Wall clock time and date at job start Mon Mar 30 2020 06:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39867 * 125.46588 * 2 1 4 4 C 1.30226 * 110.08971 * 180.02562 * 3 2 1 5 5 C 1.45965 * 107.79381 * 359.97438 * 4 3 2 6 6 C 1.39941 * 133.92158 * 179.97438 * 5 4 3 7 7 C 1.36404 * 119.81284 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.69406 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47445 * 99.99571 * 8 7 6 10 10 C 1.50693 * 109.47429 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99734 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00325 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00137 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99896 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47717 * 89.99717 * 14 12 10 16 16 H 1.48502 * 109.47424 * 210.00030 * 14 12 10 17 17 H 1.48507 * 109.47028 * 329.99760 * 14 12 10 18 18 C 1.39195 * 120.61175 * 359.97438 * 7 6 5 19 19 F 1.35099 * 119.69447 * 180.02562 * 18 7 6 20 20 C 1.37791 * 120.61187 * 0.26917 * 18 7 6 21 21 C 1.37055 * 125.46060 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47211 * 270.00174 * 1 2 3 23 23 H 1.08999 * 109.46715 * 30.00121 * 1 2 3 24 24 H 1.08996 * 109.47185 * 149.99860 * 1 2 3 25 25 H 1.08001 * 126.10599 * 180.02562 * 4 3 2 26 26 H 1.07994 * 120.09242 * 0.02562 * 6 5 4 27 27 H 1.08997 * 109.46993 * 220.00113 * 8 7 6 28 28 H 1.09004 * 109.46691 * 339.99469 * 8 7 6 29 29 H 1.09002 * 109.47175 * 300.00630 * 9 8 7 30 30 H 1.09006 * 109.47030 * 59.99750 * 9 8 7 31 31 H 0.97002 * 120.00031 * 179.97438 * 13 12 10 32 32 H 1.07996 * 120.14407 * 179.68048 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2766 1.1392 0.0000 4 6 3.5322 0.7939 -0.0005 5 6 3.5938 -0.6645 -0.0003 6 6 4.6418 -1.5918 -0.0011 7 6 4.3654 -2.9276 -0.0011 8 6 5.4961 -3.9239 -0.0014 9 6 5.7136 -4.4490 1.4190 10 6 6.8446 -5.4448 1.4189 11 1 7.3568 -5.6800 0.4976 12 6 7.2248 -6.0565 2.5946 13 7 8.2116 -6.9259 2.5943 14 14 6.3374 -5.6514 4.1876 15 1 5.1916 -6.5790 4.3658 16 1 7.2762 -5.7994 5.3287 17 1 5.8390 -4.2534 4.1349 18 6 3.0487 -3.3789 0.0002 19 9 2.7961 -4.7061 0.0006 20 6 2.0004 -2.4847 -0.0041 21 6 2.2602 -1.1163 -0.0005 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8899 -0.5138 25 1 4.3772 1.4664 -0.0003 26 1 5.6665 -1.2509 -0.0017 27 1 5.2481 -4.7547 -0.6620 28 1 6.4071 -3.4395 -0.3532 29 1 5.9615 -3.6182 2.0796 30 1 4.8026 -4.9334 1.7708 31 1 8.4793 -7.3560 3.4215 32 1 0.9817 -2.8432 -0.0082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259791107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:42 Heat of formation + Delta-G solvation = 33.288865 kcal Electronic energy + Delta-G solvation = -17208.186410 eV Core-core repulsion = 14277.345177 eV Total energy + Delta-G solvation = -2930.841233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.66070 -41.22726 -37.39079 -33.85909 -33.51234 -31.92784 -29.88386 -29.02156 -26.83236 -24.93902 -23.02994 -21.70461 -20.87027 -20.13766 -17.69974 -17.03624 -16.72452 -15.85905 -15.74536 -15.13457 -14.95312 -14.44451 -14.18050 -13.72913 -13.16776 -13.07113 -13.00051 -12.69010 -12.57759 -12.27219 -11.75342 -11.36625 -11.01247 -10.96494 -10.77583 -10.26555 -9.97117 -9.79700 -9.67285 -9.17978 -8.51660 -8.36421 -7.78263 -6.02683 -4.00647 0.84503 1.49061 2.25949 2.40250 3.33414 3.40388 3.45113 3.70651 4.26252 4.37577 4.47639 4.63004 4.67534 4.97670 5.06394 5.13045 5.20735 5.29365 5.31939 5.57608 5.73791 5.91650 6.12503 6.16573 6.42910 6.43825 6.66142 6.71183 6.86910 7.03396 7.29154 7.42669 7.52301 7.79951 8.54466 9.01937 9.60073 11.10693 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.005417 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.199956 B = 5167.326197 C = 5291.495557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.414 5.414 3 N -0.260 5.260 4 C 0.080 3.920 5 C -0.190 4.190 6 C -0.015 4.015 7 C -0.134 4.134 8 C -0.065 4.065 9 C -0.007 4.007 10 C -0.520 4.520 11 H 0.073 0.927 12 C 0.068 3.932 13 N -0.903 5.903 14 Si 0.876 3.124 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.265 1.265 18 C 0.161 3.839 19 F -0.125 7.125 20 C -0.190 4.190 21 C 0.141 3.859 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.198 0.802 26 H 0.140 0.860 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 14.174 -5.812 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.203 5.203 3 N -0.072 5.072 4 C -0.117 4.117 5 C -0.198 4.198 6 C -0.035 4.035 7 C -0.136 4.136 8 C -0.102 4.102 9 C -0.045 4.045 10 C -0.557 4.557 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.704 3.296 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C 0.139 3.861 19 F -0.104 7.104 20 C -0.213 4.213 21 C 0.027 3.973 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.215 0.785 26 H 0.158 0.842 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.818 15.002 -5.694 21.842 hybrid contribution -0.093 -0.829 0.992 1.296 sum -14.911 14.173 -4.702 21.103 Atomic orbital electron populations 1.21708 0.74327 1.04021 1.02896 1.48054 1.05666 1.00922 1.65637 1.76543 1.02732 1.08786 1.19121 1.25064 0.94605 0.93044 0.98988 1.19923 0.92856 0.93466 1.13510 1.20140 0.98320 0.90356 0.94723 1.19960 0.94034 0.95753 1.03857 1.20549 0.93397 0.95416 1.00846 1.19562 0.97109 0.96354 0.91454 1.21114 1.15776 1.22633 0.96226 0.90854 1.24989 0.94752 0.94597 0.98940 1.69911 1.28425 1.28310 1.27605 0.86826 0.79763 0.79601 0.83443 1.20260 1.21354 1.18968 1.17264 0.92793 0.77391 0.98654 1.91534 1.94860 1.30840 1.93122 1.19681 0.99197 0.89225 1.13199 1.18251 0.90781 0.88652 0.99593 0.91388 0.89594 0.89899 0.78533 0.84245 0.91282 0.91020 0.96420 0.96912 0.92741 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.93 11.40 59.85 0.68 1.61 16 2 N -0.41 -5.29 4.05 -65.47 -0.27 -5.56 16 3 N -0.26 -3.44 12.40 31.87 0.40 -3.04 16 4 C 0.08 0.96 12.28 -15.14 -0.19 0.78 16 5 C -0.19 -2.69 6.36 -105.19 -0.67 -3.36 16 6 C -0.01 -0.22 9.65 -39.61 -0.38 -0.60 16 7 C -0.13 -2.29 5.11 -104.93 -0.54 -2.82 16 8 C -0.06 -1.28 4.98 -27.88 -0.14 -1.42 16 9 C -0.01 -0.18 4.02 -27.89 -0.11 -0.29 16 10 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 14 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 18 C 0.16 2.68 7.22 -39.39 -0.28 2.40 16 19 F -0.13 -2.25 16.62 2.25 0.04 -2.21 16 20 C -0.19 -2.71 9.98 -39.36 -0.39 -3.10 16 21 C 0.14 2.02 6.87 -84.17 -0.58 1.44 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 25 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.14 1.75 8.01 -52.49 -0.42 1.33 16 27 H 0.07 1.38 7.92 -51.93 -0.41 0.97 16 28 H 0.07 1.32 7.97 -51.93 -0.41 0.91 16 29 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 30 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -33.19 283.74 -6.19 -39.38 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -3.71 Total: -4.42 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -3.03 Total: -18.62 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.90 Total: -35.82 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.19 -6.19 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.670 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds