Wall clock time and date at job start Mon Mar 30 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47179 * 2 1 4 4 C 1.50709 * 109.47017 * 240.00649 * 2 1 3 5 5 H 1.08001 * 119.99600 * 240.00071 * 4 2 1 6 6 C 1.37871 * 120.00165 * 59.99716 * 4 2 1 7 7 N 1.31512 * 119.99937 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00197 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47217 * 60.00016 * 8 6 4 10 10 H 1.48489 * 109.47326 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47050 * 300.00241 * 8 6 4 12 12 C 1.50696 * 109.47108 * 120.00824 * 2 1 3 13 13 C 1.36434 * 119.69896 * 59.99827 * 12 2 1 14 14 C 1.39894 * 119.81326 * 180.02562 * 13 12 2 15 15 C 1.45966 * 133.92433 * 179.97438 * 14 13 12 16 16 N 1.30230 * 107.79548 * 179.97438 * 15 14 13 17 17 N 1.39868 * 110.09857 * 359.78220 * 16 15 14 18 18 C 1.46496 * 125.46566 * 180.02562 * 17 16 15 19 19 C 1.37059 * 109.07028 * 0.36422 * 17 16 15 20 20 C 1.39234 * 133.79199 * 179.97438 * 19 17 16 21 21 C 1.37835 * 119.71510 * 179.74643 * 20 19 17 22 22 F 1.35102 * 119.68996 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46832 * 299.99699 * 1 2 3 25 25 H 1.09003 * 109.46617 * 59.99350 * 1 2 3 26 26 H 0.97007 * 120.00299 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.09207 * 0.02562 * 13 12 2 28 28 H 1.07995 * 126.10305 * 359.96462 * 15 14 13 29 29 H 1.09002 * 109.46714 * 270.41072 * 18 17 16 30 30 H 1.09003 * 109.46930 * 30.40610 * 18 17 16 31 31 H 1.08997 * 109.47639 * 150.40831 * 18 17 16 32 32 H 1.08002 * 120.14064 * 359.71004 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 1.8258 -2.5199 -4.0081 10 1 1.8269 -0.4195 -5.2205 11 1 3.8063 -1.1206 -4.0084 12 6 2.0323 -0.7106 1.2303 13 6 1.6989 -2.0168 1.4400 14 6 2.1635 -2.6786 2.5816 15 6 2.0032 -4.0326 3.1027 16 7 2.6628 -4.1086 4.2230 17 7 3.2753 -2.8830 4.5042 18 6 4.1003 -2.5950 5.6801 19 6 2.9737 -1.9924 3.5070 20 6 3.3034 -0.6601 3.2728 21 6 2.8328 -0.0285 2.1417 22 9 3.1526 1.2644 1.9152 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 0.7088 1.1617 -3.4844 27 1 1.0781 -2.5385 0.7266 28 1 1.4384 -4.8293 2.6415 29 1 3.4662 -2.2299 6.4880 30 1 4.6078 -3.5053 5.9996 31 1 4.8405 -1.8358 5.4276 32 1 3.9248 -0.1238 3.9747 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850307.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:05 Heat of formation + Delta-G solvation = 19.674371 kcal Electronic energy + Delta-G solvation = -17597.659647 eV Core-core repulsion = 14666.228045 eV Total energy + Delta-G solvation = -2931.431602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.87452 -42.15837 -38.63085 -35.77792 -34.38734 -33.04372 -30.68891 -29.70251 -27.34657 -27.13719 -24.64026 -23.42486 -21.72136 -21.45066 -18.78912 -18.22033 -17.96804 -17.07022 -16.73569 -16.41752 -16.14882 -15.97270 -15.27038 -14.71962 -14.68024 -14.08603 -13.83921 -13.73625 -13.45691 -13.30969 -12.94667 -12.79765 -12.66577 -12.28258 -12.11661 -12.01499 -11.72332 -11.31194 -11.09228 -10.77988 -10.43389 -9.40904 -8.74003 -8.05587 -6.20423 -0.16375 0.49589 1.45018 1.45694 1.46722 1.48570 1.54377 2.45394 2.72942 3.21471 3.30160 3.52436 3.73499 3.78965 4.10261 4.30101 4.41557 4.46217 4.68223 4.70538 4.75513 4.83892 4.97712 5.10132 5.24674 5.26545 5.43204 5.52450 5.65824 5.84987 5.99188 6.05586 6.12377 6.35624 6.61581 6.87702 7.47389 8.98515 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.029192 B = 0.006517 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.945492 B = 4295.739498 C = 4719.864797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.076 3.924 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.277 1.277 12 C -0.132 4.132 13 C -0.006 4.006 14 C -0.201 4.201 15 C 0.086 3.914 16 N -0.273 5.273 17 N -0.416 5.416 18 C 0.102 3.898 19 C 0.128 3.872 20 C -0.177 4.177 21 C 0.127 3.873 22 F -0.144 7.144 23 H 0.041 0.959 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.261 0.739 27 H 0.140 0.860 28 H 0.231 0.769 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -7.335 13.473 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 H 0.021 0.979 4 C -0.559 4.559 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.202 1.202 12 C -0.135 4.135 13 C -0.026 4.026 14 C -0.209 4.209 15 C -0.111 4.111 16 N -0.085 5.085 17 N -0.205 5.205 18 C -0.038 4.038 19 C 0.013 3.987 20 C -0.200 4.200 21 C 0.106 3.894 22 F -0.123 7.123 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.248 0.752 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.053 -7.906 14.503 17.008 hybrid contribution 0.115 0.897 -1.723 1.946 sum 4.168 -7.009 12.780 15.160 Atomic orbital electron populations 1.21642 0.96913 0.99744 0.99589 1.17605 0.93493 0.93980 0.89205 0.97904 1.21369 1.31222 1.12406 0.90896 0.92603 1.25715 0.95234 0.95656 1.01794 1.70017 1.37563 1.24024 1.24067 0.85667 0.78525 0.79094 0.78729 1.19004 1.21062 1.20221 1.19978 1.00165 0.95870 0.97447 1.20043 0.96291 0.92059 0.94212 1.20213 1.06455 0.95856 0.98410 1.25589 0.98122 0.95584 0.91812 1.76491 1.11420 1.03209 1.17372 1.48382 1.45500 1.05984 1.20668 1.22058 0.93924 1.03912 0.83897 1.18345 0.97716 0.91766 0.90851 1.19735 1.08137 0.92755 0.99408 1.17542 0.97993 0.78610 0.95288 1.91435 1.91092 1.35097 1.94661 0.94004 0.96017 0.92177 0.92936 0.84225 0.75243 0.90071 0.88267 0.88369 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.78 71.98 0.63 -5.23 16 2 C 0.08 3.87 2.45 -12.28 -0.03 3.84 16 3 H 0.00 0.16 7.09 -2.38 -0.02 0.14 16 4 C -0.52 -28.34 8.21 25.60 0.21 -28.13 16 5 H 0.06 2.98 7.59 -2.91 -0.02 2.96 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -52.80 11.32 21.44 0.24 -52.56 16 8 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C -0.13 -5.73 4.73 -20.07 -0.09 -5.82 16 13 C -0.01 -0.21 8.66 22.25 0.19 -0.02 16 14 C -0.20 -6.62 6.36 -20.24 -0.13 -6.75 16 15 C 0.09 2.27 12.28 86.93 1.07 3.34 16 16 N -0.27 -7.56 12.40 -53.07 -0.66 -8.22 16 17 N -0.42 -11.16 4.05 -361.05 -1.46 -12.62 16 18 C 0.10 1.69 11.40 127.77 1.46 3.15 16 19 C 0.13 4.04 6.87 39.20 0.27 4.31 16 20 C -0.18 -5.70 9.98 22.41 0.22 -5.48 16 21 C 0.13 5.07 7.23 22.40 0.16 5.24 16 22 F -0.14 -6.09 16.14 44.97 0.73 -5.37 16 23 H 0.04 1.86 7.35 -2.39 -0.02 1.84 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 26 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 27 H 0.14 5.09 7.51 -2.91 -0.02 5.07 16 28 H 0.23 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.30 8.13 -2.39 -0.02 1.29 16 32 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -65.32 279.60 6.42 -58.90 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.13 Total: 4.99 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 4.41 Total: -30.31 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.88 Total: -73.40 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.73 Total: -5.37 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -65.32 6.42 -58.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850307.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.575 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds