Wall clock time and date at job start Mon Mar 30 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35197 * 126.64084 * 2 1 4 4 C 1.42420 * 103.92805 * 179.97438 * 3 2 1 5 5 C 1.47965 * 126.95376 * 179.97438 * 4 3 2 6 6 N 1.31159 * 125.71740 * 0.02562 * 5 4 3 7 7 C 1.34041 * 108.66597 * 179.97438 * 6 5 4 8 8 C 1.34669 * 107.82366 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.37219 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47318 * 89.99551 * 9 8 7 11 11 C 1.50695 * 109.47322 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00065 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00406 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99793 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00190 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47185 * 59.99930 * 15 13 11 17 17 H 1.48501 * 109.47289 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47126 * 299.99599 * 15 13 11 19 19 O 1.34422 * 125.71178 * 179.71575 * 5 4 3 20 20 N 1.31144 * 106.08361 * 359.97438 * 4 3 2 21 21 O 1.20902 * 111.39198 * 0.02562 * 20 4 3 22 22 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46839 * 299.99436 * 1 2 3 24 24 H 1.08997 * 109.47242 * 60.00109 * 1 2 3 25 25 H 1.08000 * 128.03185 * 359.97438 * 3 2 1 26 26 H 1.07995 * 126.08784 * 180.02562 * 7 6 5 27 27 H 1.08999 * 109.46610 * 210.00383 * 9 8 7 28 28 H 1.09008 * 109.46784 * 329.99717 * 9 8 7 29 29 H 1.08996 * 109.47885 * 300.00531 * 10 9 8 30 30 H 1.09008 * 109.47058 * 60.00334 * 10 9 8 31 31 H 0.97001 * 120.00113 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3139 1.0848 0.0000 4 6 3.6276 0.5349 0.0006 5 6 4.9047 1.2822 0.0003 6 7 5.0278 2.5880 0.0000 7 6 6.3323 2.8959 0.0004 8 6 7.0281 1.7429 0.0016 9 6 8.5287 1.6046 0.0030 10 6 9.0353 1.5586 1.4459 11 6 10.5358 1.4197 1.4473 12 1 11.0744 1.3696 0.5126 13 6 11.2213 1.3565 2.6420 14 7 10.5656 1.4180 3.7804 15 14 13.0814 1.1850 2.6437 16 1 13.6863 2.3469 1.9441 17 1 13.5731 1.1403 4.0442 18 1 13.4636 -0.0680 1.9442 19 8 6.1331 0.7364 0.0064 20 7 3.4762 -0.7678 0.0015 21 8 2.3071 -1.0758 0.0010 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 2.0284 2.1264 -0.0004 26 1 6.7509 3.8915 0.0006 27 1 8.8092 0.6847 -0.5101 28 1 8.9726 2.4572 -0.5109 29 1 8.7548 2.4784 1.9591 30 1 8.5914 0.7060 1.9599 31 1 11.0477 1.3732 4.6209 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:26 Heat of formation + Delta-G solvation = 71.310192 kcal Electronic energy + Delta-G solvation = -16696.085517 eV Core-core repulsion = 13754.520222 eV Total energy + Delta-G solvation = -2941.565294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.15376 -43.00085 -34.95297 -34.46120 -34.07143 -33.54030 -31.92125 -28.74647 -28.05386 -25.65496 -24.06468 -22.63053 -22.03332 -20.81008 -20.14842 -17.93105 -17.55026 -16.82320 -16.46953 -16.12423 -14.92541 -14.53189 -14.04877 -13.94793 -13.76425 -13.59861 -13.25674 -12.71197 -12.61508 -12.30025 -11.56519 -11.51051 -11.29531 -11.00350 -10.84495 -10.64690 -10.48815 -10.04662 -9.80945 -9.60025 -9.28774 -8.44438 -8.13633 -6.08593 -4.13568 0.93293 1.42047 2.33345 2.60292 2.89410 3.13781 3.29444 3.34167 3.36169 3.55622 4.30791 4.39892 4.72308 4.87869 5.00777 5.06453 5.18044 5.27245 5.33023 5.38031 5.51960 5.71550 5.80975 6.01020 6.29146 6.40973 6.48273 6.71976 7.51760 7.59053 7.84158 7.87492 8.02777 8.24276 8.91998 9.51224 11.02474 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.003811 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.134152 B = 7345.636548 C = 7576.120817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.036 4.036 3 C -0.189 4.189 4 C 0.107 3.893 5 C 0.215 3.785 6 N -0.441 5.441 7 C -0.060 4.060 8 C 0.016 3.984 9 C -0.039 4.039 10 C 0.027 3.973 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 O -0.183 6.183 20 N -0.338 5.338 21 O 0.118 5.882 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.183 0.817 26 H 0.191 0.809 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.024 0.976 30 H 0.020 0.980 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.874 -0.243 -8.200 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.050 4.050 5 C 0.012 3.988 6 N -0.173 5.173 7 C -0.201 4.201 8 C -0.038 4.038 9 C -0.077 4.077 10 C -0.010 4.010 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 O -0.068 6.068 20 N -0.039 5.039 21 O 0.045 5.955 22 H 0.103 0.897 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.200 0.800 26 H 0.208 0.792 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.486 -0.948 -7.995 20.163 hybrid contribution 1.395 0.297 0.217 1.442 sum -17.092 -0.650 -7.777 18.789 Atomic orbital electron populations 1.20358 0.83403 1.04854 1.04345 1.24446 0.96576 0.85545 1.03323 1.22293 0.88930 1.01656 1.08253 1.19838 0.90135 0.88919 1.06075 1.21582 0.82652 0.86888 1.07678 1.70363 1.20637 1.10640 1.15700 1.23058 0.87393 1.00175 1.09454 1.24662 0.94285 0.85229 0.99671 1.20671 0.80189 1.03387 1.03419 1.19155 0.96094 0.98178 0.87618 1.21089 0.91429 1.51422 0.92648 0.92252 1.25028 0.98752 0.94988 0.95529 1.69962 1.35909 1.49752 0.97404 0.86575 0.85118 0.78773 0.77069 1.20078 1.21206 1.20120 1.84520 1.15532 1.37871 1.68883 1.74366 0.96698 1.14796 1.18049 1.84844 1.10913 1.33158 1.66600 0.89675 0.88922 0.88959 0.79995 0.79240 0.90645 0.88889 0.95768 0.96140 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.44 36.01 0.38 0.06 16 2 C -0.04 -0.35 7.47 -35.39 -0.26 -0.61 16 3 C -0.19 -2.24 11.07 -39.06 -0.43 -2.67 16 4 C 0.11 1.74 7.28 -82.57 -0.60 1.14 16 5 C 0.22 4.09 8.21 -13.85 -0.11 3.97 16 6 N -0.44 -8.13 11.31 -11.70 -0.13 -8.27 16 7 C -0.06 -1.08 11.79 -17.85 -0.21 -1.29 16 8 C 0.02 0.33 6.64 -35.57 -0.24 0.09 16 9 C -0.04 -0.80 5.70 -27.89 -0.16 -0.95 16 10 C 0.03 0.68 4.95 -27.89 -0.14 0.55 16 11 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 15 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 O -0.18 -3.84 10.80 4.35 0.05 -3.79 16 20 N -0.34 -5.52 12.13 33.28 0.40 -5.12 16 21 O 0.12 1.51 11.18 17.09 0.19 1.70 16 22 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.18 1.76 8.06 -52.49 -0.42 1.33 16 26 H 0.19 2.84 8.06 -52.49 -0.42 2.42 16 27 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 29 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 286.84 15.07 4.32 4.32 Total: -1.00 -33.01 286.84 -4.99 -37.99 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -3.35 Total: -4.12 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.19 Total: -13.05 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 1.01 Total: -39.39 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: 0.24 Total: -2.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.01 -4.99 -37.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.305 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds