Wall clock time and date at job start Mon Mar 30 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38364 * 120.41738 * 2 1 4 4 C 1.38280 * 119.89464 * 180.02562 * 3 2 1 5 5 C 1.38328 * 120.54869 * 0.28186 * 4 3 2 6 6 C 1.38551 * 119.72569 * 359.93110 * 5 4 3 7 7 C 1.37553 * 119.49840 * 359.55123 * 6 5 4 8 8 S 1.77497 * 118.80713 * 181.34852 * 7 6 5 9 9 C 1.82060 * 101.33942 * 292.62737 * 8 7 6 10 10 C 1.51484 * 109.89519 * 80.80907 * 9 8 7 11 11 C 1.51163 * 116.27476 * 290.27366 * 10 9 8 12 12 C 1.51383 * 118.92666 * 179.47710 * 6 5 4 13 13 H 1.08996 * 109.59191 * 15.41949 * 12 6 5 14 14 C 1.50699 * 109.58881 * 135.71445 * 12 6 5 15 15 H 1.07999 * 120.00861 * 85.04728 * 14 12 6 16 16 C 1.37882 * 120.00084 * 265.04823 * 14 12 6 17 17 N 1.31510 * 120.00432 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 119.99645 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.46930 * 90.00107 * 18 16 14 20 20 H 1.48496 * 109.47186 * 330.00552 * 18 16 14 21 21 H 1.48496 * 109.47347 * 210.00211 * 18 16 14 22 22 H 1.08998 * 109.46649 * 89.99704 * 1 2 3 23 23 H 1.08997 * 109.47067 * 209.99864 * 1 2 3 24 24 H 1.08998 * 109.47066 * 329.99969 * 1 2 3 25 25 H 1.08001 * 120.05539 * 0.03146 * 3 2 1 26 26 H 1.07996 * 119.72883 * 180.30766 * 4 3 2 27 27 H 1.07992 * 120.13579 * 179.90863 * 5 4 3 28 28 H 1.09006 * 109.39910 * 200.93630 * 9 8 7 29 29 H 1.08997 * 109.40095 * 320.76215 * 9 8 7 30 30 H 1.09005 * 108.12314 * 52.05111 * 10 9 8 31 31 H 1.09007 * 108.11965 * 168.51240 * 10 9 8 32 32 H 1.08999 * 109.09458 * 311.09407 * 11 10 9 33 33 H 1.08997 * 109.08734 * 192.08787 * 11 10 9 34 34 H 0.97003 * 120.00198 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2076 1.1932 0.0000 4 6 3.5903 1.1806 -0.0005 5 6 4.2825 -0.0170 -0.0069 6 6 3.5846 -1.2139 -0.0114 7 6 2.2092 -1.1960 0.0000 8 16 1.3339 -2.7398 0.0306 9 6 1.7409 -3.4147 -1.6106 10 6 3.1144 -4.0528 -1.5794 11 6 4.2874 -3.1098 -1.4390 12 6 4.3602 -2.5138 -0.0305 13 1 5.4000 -2.3229 0.2347 14 6 3.7555 -3.4775 0.9577 15 1 2.9185 -4.0950 0.6670 16 6 4.2708 -3.5710 2.2332 17 7 3.7435 -4.4124 3.0955 18 14 5.7190 -2.5035 2.7360 19 1 5.2186 -1.2239 3.2995 20 1 6.5641 -2.2240 1.5474 21 1 6.5254 -3.2139 3.7607 22 1 -0.3632 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6753 2.1329 0.0005 26 1 4.1344 2.1135 0.0045 27 1 5.3624 -0.0191 -0.0088 28 1 0.9996 -4.1643 -1.8878 29 1 1.7337 -2.6094 -2.3451 30 1 3.1429 -4.7557 -0.7468 31 1 3.2450 -4.6214 -2.5002 32 1 4.1839 -2.3016 -2.1631 33 1 5.2091 -3.6544 -1.6437 34 1 4.1058 -4.4779 3.9929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259851004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:58 Heat of formation + Delta-G solvation = 27.509534 kcal Electronic energy + Delta-G solvation = -16545.259549 eV Core-core repulsion = 14148.088131 eV Total energy + Delta-G solvation = -2397.171419 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.98512 -36.04611 -32.48904 -32.07992 -30.84733 -28.48061 -26.41838 -25.56511 -23.03937 -21.67208 -20.60576 -18.84934 -17.10430 -16.54725 -15.08588 -14.76296 -14.47200 -14.08235 -13.66140 -13.42996 -13.28683 -12.71786 -12.47424 -12.30642 -12.25889 -11.72784 -11.62245 -11.16748 -10.94636 -10.86369 -10.52393 -10.44745 -10.13350 -9.82718 -9.39207 -9.27323 -8.80458 -8.46031 -8.09541 -7.83045 -6.21787 -5.76185 -3.82181 1.72881 2.03120 2.71815 3.33453 3.38535 3.42510 3.45981 4.37926 4.51261 5.24768 5.33427 5.42549 5.44341 5.66273 5.67946 5.73012 5.89522 5.97761 6.01610 6.05039 6.18729 6.30720 6.34815 6.40485 6.54752 6.66183 6.82079 6.86117 6.94168 7.03910 7.15152 7.21780 7.41117 7.60029 7.82937 8.64910 9.23520 9.67562 11.17772 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019105 B = 0.012700 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.270942 B = 2204.195072 C = 2720.539507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.052 4.052 3 C -0.154 4.154 4 C -0.107 4.107 5 C -0.152 4.152 6 C -0.011 4.011 7 C -0.091 4.091 8 S -0.115 6.115 9 C -0.090 4.090 10 C -0.124 4.124 11 C -0.093 4.093 12 C 0.023 3.977 13 H 0.054 0.946 14 C -0.491 4.491 15 H 0.120 0.880 16 C 0.076 3.924 17 N -0.895 5.895 18 Si 0.852 3.148 19 H -0.278 1.278 20 H -0.264 1.264 21 H -0.290 1.290 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 6.921 -8.640 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.055 4.055 3 C -0.174 4.174 4 C -0.126 4.126 5 C -0.172 4.172 6 C -0.015 4.015 7 C -0.202 4.202 8 S 0.123 5.877 9 C -0.238 4.238 10 C -0.163 4.163 11 C -0.131 4.131 12 C 0.004 3.996 13 H 0.072 0.928 14 C -0.529 4.529 15 H 0.137 0.863 16 C -0.125 4.125 17 N -0.533 5.533 18 Si 0.680 3.320 19 H -0.204 1.204 20 H -0.190 1.190 21 H -0.217 1.217 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.717 6.266 -7.630 10.550 hybrid contribution 1.836 1.477 -0.346 2.381 sum -1.881 7.743 -7.976 11.274 Atomic orbital electron populations 1.20812 0.91197 1.02803 1.02025 1.20008 0.95792 0.92128 0.97607 1.20806 0.94016 0.96739 1.05794 1.21053 0.94324 0.97502 0.99745 1.21255 0.99381 0.92352 1.04172 1.21110 0.93297 0.97022 0.90042 1.21080 0.95445 0.95681 1.08044 1.85443 1.61461 1.18725 1.22088 1.23216 1.00918 1.02381 0.97313 1.21112 0.92580 1.00279 1.02298 1.21076 0.97378 0.97491 0.97143 1.18894 0.96071 0.89811 0.94799 0.92793 1.21643 1.17155 1.19296 0.94800 0.86311 1.25001 0.96184 0.94688 0.96622 1.69865 1.41493 1.36559 1.05378 0.87213 0.84652 0.81659 0.78448 1.20397 1.18960 1.21661 0.91540 0.90179 0.92294 0.86797 0.87090 0.86883 0.88875 0.91452 0.88033 0.94119 0.94821 0.92451 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.62 36.01 0.35 -1.33 16 2 C -0.05 -0.95 5.90 -104.41 -0.62 -1.57 16 3 C -0.15 -2.59 9.74 -39.52 -0.38 -2.98 16 4 C -0.11 -1.85 10.02 -39.53 -0.40 -2.25 16 5 C -0.15 -2.99 9.66 -39.43 -0.38 -3.37 16 6 C -0.01 -0.24 4.48 -104.42 -0.47 -0.70 16 7 C -0.09 -1.92 5.51 -39.67 -0.22 -2.14 16 8 S -0.12 -2.41 16.33 -107.50 -1.76 -4.17 16 9 C -0.09 -1.59 6.18 36.39 0.22 -1.36 16 10 C -0.12 -2.29 4.97 -28.42 -0.14 -2.44 16 11 C -0.09 -1.82 5.50 -27.60 -0.15 -1.97 16 12 C 0.02 0.53 1.99 -92.53 -0.18 0.35 16 13 H 0.05 1.27 4.73 -51.93 -0.25 1.02 16 14 C -0.49 -12.86 6.10 -34.44 -0.21 -13.07 16 15 H 0.12 3.22 3.72 -35.44 -0.13 3.08 16 16 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 18 Si 0.85 21.42 27.58 -169.99 -4.69 16.73 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.26 -6.25 5.95 56.52 0.34 -5.91 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.08 1.29 6.79 -51.93 -0.35 0.93 16 24 H 0.06 0.77 8.09 -51.93 -0.42 0.34 16 25 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.11 2.08 7.97 -52.49 -0.42 1.66 16 28 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 29 H 0.07 1.12 8.12 -51.93 -0.42 0.69 16 30 H 0.10 2.17 5.55 -51.93 -0.29 1.88 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 272.90 15.07 4.11 4.11 Total: -1.00 -29.52 272.90 -8.65 -38.18 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.42 Total: 1.96 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: -2.68 Total: -30.78 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.04 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.69 Total: 16.73 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -1.76 Total: -4.17 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.52 -8.65 -38.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.687 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds