Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34167 * 126.05531 * 2 1 4 4 C 1.31500 * 108.61975 * 179.97438 * 3 2 1 5 5 C 1.47047 * 125.76011 * 180.02562 * 4 3 2 6 6 C 1.36141 * 126.61880 * 359.97438 * 5 4 3 7 7 N 1.33971 * 107.48106 * 179.97438 * 6 5 4 8 8 C 1.30443 * 108.95694 * 359.97438 * 7 6 5 9 9 O 1.33933 * 109.10652 * 359.73343 * 8 7 6 10 10 O 1.34548 * 108.48540 * 359.75668 * 4 3 2 11 11 C 1.34514 * 126.05115 * 179.97438 * 2 1 3 12 12 C 1.50697 * 126.33785 * 359.97438 * 11 2 1 13 13 C 1.52997 * 109.47466 * 90.00004 * 12 11 2 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.09006 * 109.47085 * 270.02615 * 1 2 3 23 23 H 1.09002 * 109.47324 * 30.02032 * 1 2 3 24 24 H 1.09002 * 109.47339 * 150.02196 * 1 2 3 25 25 H 1.07998 * 126.26080 * 359.97438 * 6 5 4 26 26 H 1.08002 * 125.44462 * 179.97438 * 8 7 6 27 27 H 1.09002 * 109.47120 * 329.99757 * 12 11 2 28 28 H 1.08998 * 109.46862 * 210.00559 * 12 11 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 13 12 11 30 30 H 1.09001 * 109.46832 * 299.99964 * 13 12 11 31 31 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2967 1.0847 0.0000 4 6 3.5513 0.6907 0.0006 5 6 4.7286 1.5716 0.0013 6 6 4.7242 2.9330 0.0010 7 7 6.0008 3.3396 0.0025 8 6 6.7789 2.2927 0.0042 9 8 6.0248 1.1859 0.0097 10 8 3.5759 -0.6546 0.0063 11 6 2.2987 -1.0875 0.0005 12 6 1.8427 -2.5239 0.0017 13 6 1.6879 -3.0111 -1.4404 14 6 1.2325 -4.4476 -1.4391 15 1 1.0694 -4.9616 -0.5034 16 6 1.0231 -5.1055 -2.6326 17 7 0.6253 -6.3590 -2.6315 18 14 1.3045 -4.2162 -4.2511 19 1 2.7136 -4.4042 -4.6807 20 1 0.3938 -4.7701 -5.2850 21 1 1.0299 -2.7676 -4.0743 22 1 -0.3633 0.0005 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 3.8514 3.5689 -0.0002 26 1 7.8587 2.3149 0.0052 27 1 0.8847 -2.6006 0.5159 28 1 2.5812 -3.1390 0.5158 29 1 2.6459 -2.9344 -1.9546 30 1 0.9493 -2.3959 -1.9544 31 1 0.4783 -6.8219 -3.4711 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259841571.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = 12.212992 kcal Electronic energy + Delta-G solvation = -17074.418079 eV Core-core repulsion = 14130.290138 eV Total energy + Delta-G solvation = -2944.127941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.69402 -44.28094 -36.61610 -36.28868 -35.91774 -34.42551 -32.74054 -30.77611 -28.96730 -26.85352 -24.61598 -24.00355 -22.76270 -22.57724 -21.53424 -19.33688 -19.06488 -18.26735 -17.65002 -17.43465 -16.56034 -16.35150 -15.56092 -15.26503 -14.94436 -14.72568 -14.48736 -14.19600 -13.97459 -13.57680 -13.06473 -12.98304 -12.64441 -12.52077 -12.25442 -12.05840 -11.94055 -11.91498 -11.66250 -11.41073 -10.80884 -10.77824 -9.22951 -8.32884 -6.37470 -0.54477 0.68115 1.02555 1.32399 1.34616 1.38149 1.45094 1.53080 1.71665 2.31774 3.02534 3.02829 3.27728 3.59594 3.73934 3.79857 4.05136 4.33855 4.45243 4.46957 4.59222 4.68590 4.79278 4.84216 4.88325 4.95414 5.17010 5.19674 5.32825 5.40444 5.56242 6.20879 6.32766 6.49467 6.69770 7.27473 8.83097 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.005104 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.377346 B = 5484.822029 C = 5896.144155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.017 4.017 3 N -0.450 5.450 4 C 0.235 3.765 5 C -0.010 4.010 6 C 0.052 3.948 7 N -0.513 5.513 8 C 0.224 3.776 9 O -0.207 6.207 10 O -0.207 6.207 11 C -0.026 4.026 12 C -0.016 4.016 13 C -0.003 4.003 14 C -0.530 4.530 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.943 5.943 18 Si 0.938 3.062 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.251 1.251 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.211 0.789 26 H 0.312 0.688 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.007 0.993 30 H 0.029 0.971 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 18.393 5.274 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.139 4.139 3 N -0.183 5.183 4 C 0.032 3.968 5 C -0.063 4.063 6 C -0.090 4.090 7 N -0.241 5.241 8 C 0.000 4.000 9 O -0.093 6.093 10 O -0.094 6.094 11 C -0.078 4.078 12 C -0.054 4.054 13 C -0.040 4.040 14 C -0.568 4.568 15 H 0.066 0.934 16 C -0.182 4.182 17 N -0.583 5.583 18 Si 0.762 3.238 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.175 1.175 22 H 0.114 0.886 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.228 0.772 26 H 0.327 0.673 27 H 0.132 0.868 28 H 0.095 0.905 29 H 0.025 0.975 30 H 0.047 0.953 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.226 19.402 5.171 21.699 hybrid contribution 0.236 -1.714 -0.774 1.895 sum 8.462 17.689 4.397 20.096 Atomic orbital electron populations 1.20299 0.83513 1.04425 1.04472 1.22017 0.99531 0.86289 1.06021 1.70506 0.98501 1.31381 1.17873 1.21839 0.91464 0.77982 1.05485 1.18944 0.79714 0.91765 1.15891 1.23655 0.96487 0.90047 0.98820 1.70559 1.01316 1.32008 1.20212 1.29665 1.01026 0.75486 0.93838 1.84567 1.15572 1.39230 1.69949 1.84551 1.31485 1.23239 1.70100 1.24117 0.79497 0.99443 1.04770 1.20157 1.02127 0.83619 0.99474 1.19485 0.96363 0.95106 0.93073 1.21310 1.45323 0.96441 0.93755 0.93417 1.25814 0.94210 0.95327 1.02893 1.70025 1.48084 1.11982 1.28251 0.85839 0.78491 0.80126 0.79328 1.19827 1.20419 1.17458 0.88582 0.89423 0.89879 0.77213 0.67302 0.86763 0.90544 0.97464 0.95260 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 10.04 71.24 0.71 -1.04 16 2 C -0.02 -0.56 7.09 41.35 0.29 -0.27 16 3 N -0.45 -14.81 11.29 -293.47 -3.31 -18.13 16 4 C 0.23 7.84 8.16 87.05 0.71 8.55 16 5 C -0.01 -0.27 7.30 24.09 0.18 -0.09 16 6 C 0.05 1.19 11.84 83.88 0.99 2.18 16 7 N -0.51 -10.40 11.26 -314.91 -3.55 -13.95 16 8 C 0.22 3.34 13.21 130.45 1.72 5.06 16 9 O -0.21 -4.90 10.80 -8.38 -0.09 -4.99 16 10 O -0.21 -7.74 10.81 -10.49 -0.11 -7.85 16 11 C -0.03 -0.92 6.64 24.83 0.16 -0.76 16 12 C -0.02 -0.62 5.30 29.85 0.16 -0.46 16 13 C 0.00 -0.13 4.02 29.85 0.12 -0.01 16 14 C -0.53 -29.30 9.66 25.60 0.25 -29.05 16 15 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 16 C 0.02 0.89 5.47 84.66 0.46 1.35 16 17 N -0.94 -57.54 13.96 21.45 0.30 -57.24 16 18 Si 0.94 43.78 27.47 68.60 1.88 45.66 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 22 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.08 2.14 7.77 -2.39 -0.02 2.12 16 25 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 26 H 0.31 0.44 8.06 -2.91 -0.02 0.41 16 27 H 0.11 3.85 7.78 -2.39 -0.02 3.84 16 28 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 30 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -71.04 282.24 1.98 -69.07 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: 1.09 Total: 1.96 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.76 Total: -14.54 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -6.56 Total: -89.31 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.20 Total: -12.84 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -71.04 1.98 -69.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259841571.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.281 kcal (2) G-P(sol) polarization free energy of solvation -71.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds