Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33487 * 125.69487 * 2 1 4 4 C 1.32559 * 109.15536 * 180.26486 * 3 2 1 5 5 C 1.41130 * 132.32891 * 179.77432 * 4 3 2 6 6 F 1.35096 * 120.35273 * 0.02562 * 5 4 3 7 7 C 1.36193 * 119.29010 * 179.97438 * 5 4 3 8 8 C 1.40484 * 119.67486 * 359.97438 * 7 5 4 9 9 C 1.34918 * 120.32058 * 359.97438 * 8 7 5 10 10 N 1.36576 * 120.65288 * 0.02562 * 9 8 7 11 11 C 1.35135 * 125.69346 * 179.83555 * 2 1 3 12 12 C 1.50702 * 126.41115 * 0.02562 * 11 2 1 13 13 H 1.09005 * 109.46761 * 3.08948 * 12 11 2 14 14 C 1.53000 * 109.46950 * 243.09364 * 12 11 2 15 15 C 1.50693 * 109.47004 * 123.08989 * 12 11 2 16 16 H 1.07998 * 120.00602 * 5.12014 * 15 12 11 17 17 C 1.37890 * 119.99877 * 185.11853 * 15 12 11 18 18 N 1.31506 * 120.00093 * 186.81920 * 17 15 12 19 19 Si 1.86800 * 119.99633 * 6.82366 * 17 15 12 20 20 H 1.48498 * 109.46780 * 269.99674 * 19 17 15 21 21 H 1.48503 * 109.46960 * 149.99999 * 19 17 15 22 22 H 1.48499 * 109.47338 * 29.99939 * 19 17 15 23 23 H 1.09001 * 109.47225 * 273.75390 * 1 2 3 24 24 H 1.08998 * 109.46695 * 33.75406 * 1 2 3 25 25 H 1.09003 * 109.46776 * 153.75480 * 1 2 3 26 26 H 1.07998 * 120.16423 * 179.97438 * 7 5 4 27 27 H 1.08005 * 119.83817 * 180.02562 * 8 7 5 28 28 H 1.08003 * 119.67409 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.47362 * 303.59067 * 14 12 11 30 30 H 1.08994 * 109.47380 * 63.59435 * 14 12 11 31 31 H 1.09007 * 109.46796 * 183.59551 * 14 12 11 32 32 H 0.97002 * 120.00121 * 354.91286 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0841 0.0000 4 6 3.5566 0.7067 -0.0058 5 6 4.7646 1.4364 -0.0125 6 9 4.7463 2.7872 -0.0133 7 6 5.9491 0.7641 -0.0170 8 6 5.9515 -0.6407 -0.0144 9 6 4.7880 -1.3238 -0.0070 10 7 3.5927 -0.6631 -0.0023 11 6 2.2955 -1.0975 0.0031 12 6 1.8324 -2.5316 0.0067 13 1 0.7442 -2.5621 -0.0490 14 6 2.2964 -3.2141 1.2950 15 6 2.4166 -3.2510 -1.1815 16 1 3.1238 -2.7473 -1.8238 17 6 2.0483 -4.5527 -1.4489 18 7 2.6550 -5.2251 -2.4023 19 14 0.6874 -5.3607 -0.4567 20 1 1.2729 -6.0325 0.7311 21 1 -0.0103 -6.3648 -1.2995 22 1 -0.2823 -4.3272 -0.0130 23 1 -0.3634 0.0673 1.0255 24 1 -0.3632 0.8544 -0.5710 25 1 -0.3633 -0.9218 -0.4545 26 1 6.8819 1.3083 -0.0225 27 1 6.8892 -1.1765 -0.0175 28 1 4.8020 -2.4037 -0.0046 29 1 3.3794 -3.1276 1.3823 30 1 1.8234 -2.7337 2.1514 31 1 2.0170 -4.2674 1.2691 32 1 3.3095 -4.7837 -2.9661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259800610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = 11.222038 kcal Electronic energy + Delta-G solvation = -18032.737808 eV Core-core repulsion = 15100.939685 eV Total energy + Delta-G solvation = -2931.798123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.04808 -43.87757 -38.52536 -36.69889 -34.30356 -33.54799 -31.97176 -29.88792 -28.25255 -26.80225 -24.63197 -23.96717 -22.33981 -21.26782 -19.70537 -18.69480 -18.50275 -17.47304 -17.35870 -16.42252 -16.23263 -16.12886 -15.29904 -15.08536 -14.62508 -14.14834 -14.12941 -13.92595 -13.60562 -13.49590 -13.20930 -12.89065 -12.86130 -12.46326 -12.38360 -11.74820 -11.64493 -11.62697 -11.16905 -10.91544 -10.59495 -9.64435 -8.87911 -8.54982 -6.42753 -0.39421 0.21368 1.46628 1.53280 1.57167 1.72658 1.80800 2.30352 2.48060 2.82884 3.08533 3.17727 3.64058 3.77502 3.87163 4.08894 4.33262 4.39678 4.51711 4.68827 4.77166 4.80875 4.81500 4.89225 4.92404 4.96460 5.07844 5.16317 5.47810 5.55291 5.65356 5.89578 5.98351 6.06924 6.49673 6.75621 7.36458 8.64171 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.008023 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.923129 B = 3488.982147 C = 4096.208995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.016 3.984 3 N -0.511 5.511 4 C 0.151 3.849 5 C 0.102 3.898 6 F -0.124 7.124 7 C -0.108 4.108 8 C -0.122 4.122 9 C 0.048 3.952 10 N -0.346 5.346 11 C -0.010 4.010 12 C 0.078 3.922 13 H 0.064 0.936 14 C -0.143 4.143 15 C -0.585 4.585 16 H 0.015 0.985 17 C -0.016 4.016 18 N -0.940 5.940 19 Si 1.085 2.915 20 H -0.260 1.260 21 H -0.296 1.296 22 H -0.243 1.243 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.195 0.805 27 H 0.201 0.799 28 H 0.164 0.836 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 7.553 8.225 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 N -0.233 5.233 4 C -0.093 4.093 5 C 0.080 3.920 6 F -0.103 7.103 7 C -0.132 4.132 8 C -0.143 4.143 9 C -0.073 4.073 10 N -0.018 5.018 11 C -0.124 4.124 12 C 0.058 3.942 13 H 0.081 0.919 14 C -0.200 4.200 15 C -0.623 4.623 16 H 0.033 0.967 17 C -0.213 4.213 18 N -0.576 5.576 19 Si 0.906 3.094 20 H -0.185 1.185 21 H -0.223 1.223 22 H -0.167 1.167 23 H 0.108 0.892 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.212 0.788 27 H 0.218 0.782 28 H 0.181 0.819 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.796 6.959 8.448 11.296 hybrid contribution 1.333 0.858 -0.972 1.860 sum 4.129 7.817 7.476 11.578 Atomic orbital electron populations 1.20205 0.84811 1.03457 1.03720 1.21275 0.98327 0.87005 1.04853 1.70492 0.98669 1.30459 1.23638 1.20933 0.94663 0.82148 1.11519 1.16390 0.90344 0.77070 1.08219 1.91487 1.97043 1.27681 1.94083 1.21484 0.97103 0.94805 0.99816 1.21095 0.97971 0.93215 1.02002 1.22266 0.83102 1.00198 1.01749 1.42452 1.06830 1.07042 1.45472 1.21709 0.80849 0.98792 1.11026 1.17876 0.97499 0.84206 0.94633 0.91866 1.22072 1.00772 1.00200 0.96996 1.22012 1.28125 1.00102 1.12056 0.96653 1.27150 1.00766 0.95260 0.98164 1.70959 1.27064 1.38481 1.21068 0.83537 0.74506 0.76318 0.74998 1.18510 1.22305 1.16687 0.89168 0.90439 0.90264 0.78805 0.78173 0.81865 0.93753 0.92453 0.92790 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.15 71.24 0.72 -1.36 16 2 C 0.02 0.67 7.06 41.59 0.29 0.97 16 3 N -0.51 -22.23 11.32 -182.27 -2.06 -24.29 16 4 C 0.15 6.15 7.80 134.17 1.05 7.20 16 5 C 0.10 3.35 7.34 22.50 0.17 3.51 16 6 F -0.12 -4.08 17.28 44.97 0.78 -3.30 16 7 C -0.11 -2.57 10.04 22.34 0.22 -2.35 16 8 C -0.12 -2.95 9.98 22.05 0.22 -2.73 16 9 C 0.05 1.64 9.63 83.19 0.80 2.44 16 10 N -0.35 -14.08 2.95 -338.68 -1.00 -15.08 16 11 C -0.01 -0.42 5.53 41.07 0.23 -0.19 16 12 C 0.08 3.42 2.13 -12.29 -0.03 3.39 16 13 H 0.06 2.70 5.16 -2.38 -0.01 2.69 16 14 C -0.14 -5.48 8.78 71.98 0.63 -4.85 16 15 C -0.58 -30.83 8.09 25.60 0.21 -30.62 16 16 H 0.02 0.90 7.77 -2.91 -0.02 0.88 16 17 C -0.02 -0.84 5.42 84.66 0.46 -0.38 16 18 N -0.94 -56.01 13.69 21.45 0.29 -55.72 16 19 Si 1.08 46.32 25.39 68.60 1.74 48.06 16 20 H -0.26 -10.13 6.75 99.48 0.67 -9.46 16 21 H -0.30 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.24 -9.04 6.37 99.48 0.63 -8.40 16 23 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.08 2.50 6.93 -2.39 -0.02 2.49 16 26 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 27 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.16 5.83 6.82 -2.91 -0.02 5.81 16 29 H 0.04 1.66 6.60 -2.39 -0.02 1.64 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 2.06 4.44 -2.38 -0.01 2.05 16 32 H 0.25 15.30 8.72 -92.71 -0.81 14.49 16 Total: -1.00 -68.84 269.77 5.73 -63.11 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.00 Total: 12.18 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.97 Total: -24.97 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -2.77 Total: -95.09 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.74 Total: 48.06 kcal Total: -68.84 5.73 -63.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.336 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds