Wall clock time and date at job start Mon Mar 30 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33488 * 125.69273 * 2 1 4 4 C 1.32562 * 109.15293 * 179.97438 * 3 2 1 5 5 C 1.41130 * 132.32832 * 180.02562 * 4 3 2 6 6 F 1.35098 * 120.35307 * 359.97357 * 5 4 3 7 7 C 1.36196 * 119.29225 * 179.97438 * 5 4 3 8 8 C 1.40478 * 119.67145 * 0.25054 * 7 5 4 9 9 C 1.34923 * 120.32244 * 359.48397 * 8 7 5 10 10 N 1.36578 * 120.64886 * 0.51725 * 9 8 7 11 11 C 1.35129 * 125.69612 * 179.97438 * 2 1 3 12 12 C 1.50702 * 126.40685 * 0.03385 * 11 2 1 13 13 C 1.52997 * 109.47131 * 269.97596 * 12 11 2 14 14 C 1.50702 * 109.47131 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99907 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00160 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47105 * 89.99752 * 18 16 14 20 20 H 1.48494 * 109.47216 * 210.00133 * 18 16 14 21 21 H 1.48500 * 109.46803 * 329.99927 * 18 16 14 22 22 H 1.08999 * 109.47042 * 90.01951 * 1 2 3 23 23 H 1.08998 * 109.46841 * 210.02005 * 1 2 3 24 24 H 1.09000 * 109.46664 * 330.02071 * 1 2 3 25 25 H 1.08002 * 120.16067 * 179.97438 * 7 5 4 26 26 H 1.07998 * 119.83815 * 179.71972 * 8 7 5 27 27 H 1.07996 * 119.67416 * 180.26122 * 9 8 7 28 28 H 1.09006 * 109.47414 * 29.97687 * 12 11 2 29 29 H 1.09000 * 109.46888 * 149.97372 * 12 11 2 30 30 H 1.08998 * 109.47328 * 300.00170 * 13 12 11 31 31 H 1.09000 * 109.47417 * 60.00100 * 13 12 11 32 32 H 0.97003 * 120.00286 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2859 1.0841 0.0000 4 6 3.5566 0.7068 0.0006 5 6 4.7647 1.4364 0.0013 6 9 4.7463 2.7873 0.0010 7 6 5.9492 0.7642 0.0023 8 6 5.9515 -0.6406 -0.0028 9 6 4.7880 -1.3237 0.0019 10 7 3.5927 -0.6630 0.0010 11 6 2.2955 -1.0974 0.0005 12 6 1.8324 -2.5315 0.0004 13 6 1.6756 -3.0169 1.4429 14 6 1.2118 -4.4508 1.4428 15 1 1.0460 -4.9646 0.5075 16 6 1.0003 -5.1069 2.6368 17 7 1.2027 -4.4814 3.7758 18 14 0.4262 -6.8846 2.6368 19 1 1.6064 -7.7859 2.6363 20 1 -0.3918 -7.1406 3.8494 21 1 -0.3925 -7.1402 1.4245 22 1 -0.3633 -0.0003 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3632 0.8902 0.5135 25 1 6.8820 1.3085 0.0024 26 1 6.8892 -1.1764 -0.0066 27 1 4.8021 -2.4036 0.0023 28 1 0.8738 -2.6038 -0.5135 29 1 2.5677 -3.1507 -0.5134 30 1 2.6340 -2.9446 1.9568 31 1 0.9402 -2.3977 1.9567 32 1 1.0535 -4.9429 4.6159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259847397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:08 Heat of formation + Delta-G solvation = 5.648215 kcal Electronic energy + Delta-G solvation = -17384.105332 eV Core-core repulsion = 14452.065511 eV Total energy + Delta-G solvation = -2932.039822 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.04049 -43.90947 -38.55313 -36.15921 -34.54018 -33.64202 -31.90507 -29.94685 -28.62656 -26.89539 -24.10833 -23.97913 -22.64432 -21.31423 -18.97750 -18.54472 -18.37897 -17.48896 -17.46710 -16.54389 -16.51351 -16.12905 -15.24896 -14.95291 -14.77543 -14.18981 -14.12833 -13.93769 -13.52255 -13.44494 -13.00631 -12.88487 -12.84069 -12.54823 -12.47337 -11.98263 -11.93218 -11.46851 -11.36582 -11.08109 -10.56669 -9.64941 -8.73455 -8.19300 -6.32316 -0.40222 0.15568 1.42558 1.44235 1.45412 1.55451 1.73398 2.29469 2.42146 2.81170 3.14301 3.15290 3.62391 3.70928 3.86706 4.06672 4.17405 4.41365 4.52167 4.71430 4.78530 4.82086 4.90063 4.90905 4.96568 5.04229 5.08442 5.45722 5.49124 5.60925 5.65311 5.80959 6.00100 6.18660 6.71290 6.84810 7.38192 8.91862 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.005588 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.081309 B = 5009.142340 C = 5538.518273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.033 3.967 3 N -0.517 5.517 4 C 0.161 3.839 5 C 0.099 3.901 6 F -0.126 7.126 7 C -0.106 4.106 8 C -0.112 4.112 9 C 0.036 3.964 10 N -0.353 5.353 11 C -0.045 4.045 12 C -0.020 4.020 13 C 0.040 3.960 14 C -0.538 4.538 15 H 0.070 0.930 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.259 1.259 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.195 0.805 26 H 0.209 0.791 27 H 0.182 0.818 28 H 0.091 0.909 29 H 0.073 0.927 30 H -0.016 1.016 31 H -0.010 1.010 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.596 6.057 -9.389 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 N -0.239 5.239 4 C -0.083 4.083 5 C 0.077 3.923 6 F -0.104 7.104 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.085 4.085 10 N -0.025 5.025 11 C -0.158 4.158 12 C -0.058 4.058 13 C 0.003 3.997 14 C -0.576 4.576 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.183 1.183 22 H 0.111 0.889 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.212 0.788 26 H 0.226 0.774 27 H 0.200 0.800 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.002 0.998 31 H 0.008 0.992 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.255 6.840 -9.219 14.746 hybrid contribution -0.254 -1.115 0.611 1.297 sum 9.002 5.725 -8.608 13.708 Atomic orbital electron populations 1.20204 0.85172 1.03365 1.03731 1.21209 0.98151 0.87138 1.03297 1.70528 0.98923 1.30552 1.23854 1.20948 0.94549 0.82210 1.10579 1.16474 0.90399 0.77118 1.08299 1.91495 1.97032 1.27839 1.94070 1.21580 0.96954 0.95273 0.99195 1.21180 0.98330 0.92893 1.00777 1.22452 0.82637 1.00837 1.02541 1.42625 1.06841 1.07311 1.45693 1.21663 0.81078 0.98987 1.14071 1.20069 1.01399 0.85352 0.98993 1.18887 0.94693 0.95055 0.91102 1.21628 1.45157 0.97834 0.92987 0.91185 1.25976 0.95495 1.02996 0.95175 1.70122 1.50314 1.38993 0.98110 0.85435 0.78502 0.79149 0.77897 1.19727 1.21300 1.18325 0.88889 0.90633 0.90668 0.78818 0.77393 0.80041 0.89043 0.90819 0.99776 0.99153 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.19 10.03 71.24 0.71 -1.48 16 2 C 0.03 1.32 7.06 41.59 0.29 1.62 16 3 N -0.52 -21.49 11.32 -182.28 -2.06 -23.55 16 4 C 0.16 6.02 7.80 134.17 1.05 7.07 16 5 C 0.10 2.94 7.34 22.50 0.17 3.11 16 6 F -0.13 -3.86 17.28 44.97 0.78 -3.08 16 7 C -0.11 -2.07 10.04 22.34 0.22 -1.84 16 8 C -0.11 -1.98 9.98 22.05 0.22 -1.76 16 9 C 0.04 0.95 10.85 83.19 0.90 1.85 16 10 N -0.35 -12.51 2.95 -338.69 -1.00 -13.51 16 11 C -0.04 -1.76 6.29 41.07 0.26 -1.50 16 12 C -0.02 -0.78 5.18 29.85 0.15 -0.63 16 13 C 0.04 2.04 4.95 29.85 0.15 2.19 16 14 C -0.54 -28.91 9.11 25.60 0.23 -28.67 16 15 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.94 -56.01 13.29 21.45 0.28 -55.73 16 18 Si 0.97 42.48 29.54 68.60 2.03 44.50 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 23 H 0.07 2.55 7.75 -2.39 -0.02 2.53 16 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 26 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 27 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 28 H 0.09 3.39 7.77 -2.38 -0.02 3.37 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -72.42 286.24 5.97 -66.45 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.12 Total: 4.42 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.82 Total: -19.50 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -2.78 Total: -92.79 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -72.42 5.97 -66.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259847397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.095 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds