Wall clock time and date at job start Mon Mar 30 2020 06:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39867 * 125.46588 * 2 1 4 4 C 1.30226 * 110.08971 * 180.02562 * 3 2 1 5 5 C 1.45965 * 107.79381 * 359.97438 * 4 3 2 6 6 C 1.39941 * 133.92158 * 179.97438 * 5 4 3 7 7 C 1.36404 * 119.81284 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.69406 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47445 * 99.99571 * 8 7 6 10 10 C 1.50693 * 109.47429 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99734 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00325 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00137 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99896 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47717 * 89.99717 * 14 12 10 16 16 H 1.48502 * 109.47424 * 210.00030 * 14 12 10 17 17 H 1.48507 * 109.47028 * 329.99760 * 14 12 10 18 18 C 1.39195 * 120.61175 * 359.97438 * 7 6 5 19 19 F 1.35099 * 119.69447 * 180.02562 * 18 7 6 20 20 C 1.37791 * 120.61187 * 0.26917 * 18 7 6 21 21 C 1.37055 * 125.46060 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47211 * 270.00174 * 1 2 3 23 23 H 1.08999 * 109.46715 * 30.00121 * 1 2 3 24 24 H 1.08996 * 109.47185 * 149.99860 * 1 2 3 25 25 H 1.08001 * 126.10599 * 180.02562 * 4 3 2 26 26 H 1.07994 * 120.09242 * 0.02562 * 6 5 4 27 27 H 1.08997 * 109.46993 * 220.00113 * 8 7 6 28 28 H 1.09004 * 109.46691 * 339.99469 * 8 7 6 29 29 H 1.09002 * 109.47175 * 300.00630 * 9 8 7 30 30 H 1.09006 * 109.47030 * 59.99750 * 9 8 7 31 31 H 0.97002 * 120.00031 * 179.97438 * 13 12 10 32 32 H 1.07996 * 120.14407 * 179.68048 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2766 1.1392 0.0000 4 6 3.5322 0.7939 -0.0005 5 6 3.5938 -0.6645 -0.0003 6 6 4.6418 -1.5918 -0.0011 7 6 4.3654 -2.9276 -0.0011 8 6 5.4961 -3.9239 -0.0014 9 6 5.7136 -4.4490 1.4190 10 6 6.8446 -5.4448 1.4189 11 1 7.3568 -5.6800 0.4976 12 6 7.2248 -6.0565 2.5946 13 7 8.2116 -6.9259 2.5943 14 14 6.3374 -5.6514 4.1876 15 1 5.1916 -6.5790 4.3658 16 1 7.2762 -5.7994 5.3287 17 1 5.8390 -4.2534 4.1349 18 6 3.0487 -3.3789 0.0002 19 9 2.7961 -4.7061 0.0006 20 6 2.0004 -2.4847 -0.0041 21 6 2.2602 -1.1163 -0.0005 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8899 -0.5138 25 1 4.3772 1.4664 -0.0003 26 1 5.6665 -1.2509 -0.0017 27 1 5.2481 -4.7547 -0.6620 28 1 6.4071 -3.4395 -0.3532 29 1 5.9615 -3.6182 2.0796 30 1 4.8026 -4.9334 1.7708 31 1 8.4793 -7.3560 3.4215 32 1 0.9817 -2.8432 -0.0082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:42 Heat of formation + Delta-G solvation = 13.167721 kcal Electronic energy + Delta-G solvation = -17209.058928 eV Core-core repulsion = 14277.345177 eV Total energy + Delta-G solvation = -2931.713751 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94837 -42.23836 -38.58159 -35.64847 -34.48074 -33.74356 -31.12610 -30.37968 -27.90475 -26.44836 -24.18286 -23.26197 -21.87801 -21.61926 -19.00856 -18.76225 -18.03534 -17.05300 -16.86416 -16.33601 -16.16887 -16.10836 -15.40536 -14.89395 -14.79813 -14.54994 -14.27578 -13.89289 -13.70053 -13.41816 -13.32963 -12.91147 -12.66316 -12.23770 -11.95949 -11.80798 -11.70420 -11.59982 -11.30456 -10.97143 -10.75777 -9.50699 -8.86753 -8.28749 -6.32088 -0.24234 0.32964 1.35270 1.35733 1.38717 1.43749 1.48207 2.36026 2.56943 3.06788 3.21045 3.42725 3.60404 3.71121 3.87266 4.18990 4.34721 4.42324 4.46333 4.61695 4.65778 4.68335 4.73207 4.92848 4.97061 5.06343 5.29163 5.40915 5.47405 5.62379 5.65352 5.77502 5.98904 6.28901 6.56509 6.75346 7.32464 8.87957 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.005417 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.199956 B = 5167.326197 C = 5291.495557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.415 5.415 3 N -0.276 5.276 4 C 0.090 3.910 5 C -0.203 4.203 6 C -0.004 4.004 7 C -0.158 4.158 8 C -0.054 4.054 9 C -0.002 4.002 10 C -0.530 4.530 11 H 0.038 0.962 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.943 3.057 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.249 1.249 18 C 0.137 3.863 19 F -0.141 7.141 20 C -0.179 4.179 21 C 0.133 3.867 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.236 0.764 26 H 0.160 0.840 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.022 0.978 30 H 0.007 0.993 31 H 0.266 0.734 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 16.624 -5.186 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.204 5.204 3 N -0.088 5.088 4 C -0.107 4.107 5 C -0.211 4.211 6 C -0.024 4.024 7 C -0.160 4.160 8 C -0.092 4.092 9 C -0.039 4.039 10 C -0.568 4.568 11 H 0.056 0.944 12 C -0.188 4.188 13 N -0.590 5.590 14 Si 0.767 3.233 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.172 1.172 18 C 0.115 3.885 19 F -0.119 7.119 20 C -0.202 4.202 21 C 0.017 3.983 22 H 0.097 0.903 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.252 0.748 26 H 0.178 0.822 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.615 17.478 -5.083 24.645 hybrid contribution 0.430 -1.512 0.703 1.722 sum -16.185 15.966 -4.380 23.153 Atomic orbital electron populations 1.22074 0.72073 1.05653 1.04162 1.48454 1.07027 1.00205 1.64719 1.76552 1.03340 1.09215 1.19662 1.25682 0.95283 0.92387 0.97309 1.20197 0.92695 0.94655 1.13507 1.20295 0.99647 0.89453 0.93016 1.19702 0.93211 0.96034 1.07091 1.20276 0.95178 0.95915 0.97799 1.19455 0.94779 0.95187 0.94474 1.21474 1.16721 1.23568 0.95000 0.94381 1.25916 0.95552 0.94432 1.02919 1.70055 1.30305 1.29814 1.28847 0.85763 0.78619 0.80218 0.78733 1.19624 1.20529 1.17234 1.17474 0.93427 0.77155 1.00409 1.91489 1.94952 1.31981 1.93518 1.19799 0.99700 0.88975 1.11681 1.18450 0.91529 0.89058 0.99247 0.90265 0.88187 0.88183 0.74840 0.82243 0.92691 0.90286 0.95932 0.97491 0.92468 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 11.40 127.77 1.46 2.81 16 2 N -0.42 -9.38 4.05 -361.05 -1.46 -10.84 16 3 N -0.28 -6.42 12.40 -53.07 -0.66 -7.08 16 4 C 0.09 1.85 12.28 86.93 1.07 2.92 16 5 C -0.20 -5.19 6.36 -20.23 -0.13 -5.32 16 6 C 0.00 -0.11 9.65 22.25 0.21 0.11 16 7 C -0.16 -5.27 5.11 -20.06 -0.10 -5.38 16 8 C -0.05 -2.16 4.98 29.85 0.15 -2.01 16 9 C 0.00 -0.07 4.02 29.84 0.12 0.05 16 10 C -0.53 -31.02 9.66 25.60 0.25 -30.78 16 11 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 12 C 0.01 0.52 5.47 84.65 0.46 0.98 16 13 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 14 Si 0.94 45.41 27.47 68.60 1.88 47.29 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 18 C 0.14 4.46 7.22 22.39 0.16 4.63 16 19 F -0.14 -5.08 16.62 44.97 0.75 -4.33 16 20 C -0.18 -4.74 9.98 22.41 0.22 -4.52 16 21 C 0.13 3.45 6.87 39.21 0.27 3.72 16 22 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 0.99 8.13 -2.39 -0.02 0.98 16 25 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16 26 H 0.16 3.59 8.01 -2.91 -0.02 3.56 16 27 H 0.05 2.28 7.92 -2.39 -0.02 2.26 16 28 H 0.08 2.94 7.97 -2.38 -0.02 2.92 16 29 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 30 H 0.01 0.33 7.57 -2.38 -0.02 0.31 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -72.35 283.74 6.02 -66.32 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.07 Total: 1.32 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 4.14 Total: -32.79 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.82 Total: -77.82 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.75 Total: -4.33 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -72.35 6.02 -66.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.492 kcal (2) G-P(sol) polarization free energy of solvation -72.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds