Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34167 * 126.05531 * 2 1 4 4 C 1.31500 * 108.61975 * 179.97438 * 3 2 1 5 5 C 1.47047 * 125.76011 * 180.02562 * 4 3 2 6 6 C 1.36141 * 126.61880 * 359.97438 * 5 4 3 7 7 N 1.33971 * 107.48106 * 179.97438 * 6 5 4 8 8 C 1.30443 * 108.95694 * 359.97438 * 7 6 5 9 9 O 1.33933 * 109.10652 * 359.73343 * 8 7 6 10 10 O 1.34548 * 108.48540 * 359.75668 * 4 3 2 11 11 C 1.34514 * 126.05115 * 179.97438 * 2 1 3 12 12 C 1.50697 * 126.33785 * 359.97438 * 11 2 1 13 13 C 1.52997 * 109.47466 * 90.00004 * 12 11 2 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.09006 * 109.47085 * 270.02615 * 1 2 3 23 23 H 1.09002 * 109.47324 * 30.02032 * 1 2 3 24 24 H 1.09002 * 109.47339 * 150.02196 * 1 2 3 25 25 H 1.07998 * 126.26080 * 359.97438 * 6 5 4 26 26 H 1.08002 * 125.44462 * 179.97438 * 8 7 6 27 27 H 1.09002 * 109.47120 * 329.99757 * 12 11 2 28 28 H 1.08998 * 109.46862 * 210.00559 * 12 11 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 13 12 11 30 30 H 1.09001 * 109.46832 * 299.99964 * 13 12 11 31 31 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2967 1.0847 0.0000 4 6 3.5513 0.6907 0.0006 5 6 4.7286 1.5716 0.0013 6 6 4.7242 2.9330 0.0010 7 7 6.0008 3.3396 0.0025 8 6 6.7789 2.2927 0.0042 9 8 6.0248 1.1859 0.0097 10 8 3.5759 -0.6546 0.0063 11 6 2.2987 -1.0875 0.0005 12 6 1.8427 -2.5239 0.0017 13 6 1.6879 -3.0111 -1.4404 14 6 1.2325 -4.4476 -1.4391 15 1 1.0694 -4.9616 -0.5034 16 6 1.0231 -5.1055 -2.6326 17 7 0.6253 -6.3590 -2.6315 18 14 1.3045 -4.2162 -4.2511 19 1 2.7136 -4.4042 -4.6807 20 1 0.3938 -4.7701 -5.2850 21 1 1.0299 -2.7676 -4.0743 22 1 -0.3633 0.0005 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 3.8514 3.5689 -0.0002 26 1 7.8587 2.3149 0.0052 27 1 0.8847 -2.6006 0.5159 28 1 2.5812 -3.1390 0.5158 29 1 2.6459 -2.9344 -1.9546 30 1 0.9493 -2.3959 -1.9544 31 1 0.4783 -6.8219 -3.4711 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259841571.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = 37.772100 kcal Electronic energy + Delta-G solvation = -17073.309753 eV Core-core repulsion = 14130.290138 eV Total energy + Delta-G solvation = -2943.019615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.67360 -43.10301 -35.34679 -34.99232 -34.61264 -32.66510 -31.29611 -29.60830 -27.48031 -25.46119 -23.28409 -23.06273 -21.42675 -21.15767 -20.16051 -18.31843 -17.22160 -17.03522 -16.54853 -16.26245 -15.28693 -14.61732 -14.35189 -13.88704 -13.50936 -13.45274 -13.12445 -12.77053 -12.63438 -12.00675 -11.74078 -11.72354 -11.16834 -11.13370 -11.04931 -10.73825 -10.36334 -10.22297 -9.86836 -9.67288 -9.37617 -8.65717 -8.01798 -6.16335 -4.16749 0.52109 1.83400 2.01660 2.36425 2.69782 2.87113 3.24055 3.32108 3.35456 3.86572 4.21041 4.35220 4.68992 4.88649 4.95848 5.17277 5.25626 5.32534 5.53755 5.76068 5.77868 5.94253 5.96518 6.00598 6.08951 6.22594 6.37204 6.52259 7.03474 7.14803 7.27906 7.60192 7.70083 8.36699 8.86067 9.44780 10.96412 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.005104 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.377346 B = 5484.822029 C = 5896.144155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 N -0.436 5.436 4 C 0.225 3.775 5 C 0.037 3.963 6 C 0.028 3.972 7 N -0.487 5.487 8 C 0.188 3.812 9 O -0.191 6.191 10 O -0.187 6.187 11 C 0.009 3.991 12 C -0.029 4.029 13 C -0.008 4.008 14 C -0.527 4.527 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.265 1.265 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.199 0.801 26 H 0.258 0.742 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.015 0.985 30 H 0.023 0.977 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 15.908 5.603 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.147 4.147 3 N -0.169 5.169 4 C 0.023 3.977 5 C -0.017 4.017 6 C -0.115 4.115 7 N -0.215 5.215 8 C -0.037 4.037 9 O -0.076 6.076 10 O -0.073 6.073 11 C -0.045 4.045 12 C -0.067 4.067 13 C -0.045 4.045 14 C -0.564 4.564 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.190 1.190 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.216 0.784 26 H 0.274 0.726 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.187 16.897 5.489 19.165 hybrid contribution 0.389 -1.056 -0.968 1.485 sum 7.577 15.841 4.521 18.132 Atomic orbital electron populations 1.20155 0.85680 1.03970 1.02878 1.21503 0.98195 0.86790 1.08257 1.70453 0.98428 1.31555 1.16450 1.21210 0.90383 0.78387 1.07679 1.18987 0.79557 0.91604 1.11582 1.23373 0.95536 0.90716 1.01845 1.70463 1.01550 1.31205 1.18261 1.28293 0.99475 0.77046 0.98910 1.84555 1.15874 1.37795 1.69425 1.84589 1.31052 1.22204 1.69470 1.24389 0.79202 0.99669 1.01237 1.20453 1.01271 0.82836 1.02101 1.19614 0.97107 0.97634 0.90166 1.20987 1.46206 0.94403 0.94850 0.90533 1.24957 0.94265 0.94655 0.99085 1.69893 1.46270 1.10227 1.27166 0.86835 0.78499 0.80646 0.83724 1.20187 1.21076 1.18973 0.90784 0.90759 0.89557 0.78450 0.72646 0.88317 0.90057 0.96650 0.95836 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.04 36.01 0.36 -0.58 16 2 C -0.03 -0.43 7.09 -82.89 -0.59 -1.02 16 3 N -0.44 -7.40 11.29 -8.12 -0.09 -7.49 16 4 C 0.23 3.83 8.16 -14.12 -0.12 3.71 16 5 C 0.04 0.53 7.30 -36.77 -0.27 0.26 16 6 C 0.03 0.34 11.84 -17.37 -0.21 0.14 16 7 N -0.49 -5.64 11.26 -14.63 -0.16 -5.80 16 8 C 0.19 1.74 13.21 52.17 0.69 2.42 16 9 O -0.19 -2.46 10.80 4.06 0.04 -2.41 16 10 O -0.19 -3.50 10.81 3.47 0.04 -3.46 16 11 C 0.01 0.16 6.64 -35.63 -0.24 -0.08 16 12 C -0.03 -0.55 5.30 -27.89 -0.15 -0.70 16 13 C -0.01 -0.18 4.02 -27.88 -0.11 -0.29 16 14 C -0.53 -14.29 9.66 -34.44 -0.33 -14.63 16 15 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 18 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.09 1.18 7.77 -51.93 -0.40 0.78 16 25 H 0.20 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.26 0.87 8.06 -52.49 -0.42 0.44 16 27 H 0.10 1.68 7.78 -51.93 -0.40 1.27 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 30 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -32.41 282.24 -4.15 -36.56 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -3.27 Total: -3.42 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.05 Total: -8.80 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.52 Total: -39.34 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: 0.08 Total: -5.88 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.41 -4.15 -36.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259841571.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.329 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds