Wall clock time and date at job start Mon Mar 30 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38364 * 120.41738 * 2 1 4 4 C 1.38280 * 119.89464 * 180.02562 * 3 2 1 5 5 C 1.38328 * 120.54869 * 0.28186 * 4 3 2 6 6 C 1.38551 * 119.72569 * 359.93110 * 5 4 3 7 7 C 1.37553 * 119.49840 * 359.55123 * 6 5 4 8 8 S 1.77497 * 118.80713 * 181.34852 * 7 6 5 9 9 C 1.82060 * 101.33942 * 292.62737 * 8 7 6 10 10 C 1.51484 * 109.89519 * 80.80907 * 9 8 7 11 11 C 1.51163 * 116.27476 * 290.27366 * 10 9 8 12 12 C 1.51383 * 118.92666 * 179.47710 * 6 5 4 13 13 H 1.08996 * 109.59191 * 15.41949 * 12 6 5 14 14 C 1.50699 * 109.58881 * 135.71445 * 12 6 5 15 15 H 1.07999 * 120.00861 * 85.04728 * 14 12 6 16 16 C 1.37882 * 120.00084 * 265.04823 * 14 12 6 17 17 N 1.31510 * 120.00432 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 119.99645 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.46930 * 90.00107 * 18 16 14 20 20 H 1.48496 * 109.47186 * 330.00552 * 18 16 14 21 21 H 1.48496 * 109.47347 * 210.00211 * 18 16 14 22 22 H 1.08998 * 109.46649 * 89.99704 * 1 2 3 23 23 H 1.08997 * 109.47067 * 209.99864 * 1 2 3 24 24 H 1.08998 * 109.47066 * 329.99969 * 1 2 3 25 25 H 1.08001 * 120.05539 * 0.03146 * 3 2 1 26 26 H 1.07996 * 119.72883 * 180.30766 * 4 3 2 27 27 H 1.07992 * 120.13579 * 179.90863 * 5 4 3 28 28 H 1.09006 * 109.39910 * 200.93630 * 9 8 7 29 29 H 1.08997 * 109.40095 * 320.76215 * 9 8 7 30 30 H 1.09005 * 108.12314 * 52.05111 * 10 9 8 31 31 H 1.09007 * 108.11965 * 168.51240 * 10 9 8 32 32 H 1.08999 * 109.09458 * 311.09407 * 11 10 9 33 33 H 1.08997 * 109.08734 * 192.08787 * 11 10 9 34 34 H 0.97003 * 120.00198 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2076 1.1932 0.0000 4 6 3.5903 1.1806 -0.0005 5 6 4.2825 -0.0170 -0.0069 6 6 3.5846 -1.2139 -0.0114 7 6 2.2092 -1.1960 0.0000 8 16 1.3339 -2.7398 0.0306 9 6 1.7409 -3.4147 -1.6106 10 6 3.1144 -4.0528 -1.5794 11 6 4.2874 -3.1098 -1.4390 12 6 4.3602 -2.5138 -0.0305 13 1 5.4000 -2.3229 0.2347 14 6 3.7555 -3.4775 0.9577 15 1 2.9185 -4.0950 0.6670 16 6 4.2708 -3.5710 2.2332 17 7 3.7435 -4.4124 3.0955 18 14 5.7190 -2.5035 2.7360 19 1 5.2186 -1.2239 3.2995 20 1 6.5641 -2.2240 1.5474 21 1 6.5254 -3.2139 3.7607 22 1 -0.3632 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6753 2.1329 0.0005 26 1 4.1344 2.1135 0.0045 27 1 5.3624 -0.0191 -0.0088 28 1 0.9996 -4.1643 -1.8878 29 1 1.7337 -2.6094 -2.3451 30 1 3.1429 -4.7557 -0.7468 31 1 3.2450 -4.6214 -2.5002 32 1 4.1839 -2.3016 -2.1631 33 1 5.2091 -3.6544 -1.6437 34 1 4.1058 -4.4779 3.9929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259851004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:58 Heat of formation + Delta-G solvation = 11.905913 kcal Electronic energy + Delta-G solvation = -16545.936173 eV Core-core repulsion = 14148.088131 eV Total energy + Delta-G solvation = -2397.848043 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46080 -37.61724 -34.21155 -33.70952 -32.36655 -30.03760 -27.75832 -27.34112 -24.67998 -23.11613 -22.06894 -20.57950 -18.93059 -18.01423 -16.63301 -16.41020 -16.22655 -15.47835 -15.34033 -14.93173 -14.69046 -14.30370 -14.12486 -13.91716 -13.73173 -13.14504 -12.98107 -12.83213 -12.62552 -12.44348 -12.12209 -11.98361 -11.75100 -11.63985 -11.06391 -10.92669 -10.55192 -10.52921 -9.54110 -9.30723 -8.17357 -7.60305 -5.92139 0.30558 0.58366 1.20993 1.31851 1.35342 1.39567 1.97847 2.45061 2.91849 3.27983 3.96856 4.05437 4.10341 4.19684 4.27474 4.41905 4.47275 4.62397 4.63673 4.75519 4.85300 4.87608 4.91616 4.98956 5.13040 5.26317 5.29105 5.39058 5.43936 5.55211 5.62972 5.71659 5.80153 5.91133 6.18181 6.60624 7.15354 7.57439 9.08836 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019105 B = 0.012700 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.270942 B = 2204.195072 C = 2720.539507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.062 4.062 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.169 4.169 6 C -0.039 4.039 7 C -0.109 4.109 8 S -0.177 6.177 9 C -0.074 4.074 10 C -0.121 4.121 11 C -0.092 4.092 12 C 0.019 3.981 13 H 0.044 0.956 14 C -0.468 4.468 15 H 0.106 0.894 16 C 0.015 3.985 17 N -0.947 5.947 18 Si 0.898 3.102 19 H -0.288 1.288 20 H -0.241 1.241 21 H -0.297 1.297 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 9.449 -10.747 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.066 4.066 3 C -0.166 4.166 4 C -0.121 4.121 5 C -0.189 4.189 6 C -0.043 4.043 7 C -0.220 4.220 8 S 0.060 5.940 9 C -0.222 4.222 10 C -0.160 4.160 11 C -0.129 4.129 12 C -0.001 4.001 13 H 0.062 0.938 14 C -0.506 4.506 15 H 0.123 0.877 16 C -0.180 4.180 17 N -0.590 5.590 18 Si 0.726 3.274 19 H -0.214 1.214 20 H -0.165 1.165 21 H -0.223 1.223 22 H 0.104 0.896 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.170 0.830 26 H 0.166 0.834 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.757 8.815 -9.774 13.688 hybrid contribution 1.764 0.764 0.178 1.930 sum -1.994 9.579 -9.596 13.704 Atomic orbital electron populations 1.20829 0.89125 1.03154 1.03327 1.20452 0.97526 0.91775 0.96798 1.21287 0.94128 0.97640 1.03545 1.21471 0.94828 0.98012 0.97783 1.21455 1.00006 0.92661 1.04759 1.20961 0.93742 0.96943 0.92658 1.21226 0.95345 0.96007 1.09444 1.85623 1.62285 1.20447 1.25623 1.23242 1.00857 1.03087 0.94980 1.21032 0.92876 0.99634 1.02449 1.21051 0.98324 0.98141 0.95418 1.18870 0.95284 0.90213 0.95690 0.93790 1.21972 1.15358 1.18493 0.94804 0.87701 1.25621 0.98827 0.96276 0.97279 1.70005 1.43810 1.39496 1.05706 0.86436 0.82695 0.79625 0.78601 1.21420 1.16501 1.22344 0.89647 0.91882 0.89860 0.82951 0.83422 0.86166 0.86616 0.89941 0.91494 0.90755 0.93253 0.91589 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.96 9.62 71.24 0.69 -2.27 16 2 C -0.06 -2.12 5.90 -19.73 -0.12 -2.24 16 3 C -0.15 -4.32 9.74 22.31 0.22 -4.10 16 4 C -0.10 -3.12 10.02 22.30 0.22 -2.90 16 5 C -0.17 -6.26 9.66 22.37 0.22 -6.04 16 6 C -0.04 -1.67 4.48 -19.73 -0.09 -1.76 16 7 C -0.11 -4.47 5.51 22.21 0.12 -4.35 16 8 S -0.18 -7.45 16.33 -56.49 -0.92 -8.37 16 9 C -0.07 -2.48 6.18 71.49 0.44 -2.04 16 10 C -0.12 -4.31 4.97 29.50 0.15 -4.16 16 11 C -0.09 -3.44 5.50 30.03 0.17 -3.27 16 12 C 0.02 0.84 1.99 -12.03 -0.02 0.81 16 13 H 0.04 2.04 4.73 -2.39 -0.01 2.02 16 14 C -0.47 -24.99 6.10 25.60 0.16 -24.84 16 15 H 0.11 5.87 3.72 -13.75 -0.05 5.82 16 16 C 0.02 0.90 5.47 84.66 0.46 1.36 16 17 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 18 Si 0.90 45.01 27.58 68.60 1.89 46.90 16 19 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 20 H -0.24 -10.97 5.95 99.48 0.59 -10.38 16 21 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.06 1.96 6.79 -2.39 -0.02 1.95 16 24 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 25 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 26 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 27 H 0.12 4.15 7.97 -2.91 -0.02 4.13 16 28 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 29 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 30 H 0.07 2.88 5.55 -2.38 -0.01 2.87 16 31 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.05 1.69 7.77 -2.39 -0.02 1.67 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -66.06 272.90 4.82 -61.25 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.94 Total: 15.10 kcal Atomic # 6 Polarization: -58.41 SS G_CDS: 2.61 Total: -55.80 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.30 Total: -59.08 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.89 Total: 46.90 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -0.92 Total: -8.37 kcal Total: -66.06 4.82 -61.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.156 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds