Wall clock time and date at job start Mon Mar 30 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33488 * 125.69273 * 2 1 4 4 C 1.32562 * 109.15293 * 179.97438 * 3 2 1 5 5 C 1.41130 * 132.32832 * 180.02562 * 4 3 2 6 6 F 1.35098 * 120.35307 * 359.97357 * 5 4 3 7 7 C 1.36196 * 119.29225 * 179.97438 * 5 4 3 8 8 C 1.40478 * 119.67145 * 0.25054 * 7 5 4 9 9 C 1.34923 * 120.32244 * 359.48397 * 8 7 5 10 10 N 1.36578 * 120.64886 * 0.51725 * 9 8 7 11 11 C 1.35129 * 125.69612 * 179.97438 * 2 1 3 12 12 C 1.50702 * 126.40685 * 0.03385 * 11 2 1 13 13 C 1.52997 * 109.47131 * 269.97596 * 12 11 2 14 14 C 1.50702 * 109.47131 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99907 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00160 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47105 * 89.99752 * 18 16 14 20 20 H 1.48494 * 109.47216 * 210.00133 * 18 16 14 21 21 H 1.48500 * 109.46803 * 329.99927 * 18 16 14 22 22 H 1.08999 * 109.47042 * 90.01951 * 1 2 3 23 23 H 1.08998 * 109.46841 * 210.02005 * 1 2 3 24 24 H 1.09000 * 109.46664 * 330.02071 * 1 2 3 25 25 H 1.08002 * 120.16067 * 179.97438 * 7 5 4 26 26 H 1.07998 * 119.83815 * 179.71972 * 8 7 5 27 27 H 1.07996 * 119.67416 * 180.26122 * 9 8 7 28 28 H 1.09006 * 109.47414 * 29.97687 * 12 11 2 29 29 H 1.09000 * 109.46888 * 149.97372 * 12 11 2 30 30 H 1.08998 * 109.47328 * 300.00170 * 13 12 11 31 31 H 1.09000 * 109.47417 * 60.00100 * 13 12 11 32 32 H 0.97003 * 120.00286 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2859 1.0841 0.0000 4 6 3.5566 0.7068 0.0006 5 6 4.7647 1.4364 0.0013 6 9 4.7463 2.7873 0.0010 7 6 5.9492 0.7642 0.0023 8 6 5.9515 -0.6406 -0.0028 9 6 4.7880 -1.3237 0.0019 10 7 3.5927 -0.6630 0.0010 11 6 2.2955 -1.0974 0.0005 12 6 1.8324 -2.5315 0.0004 13 6 1.6756 -3.0169 1.4429 14 6 1.2118 -4.4508 1.4428 15 1 1.0460 -4.9646 0.5075 16 6 1.0003 -5.1069 2.6368 17 7 1.2027 -4.4814 3.7758 18 14 0.4262 -6.8846 2.6368 19 1 1.6064 -7.7859 2.6363 20 1 -0.3918 -7.1406 3.8494 21 1 -0.3925 -7.1402 1.4245 22 1 -0.3633 -0.0003 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3632 0.8902 0.5135 25 1 6.8820 1.3085 0.0024 26 1 6.8892 -1.1764 -0.0066 27 1 4.8021 -2.4036 0.0023 28 1 0.8738 -2.6038 -0.5135 29 1 2.5677 -3.1507 -0.5134 30 1 2.6340 -2.9446 1.9568 31 1 0.9402 -2.3977 1.9567 32 1 1.0535 -4.9429 4.6159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259847397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:09 Heat of formation + Delta-G solvation = 23.402522 kcal Electronic energy + Delta-G solvation = -17383.335448 eV Core-core repulsion = 14452.065511 eV Total energy + Delta-G solvation = -2931.269937 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.90127 -42.62170 -37.38366 -34.40135 -33.06551 -32.06964 -30.45585 -28.61845 -27.21341 -25.21710 -22.80786 -22.54928 -21.05976 -19.96317 -17.62964 -17.38063 -16.48954 -16.25489 -16.15532 -15.43414 -14.95855 -14.51418 -14.09935 -13.34546 -13.23568 -12.91568 -12.67764 -12.40030 -12.28124 -12.04758 -11.71904 -11.39869 -11.23653 -11.03097 -10.78104 -10.47636 -10.21212 -9.85423 -9.66240 -9.23716 -8.46011 -8.38265 -7.43474 -6.09768 -4.14631 0.71437 1.35230 2.67604 3.05447 3.25418 3.32719 3.35321 3.48653 3.95420 4.31599 4.37511 4.66379 4.82802 4.95359 5.25880 5.44230 5.47136 5.52471 5.79934 5.80340 5.96234 5.98700 6.07756 6.28070 6.37541 6.43563 6.65271 6.70437 6.94731 7.23376 7.53105 7.62449 7.87505 8.05523 8.25695 8.92114 9.50595 11.00947 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.005588 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.081309 B = 5009.142340 C = 5538.518273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.046 3.954 3 N -0.473 5.473 4 C 0.171 3.829 5 C 0.140 3.860 6 F -0.119 7.119 7 C -0.146 4.146 8 C -0.138 4.138 9 C 0.067 3.933 10 N -0.350 5.350 11 C -0.010 4.010 12 C -0.041 4.041 13 C 0.030 3.970 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.149 0.851 26 H 0.157 0.843 27 H 0.170 0.830 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.013 0.987 31 H 0.023 0.977 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 7.098 -8.229 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 N -0.193 5.193 4 C -0.073 4.073 5 C 0.118 3.882 6 F -0.097 7.097 7 C -0.170 4.170 8 C -0.159 4.159 9 C -0.055 4.055 10 N -0.022 5.022 11 C -0.124 4.124 12 C -0.079 4.079 13 C -0.008 4.008 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.167 0.833 26 H 0.174 0.826 27 H 0.187 0.813 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.213 7.894 -8.037 13.376 hybrid contribution 0.171 -1.504 0.247 1.534 sum 7.384 6.390 -7.789 12.491 Atomic orbital electron populations 1.20166 0.86573 1.03710 1.02374 1.20734 0.96906 0.87059 1.03845 1.70562 0.97763 1.29842 1.21154 1.20357 0.93928 0.81446 1.11539 1.16108 0.90168 0.77041 1.04870 1.91518 1.97042 1.27523 1.93638 1.20928 0.96735 0.94853 1.04532 1.20473 0.97565 0.93114 1.04781 1.21790 0.82824 0.99666 1.01175 1.42486 1.06271 1.07356 1.46131 1.21857 0.80007 0.99493 1.11002 1.20424 1.00381 0.84637 1.02493 1.19094 0.97453 0.95965 0.88259 1.21170 1.45871 0.96907 0.92478 0.92403 1.25020 0.95387 0.98242 0.95591 1.69970 1.48792 1.36927 0.97366 0.86574 0.78780 0.84881 0.77664 1.20655 1.21148 1.19740 0.91165 0.89738 0.91031 0.83323 0.82564 0.81260 0.89959 0.92177 0.96876 0.95900 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.03 36.01 0.36 -0.75 16 2 C 0.05 0.88 7.06 -82.98 -0.59 0.29 16 3 N -0.47 -9.48 11.32 -8.96 -0.10 -9.58 16 4 C 0.17 3.16 7.80 -156.01 -1.22 1.95 16 5 C 0.14 2.17 7.34 -39.22 -0.29 1.89 16 6 F -0.12 -1.86 17.28 2.25 0.04 -1.82 16 7 C -0.15 -1.73 10.04 -39.47 -0.40 -2.13 16 8 C -0.14 -1.53 9.98 -39.91 -0.40 -1.93 16 9 C 0.07 0.94 10.85 -16.61 -0.18 0.76 16 10 N -0.35 -6.21 2.95 -58.41 -0.17 -6.38 16 11 C -0.01 -0.19 6.29 -81.48 -0.51 -0.71 16 12 C -0.04 -0.80 5.18 -27.88 -0.14 -0.94 16 13 C 0.03 0.73 4.95 -27.88 -0.14 0.59 16 14 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.08 1.51 7.77 -51.93 -0.40 1.11 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 286.24 15.07 4.31 4.31 Total: -1.00 -31.86 286.24 -7.85 -39.70 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -3.73 Total: -2.85 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -3.91 Total: -13.78 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.46 Total: -41.33 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.86 -7.85 -39.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259847397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.104 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds