: 6.96 SS G_CDS: 1.56 Total: 8.52 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -65.55 7.61 -57.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.222 kcal (2) G-P(sol) polarization free energy of solvation -65.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds