Wall clock time and date at job start Mon Mar 30 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35197 * 126.64084 * 2 1 4 4 C 1.42420 * 103.92805 * 179.97438 * 3 2 1 5 5 C 1.47965 * 126.95376 * 179.97438 * 4 3 2 6 6 N 1.31159 * 125.71740 * 0.02562 * 5 4 3 7 7 C 1.34041 * 108.66597 * 179.97438 * 6 5 4 8 8 C 1.34669 * 107.82366 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.37219 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47318 * 89.99551 * 9 8 7 11 11 C 1.50695 * 109.47322 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00065 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00406 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99793 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00190 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47185 * 59.99930 * 15 13 11 17 17 H 1.48501 * 109.47289 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47126 * 299.99599 * 15 13 11 19 19 O 1.34422 * 125.71178 * 179.71575 * 5 4 3 20 20 N 1.31144 * 106.08361 * 359.97438 * 4 3 2 21 21 O 1.20902 * 111.39198 * 0.02562 * 20 4 3 22 22 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46839 * 299.99436 * 1 2 3 24 24 H 1.08997 * 109.47242 * 60.00109 * 1 2 3 25 25 H 1.08000 * 128.03185 * 359.97438 * 3 2 1 26 26 H 1.07995 * 126.08784 * 180.02562 * 7 6 5 27 27 H 1.08999 * 109.46610 * 210.00383 * 9 8 7 28 28 H 1.09008 * 109.46784 * 329.99717 * 9 8 7 29 29 H 1.08996 * 109.47885 * 300.00531 * 10 9 8 30 30 H 1.09008 * 109.47058 * 60.00334 * 10 9 8 31 31 H 0.97001 * 120.00113 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3139 1.0848 0.0000 4 6 3.6276 0.5349 0.0006 5 6 4.9047 1.2822 0.0003 6 7 5.0278 2.5880 0.0000 7 6 6.3323 2.8959 0.0004 8 6 7.0281 1.7429 0.0016 9 6 8.5287 1.6046 0.0030 10 6 9.0353 1.5586 1.4459 11 6 10.5358 1.4197 1.4473 12 1 11.0744 1.3696 0.5126 13 6 11.2213 1.3565 2.6420 14 7 10.5656 1.4180 3.7804 15 14 13.0814 1.1850 2.6437 16 1 13.6863 2.3469 1.9441 17 1 13.5731 1.1403 4.0442 18 1 13.4636 -0.0680 1.9442 19 8 6.1331 0.7364 0.0064 20 7 3.4762 -0.7678 0.0015 21 8 2.3071 -1.0758 0.0010 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 2.0284 2.1264 -0.0004 26 1 6.7509 3.8915 0.0006 27 1 8.8092 0.6847 -0.5101 28 1 8.9726 2.4572 -0.5109 29 1 8.7548 2.4784 1.9591 30 1 8.5914 0.7060 1.9599 31 1 11.0477 1.3732 4.6209 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:25 Heat of formation + Delta-G solvation = 48.124052 kcal Electronic energy + Delta-G solvation = -16697.090943 eV Core-core repulsion = 13754.520222 eV Total energy + Delta-G solvation = -2942.570721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.23033 -44.48726 -36.39340 -36.10302 -35.43166 -34.47666 -33.80007 -30.41575 -28.73294 -27.41071 -25.41411 -24.17413 -23.41161 -22.42562 -21.50500 -19.03217 -18.76355 -18.47787 -17.89254 -17.75713 -16.53375 -16.26215 -15.48866 -15.18624 -14.72427 -14.50859 -14.44497 -14.06586 -13.94396 -13.36519 -13.32831 -12.85947 -12.82977 -12.64139 -12.43583 -12.18078 -12.04183 -11.80315 -11.66437 -11.35669 -10.60909 -10.45841 -9.61077 -8.24629 -6.37998 -0.35235 0.49142 1.00771 1.27112 1.41120 1.44344 1.52236 1.75599 2.05354 2.31237 2.39716 3.09397 3.35818 3.73848 3.78846 3.87421 3.99499 4.20675 4.35972 4.49690 4.57134 4.78054 4.82037 4.83397 4.89119 4.94525 5.11607 5.28235 5.38533 5.51615 5.73122 6.09946 6.39833 6.77806 7.01748 7.32369 8.87385 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.003811 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.134152 B = 7345.636548 C = 7576.120817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.010 4.010 3 C -0.195 4.195 4 C 0.067 3.933 5 C 0.215 3.785 6 N -0.446 5.446 7 C -0.046 4.046 8 C -0.016 4.016 9 C -0.023 4.023 10 C 0.032 3.968 11 C -0.545 4.545 12 H 0.074 0.926 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.260 1.260 17 H -0.286 1.286 18 H -0.267 1.267 19 O -0.209 6.209 20 N -0.374 5.374 21 O 0.126 5.874 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.203 0.797 26 H 0.221 0.779 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.003 0.997 30 H -0.021 1.021 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.986 0.306 -9.255 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.218 4.218 4 C -0.088 4.088 5 C 0.012 3.988 6 N -0.179 5.179 7 C -0.186 4.186 8 C -0.070 4.070 9 C -0.060 4.060 10 C -0.005 4.005 11 C -0.582 4.582 12 H 0.092 0.908 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.796 3.204 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.192 1.192 19 O -0.095 6.095 20 N -0.074 5.074 21 O 0.050 5.950 22 H 0.119 0.881 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.220 0.780 26 H 0.237 0.763 27 H 0.095 0.905 28 H 0.139 0.861 29 H 0.022 0.978 30 H -0.002 1.002 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.580 -0.382 -9.072 21.583 hybrid contribution 1.509 0.077 0.549 1.608 sum -18.071 -0.305 -8.523 19.982 Atomic orbital electron populations 1.20716 0.79059 1.06649 1.06374 1.25389 0.98360 0.83694 0.99843 1.22593 0.87084 1.03275 1.08822 1.20171 0.90596 0.89558 1.08474 1.22311 0.82918 0.87445 1.06125 1.70412 1.20626 1.10321 1.16527 1.23568 0.87150 1.00873 1.07034 1.24570 0.94090 0.85758 1.02592 1.20385 0.80964 1.04762 0.99882 1.18977 0.95592 0.95268 0.90649 1.21585 0.92501 1.50787 0.93358 0.90775 1.26058 1.04322 0.94491 0.95078 1.70117 1.38137 1.51073 0.98176 0.85396 0.78453 0.79411 0.77171 1.18460 1.21149 1.19196 1.84491 1.16597 1.38941 1.69456 1.74362 0.98529 1.15240 1.19304 1.84796 1.10294 1.34209 1.65654 0.88056 0.86852 0.86561 0.77951 0.76265 0.90498 0.86064 0.97828 1.00234 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.44 71.24 0.74 0.41 16 2 C -0.01 -0.16 7.47 24.98 0.19 0.02 16 3 C -0.20 -4.35 11.07 22.61 0.25 -4.10 16 4 C 0.07 2.20 7.28 42.87 0.31 2.51 16 5 C 0.22 8.36 8.21 87.37 0.72 9.07 16 6 N -0.45 -16.42 11.31 -305.02 -3.45 -19.87 16 7 C -0.05 -1.64 11.79 83.54 0.99 -0.66 16 8 C -0.02 -0.66 6.64 24.87 0.17 -0.49 16 9 C -0.02 -0.93 5.70 29.85 0.17 -0.76 16 10 C 0.03 1.72 4.95 29.84 0.15 1.87 16 11 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 12 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 13 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 14 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 15 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 O -0.21 -9.10 10.80 -7.36 -0.08 -9.18 16 20 N -0.37 -12.40 12.13 -49.49 -0.60 -13.00 16 21 O 0.13 3.10 11.18 71.33 0.80 3.89 16 22 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 23 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 24 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.20 3.48 8.06 -2.91 -0.02 3.45 16 26 H 0.22 6.22 8.06 -2.91 -0.02 6.20 16 27 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.12 4.23 8.14 -2.38 -0.02 4.21 16 29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 30 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -74.53 286.84 4.50 -70.03 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.14 Total: 1.49 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.37 Total: -21.90 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -3.76 Total: -90.10 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: 0.72 Total: -5.28 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.53 4.50 -70.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.150 kcal (2) G-P(sol) polarization free energy of solvation -74.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds