Wall clock time and date at job start Mon Mar 30 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34731 * 126.06507 * 2 1 4 4 O 1.34695 * 107.28771 * 179.71206 * 3 2 1 5 5 C 1.34547 * 107.67144 * 0.42191 * 4 3 2 6 6 C 1.47191 * 125.74023 * 179.83696 * 5 4 3 7 7 N 1.31420 * 125.73985 * 179.66436 * 6 5 4 8 8 C 1.33950 * 108.65069 * 179.77689 * 7 6 5 9 9 C 1.50703 * 126.06784 * 180.25160 * 8 7 6 10 10 C 1.34723 * 107.87487 * 0.39597 * 8 7 6 11 11 C 1.50698 * 126.36043 * 179.87431 * 10 8 7 12 12 C 1.50706 * 109.47294 * 89.70982 * 11 10 8 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47288 * 59.99994 * 16 14 12 18 18 H 1.48503 * 109.47086 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46819 * 299.99648 * 16 14 12 20 20 O 1.34536 * 125.74373 * 359.69211 * 6 5 4 21 21 N 1.31413 * 108.51302 * 359.56780 * 5 4 3 22 22 H 1.08997 * 109.47233 * 270.00722 * 1 2 3 23 23 H 1.09001 * 109.46378 * 30.00534 * 1 2 3 24 24 H 1.09000 * 109.46894 * 149.99961 * 1 2 3 25 25 H 1.07996 * 126.34965 * 359.97438 * 3 2 1 26 26 H 1.09001 * 109.46858 * 270.17713 * 9 8 7 27 27 H 1.09001 * 109.46918 * 30.16985 * 9 8 7 28 28 H 1.08996 * 109.47364 * 150.16923 * 9 8 7 29 29 H 1.09001 * 109.46665 * 329.71364 * 11 10 8 30 30 H 1.09000 * 109.47722 * 209.71695 * 11 10 8 31 31 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3002 1.0891 0.0000 4 8 3.5754 0.6555 0.0065 5 6 3.5495 -0.6897 0.0009 6 6 4.7274 -1.5723 0.0015 7 7 4.7021 -2.8863 0.0023 8 6 5.9627 -3.3390 -0.0022 9 6 6.3860 -4.7854 -0.0084 10 6 6.7853 -2.2721 0.0029 11 6 8.2919 -2.3055 0.0031 12 6 8.7944 -2.3173 -1.4176 13 1 8.0928 -2.3017 -2.2386 14 6 10.1496 -2.3480 -1.6694 15 7 11.0038 -2.3675 -0.6696 16 14 10.7724 -2.3619 -3.4304 17 1 10.3052 -1.1384 -4.1304 18 1 12.2570 -2.3949 -3.4302 19 1 10.2501 -3.5628 -4.1307 20 8 6.0111 -1.1697 0.0019 21 7 2.2956 -1.0828 0.0007 22 1 -0.3633 0.0001 1.0276 23 1 -0.3632 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.9739 2.1186 -0.0004 26 1 6.4874 -5.1386 1.0178 27 1 5.6341 -5.3817 -0.5253 28 1 7.3424 -4.8819 -0.5222 29 1 8.6353 -3.2032 0.5174 30 1 8.6749 -1.4237 0.5167 31 1 11.9573 -2.3888 -0.8467 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259919866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:36 Heat of formation + Delta-G solvation = 13.061491 kcal Electronic energy + Delta-G solvation = -17084.302143 eV Core-core repulsion = 14140.210996 eV Total energy + Delta-G solvation = -2944.091147 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.70155 -44.31542 -36.66261 -36.24981 -35.77520 -33.97732 -32.44463 -30.40671 -29.06119 -27.55038 -25.95244 -23.97140 -22.89622 -22.51716 -21.38932 -19.00993 -18.84631 -18.21370 -17.51663 -17.33949 -16.72789 -16.27702 -15.60580 -14.85859 -14.41006 -14.29700 -14.19821 -14.15130 -13.99431 -13.48896 -13.08128 -13.07709 -12.87106 -12.66571 -12.54407 -12.20542 -12.05307 -11.81489 -11.74326 -11.62015 -10.67738 -10.40515 -9.22466 -8.29076 -6.44439 -0.52592 0.65843 0.88289 1.28548 1.42144 1.42858 1.47816 1.52621 1.77366 2.37448 2.85836 3.03551 3.48737 3.66045 3.81992 3.87666 4.19721 4.47794 4.58165 4.68976 4.76823 4.80615 4.83100 4.85430 4.90204 4.98089 5.10451 5.30228 5.34102 5.38869 5.60007 5.93102 6.31977 6.56416 6.61811 7.24740 8.79449 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.033752 B = 0.004954 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.388386 B = 5650.148183 C = 6029.169511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.032 4.032 3 C -0.036 4.036 4 O -0.200 6.200 5 C 0.243 3.757 6 C 0.207 3.793 7 N -0.424 5.424 8 C -0.038 4.038 9 C -0.059 4.059 10 C 0.019 3.981 11 C 0.102 3.898 12 C -0.543 4.543 13 H 0.051 0.949 14 C 0.021 3.979 15 N -0.918 5.918 16 Si 0.966 3.034 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.264 1.264 20 O -0.201 6.201 21 N -0.444 5.444 22 H 0.091 0.909 23 H 0.112 0.888 24 H 0.070 0.930 25 H 0.280 0.720 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.660 5.122 1.315 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.155 4.155 3 C -0.106 4.106 4 O -0.084 6.084 5 C 0.041 3.959 6 C 0.005 3.995 7 N -0.158 5.158 8 C -0.161 4.161 9 C -0.116 4.116 10 C -0.035 4.035 11 C 0.065 3.935 12 C -0.581 4.581 13 H 0.070 0.930 14 C -0.179 4.179 15 N -0.556 5.556 16 Si 0.790 3.210 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.189 1.189 20 O -0.087 6.087 21 N -0.179 5.179 22 H 0.109 0.891 23 H 0.131 0.869 24 H 0.089 0.911 25 H 0.295 0.705 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.112 4.245 1.374 17.684 hybrid contribution 1.502 1.238 -0.662 2.056 sum -15.610 5.483 0.713 16.560 Atomic orbital electron populations 1.20315 0.82520 1.05016 1.04444 1.22773 1.00388 0.86831 1.05537 1.26274 0.77625 1.03271 1.03461 1.84593 1.33149 1.21611 1.69001 1.20427 0.89157 0.78301 1.07989 1.20851 0.80441 0.88146 1.10047 1.70407 1.24088 1.06243 1.15100 1.22041 0.86219 0.99495 1.08354 1.20167 1.02168 0.85378 1.03917 1.24787 0.96348 0.82652 0.99707 1.17874 0.78180 0.99095 0.98314 1.21099 0.92268 1.53507 0.91226 0.93034 1.25755 0.96468 0.93773 1.01940 1.70014 1.03047 1.49524 1.33002 0.85476 0.77399 0.79105 0.78988 1.19963 1.19963 1.18915 1.84493 1.17007 1.37295 1.69887 1.70549 0.98589 1.32883 1.15842 0.89081 0.86922 0.91065 0.70469 0.89202 0.89600 0.90083 0.91862 0.96088 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.43 71.24 0.74 -0.11 16 2 C -0.03 -0.75 7.10 41.43 0.29 -0.46 16 3 C -0.04 -0.71 12.09 67.01 0.81 0.10 16 4 O -0.20 -6.32 10.80 -8.74 -0.09 -6.41 16 5 C 0.24 9.19 8.22 87.11 0.72 9.91 16 6 C 0.21 9.12 8.22 87.11 0.72 9.83 16 7 N -0.42 -18.77 11.32 -293.44 -3.32 -22.09 16 8 C -0.04 -1.67 7.09 41.43 0.29 -1.37 16 9 C -0.06 -2.05 10.04 71.24 0.72 -1.34 16 10 C 0.02 0.92 6.58 24.88 0.16 1.09 16 11 C 0.10 5.29 5.13 29.10 0.15 5.44 16 12 C -0.54 -30.00 9.09 25.60 0.23 -29.77 16 13 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 14 C 0.02 1.14 5.46 84.65 0.46 1.61 16 15 N -0.92 -51.76 13.29 21.45 0.28 -51.47 16 16 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 O -0.20 -9.61 10.80 -8.74 -0.09 -9.70 16 21 N -0.44 -15.21 11.32 -293.42 -3.32 -18.54 16 22 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.28 1.84 8.06 -2.91 -0.02 1.81 16 26 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.08 2.93 7.79 -2.39 -0.02 2.91 16 29 H 0.06 3.22 7.80 -2.39 -0.02 3.20 16 30 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -69.91 286.38 1.92 -67.99 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.15 Total: 0.75 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.30 Total: -5.08 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -6.36 Total: -92.10 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.19 Total: -16.12 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -69.91 1.92 -67.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.047 kcal (2) G-P(sol) polarization free energy of solvation -69.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds