Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33487 * 125.69487 * 2 1 4 4 C 1.32559 * 109.15536 * 180.26486 * 3 2 1 5 5 C 1.41130 * 132.32891 * 179.77432 * 4 3 2 6 6 F 1.35096 * 120.35273 * 0.02562 * 5 4 3 7 7 C 1.36193 * 119.29010 * 179.97438 * 5 4 3 8 8 C 1.40484 * 119.67486 * 359.97438 * 7 5 4 9 9 C 1.34918 * 120.32058 * 359.97438 * 8 7 5 10 10 N 1.36576 * 120.65288 * 0.02562 * 9 8 7 11 11 C 1.35135 * 125.69346 * 179.83555 * 2 1 3 12 12 C 1.50702 * 126.41115 * 0.02562 * 11 2 1 13 13 H 1.09005 * 109.46761 * 3.08948 * 12 11 2 14 14 C 1.53000 * 109.46950 * 243.09364 * 12 11 2 15 15 C 1.50693 * 109.47004 * 123.08989 * 12 11 2 16 16 H 1.07998 * 120.00602 * 5.12014 * 15 12 11 17 17 C 1.37890 * 119.99877 * 185.11853 * 15 12 11 18 18 N 1.31506 * 120.00093 * 186.81920 * 17 15 12 19 19 Si 1.86800 * 119.99633 * 6.82366 * 17 15 12 20 20 H 1.48498 * 109.46780 * 269.99674 * 19 17 15 21 21 H 1.48503 * 109.46960 * 149.99999 * 19 17 15 22 22 H 1.48499 * 109.47338 * 29.99939 * 19 17 15 23 23 H 1.09001 * 109.47225 * 273.75390 * 1 2 3 24 24 H 1.08998 * 109.46695 * 33.75406 * 1 2 3 25 25 H 1.09003 * 109.46776 * 153.75480 * 1 2 3 26 26 H 1.07998 * 120.16423 * 179.97438 * 7 5 4 27 27 H 1.08005 * 119.83817 * 180.02562 * 8 7 5 28 28 H 1.08003 * 119.67409 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.47362 * 303.59067 * 14 12 11 30 30 H 1.08994 * 109.47380 * 63.59435 * 14 12 11 31 31 H 1.09007 * 109.46796 * 183.59551 * 14 12 11 32 32 H 0.97002 * 120.00121 * 354.91286 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0841 0.0000 4 6 3.5566 0.7067 -0.0058 5 6 4.7646 1.4364 -0.0125 6 9 4.7463 2.7872 -0.0133 7 6 5.9491 0.7641 -0.0170 8 6 5.9515 -0.6407 -0.0144 9 6 4.7880 -1.3238 -0.0070 10 7 3.5927 -0.6631 -0.0023 11 6 2.2955 -1.0975 0.0031 12 6 1.8324 -2.5316 0.0067 13 1 0.7442 -2.5621 -0.0490 14 6 2.2964 -3.2141 1.2950 15 6 2.4166 -3.2510 -1.1815 16 1 3.1238 -2.7473 -1.8238 17 6 2.0483 -4.5527 -1.4489 18 7 2.6550 -5.2251 -2.4023 19 14 0.6874 -5.3607 -0.4567 20 1 1.2729 -6.0325 0.7311 21 1 -0.0103 -6.3648 -1.2995 22 1 -0.2823 -4.3272 -0.0130 23 1 -0.3634 0.0673 1.0255 24 1 -0.3632 0.8544 -0.5710 25 1 -0.3633 -0.9218 -0.4545 26 1 6.8819 1.3083 -0.0225 27 1 6.8892 -1.1765 -0.0175 28 1 4.8020 -2.4037 -0.0046 29 1 3.3794 -3.1276 1.3823 30 1 1.8234 -2.7337 2.1514 31 1 2.0170 -4.2674 1.2691 32 1 3.3095 -4.7837 -2.9661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259800610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = 29.047726 kcal Electronic energy + Delta-G solvation = -18031.964828 eV Core-core repulsion = 15100.939685 eV Total energy + Delta-G solvation = -2931.025143 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.75040 -42.42079 -37.17237 -34.94484 -32.75267 -31.84004 -30.48595 -28.49729 -26.87195 -24.94135 -23.10035 -22.59790 -20.74610 -19.76553 -17.75867 -17.25403 -17.14458 -16.05966 -15.97708 -15.06660 -14.80988 -14.46886 -13.86473 -13.50522 -12.97501 -12.84553 -12.59037 -12.32684 -12.23580 -12.08314 -11.61621 -11.50519 -11.26493 -11.10976 -10.69032 -10.26408 -10.08043 -9.94829 -9.57547 -8.96251 -8.59718 -8.21441 -7.26744 -6.58619 -4.31095 0.92730 1.58409 2.94142 3.24367 3.29688 3.32161 3.46551 3.67633 4.14343 4.31954 4.51287 4.88016 5.07332 5.12545 5.18855 5.60156 5.62833 5.77231 5.98433 6.03414 6.04030 6.10799 6.21302 6.26568 6.33218 6.40408 6.51364 6.74768 6.89075 7.08678 7.18225 7.48046 7.78565 8.16252 8.25098 8.66217 9.40081 10.77213 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.008023 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.923129 B = 3488.982147 C = 4096.208995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.023 3.977 3 N -0.474 5.474 4 C 0.163 3.837 5 C 0.133 3.867 6 F -0.122 7.122 7 C -0.144 4.144 8 C -0.154 4.154 9 C 0.086 3.914 10 N -0.343 5.343 11 C 0.032 3.968 12 C 0.073 3.927 13 H 0.059 0.941 14 C -0.147 4.147 15 C -0.598 4.598 16 H 0.056 0.944 17 C 0.033 3.967 18 N -0.904 5.904 19 Si 1.053 2.947 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.154 0.846 28 H 0.175 0.825 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 6.965 6.534 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 N -0.195 5.195 4 C -0.081 4.081 5 C 0.111 3.889 6 F -0.101 7.101 7 C -0.169 4.169 8 C -0.175 4.175 9 C -0.036 4.036 10 N -0.015 5.015 11 C -0.082 4.082 12 C 0.053 3.947 13 H 0.077 0.923 14 C -0.205 4.205 15 C -0.636 4.636 16 H 0.074 0.926 17 C -0.172 4.172 18 N -0.537 5.537 19 Si 0.882 3.118 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.171 0.829 28 H 0.192 0.808 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.938 6.353 6.741 9.464 hybrid contribution 1.374 0.920 -0.399 1.701 sum 3.311 7.273 6.342 10.202 Atomic orbital electron populations 1.20089 0.87043 1.03065 1.02103 1.20676 0.96709 0.87366 1.06039 1.70494 0.97812 1.29894 1.21317 1.20317 0.93827 0.81690 1.12256 1.16066 0.90235 0.76875 1.05734 1.91495 1.97072 1.27700 1.93804 1.20884 0.96559 0.94859 1.04558 1.20455 0.97599 0.93032 1.06402 1.21980 0.82601 1.00098 0.98912 1.42342 1.06428 1.06904 1.45831 1.21776 0.79807 0.98986 1.07614 1.18017 0.97559 0.83721 0.95384 0.92343 1.22173 1.00496 1.00466 0.97379 1.21942 1.29701 1.00229 1.11686 0.92586 1.25801 0.99342 0.94151 0.97929 1.70822 1.25653 1.37966 1.19294 0.83869 0.76256 0.76191 0.75483 1.20886 1.21406 1.20136 0.91425 0.91296 0.90351 0.83632 0.82887 0.80777 0.93751 0.94897 0.92669 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.15 36.01 0.37 -0.72 16 2 C 0.02 0.47 7.06 -82.98 -0.59 -0.11 16 3 N -0.47 -10.26 11.32 -8.96 -0.10 -10.36 16 4 C 0.16 3.33 7.80 -156.01 -1.22 2.11 16 5 C 0.13 2.31 7.34 -39.22 -0.29 2.02 16 6 F -0.12 -2.10 17.28 2.25 0.04 -2.06 16 7 C -0.14 -2.01 10.04 -39.47 -0.40 -2.41 16 8 C -0.15 -2.13 9.98 -39.91 -0.40 -2.53 16 9 C 0.09 1.50 9.63 -16.62 -0.16 1.34 16 10 N -0.34 -6.98 2.95 -58.40 -0.17 -7.15 16 11 C 0.03 0.70 5.53 -81.48 -0.45 0.25 16 12 C 0.07 1.62 2.13 -92.93 -0.20 1.42 16 13 H 0.06 1.28 5.16 -51.93 -0.27 1.02 16 14 C -0.15 -2.94 8.78 37.16 0.33 -2.62 16 15 C -0.60 -15.39 8.09 -34.44 -0.28 -15.67 16 16 H 0.06 1.59 7.77 -52.49 -0.41 1.18 16 17 C 0.03 0.89 5.42 -17.82 -0.10 0.79 16 18 N -0.90 -26.10 13.69 55.43 0.76 -25.34 16 19 Si 1.05 23.50 25.39 -169.99 -4.32 19.18 16 20 H -0.28 -5.95 6.75 56.52 0.38 -5.57 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -5.62 6.37 56.52 0.36 -5.26 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.27 6.93 -51.93 -0.36 0.91 16 26 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.18 3.08 6.82 -52.48 -0.36 2.72 16 29 H 0.04 0.85 6.60 -51.93 -0.34 0.50 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.11 4.44 -51.93 -0.23 0.88 16 32 H 0.27 7.77 8.72 -40.82 -0.36 7.41 16 LS Contribution 269.77 15.07 4.07 4.07 Total: -1.00 -30.13 269.77 -6.40 -36.53 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.29 Total: 1.24 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.38 Total: -16.11 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.49 Total: -42.84 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.32 Total: 19.18 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.13 -6.40 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.579 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds