Wall clock time and date at job start Mon Mar 30 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47204 * 2 1 4 4 C 1.50695 * 109.47049 * 120.00002 * 2 1 3 5 5 H 1.08004 * 120.00060 * 119.99616 * 4 2 1 6 6 C 1.37878 * 120.00465 * 300.00322 * 4 2 1 7 7 N 1.31517 * 119.99653 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00586 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47640 * 89.99481 * 8 6 4 10 10 H 1.48498 * 109.47079 * 209.99739 * 8 6 4 11 11 H 1.48504 * 109.46775 * 329.99803 * 8 6 4 12 12 C 1.50697 * 109.47166 * 240.00244 * 2 1 3 13 13 N 1.30122 * 124.95222 * 300.02458 * 12 2 1 14 14 C 1.35780 * 109.65538 * 179.73987 * 13 12 2 15 15 C 1.39809 * 133.57308 * 179.54352 * 14 13 12 16 16 C 1.36586 * 119.92651 * 180.42998 * 15 14 13 17 17 C 1.38782 * 120.68963 * 0.25941 * 16 15 14 18 18 C 1.38046 * 120.41828 * 359.97438 * 17 16 15 19 19 F 1.35102 * 120.17109 * 180.02562 * 18 17 16 20 20 C 1.39026 * 119.65215 * 0.02562 * 18 17 16 21 21 N 1.36001 * 124.95496 * 119.99953 * 12 2 1 22 22 C 1.46489 * 126.35898 * 0.02562 * 21 12 2 23 23 H 1.08997 * 109.46936 * 59.99955 * 1 2 3 24 24 H 1.08995 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47059 * 300.00253 * 1 2 3 26 26 H 0.97001 * 120.00068 * 180.02562 * 7 6 4 27 27 H 1.08002 * 120.03950 * 0.71618 * 15 14 13 28 28 H 1.07997 * 119.65292 * 180.27788 * 16 15 14 29 29 H 1.08000 * 119.78802 * 179.97438 * 17 16 15 30 30 H 1.09006 * 109.47231 * 269.99730 * 22 21 12 31 31 H 1.08996 * 109.47465 * 29.99143 * 22 21 12 32 32 H 1.08998 * 109.48038 * 150.00072 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5442 4.4120 10 1 1.3444 -0.9490 5.1123 11 1 2.4880 -2.5654 3.7122 12 6 2.0323 -0.7103 -1.2305 13 7 1.7777 -1.9504 -1.5315 14 6 2.3785 -2.2676 -2.7071 15 6 2.4410 -3.4355 -3.4731 16 6 3.1514 -3.4481 -4.6396 17 6 3.8200 -2.3123 -5.0741 18 6 3.7767 -1.1490 -4.3322 19 9 4.4290 -0.0460 -4.7601 20 6 3.0583 -1.1184 -3.1423 21 7 2.8175 -0.1487 -2.1884 22 6 3.3157 1.2288 -2.2055 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7094 1.1617 3.4844 27 1 1.9243 -4.3254 -3.1452 28 1 3.1929 -4.3514 -5.2301 29 1 4.3777 -2.3386 -5.9986 30 1 2.6001 1.8675 -2.7234 31 1 3.4434 1.5817 -1.1822 32 1 4.2740 1.2624 -2.7237 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259922516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:14 Heat of formation + Delta-G solvation = 19.281082 kcal Electronic energy + Delta-G solvation = -17742.756272 eV Core-core repulsion = 14811.307616 eV Total energy + Delta-G solvation = -2931.448656 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.72539 -41.62546 -37.13593 -34.29055 -33.53103 -31.03083 -29.83848 -28.30222 -26.46520 -25.27295 -23.23928 -22.10473 -21.09252 -19.13109 -17.47326 -17.01787 -16.29268 -15.82806 -15.76992 -15.14318 -14.77344 -14.72286 -14.21034 -13.16372 -12.97492 -12.89946 -12.74085 -12.28769 -11.77432 -11.60757 -11.49694 -11.25002 -10.98137 -10.74910 -10.54489 -10.25571 -9.99355 -9.81159 -9.40180 -9.15355 -8.50656 -7.89875 -7.62658 -6.14763 -4.20764 1.17191 1.69581 3.03691 3.26298 3.27487 3.33455 3.41117 4.13832 4.37034 4.43064 4.66618 4.95556 5.08610 5.16184 5.18433 5.46989 5.50658 5.70891 5.75546 5.82429 6.04857 6.24698 6.56929 6.58382 6.72834 6.83123 6.90575 6.96581 7.14808 7.44068 7.61078 7.74224 7.93295 8.14332 8.61366 8.80748 9.43997 10.91654 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031232 B = 0.006442 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.309667 B = 4345.397070 C = 4662.016043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.111 3.889 3 H 0.046 0.954 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.349 3.651 13 N -0.497 5.497 14 C 0.081 3.919 15 C -0.080 4.080 16 C -0.111 4.111 17 C -0.158 4.158 18 C 0.108 3.892 19 F -0.147 7.147 20 C -0.007 4.007 21 N -0.493 5.493 22 C 0.078 3.922 23 H 0.008 0.992 24 H 0.044 0.956 25 H 0.094 0.906 26 H 0.264 0.736 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -1.888 -11.783 12.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.064 0.936 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.196 1.196 12 C 0.086 3.914 13 N -0.215 5.215 14 C -0.040 4.040 15 C -0.100 4.100 16 C -0.132 4.132 17 C -0.179 4.179 18 C 0.086 3.914 19 F -0.126 7.126 20 C -0.117 4.117 21 N -0.182 5.182 22 C -0.064 4.064 23 H 0.027 0.973 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.630 -2.133 -11.182 11.948 hybrid contribution 1.014 0.440 0.213 1.126 sum 4.644 -1.693 -10.969 12.031 Atomic orbital electron populations 1.21739 0.95614 1.00824 1.00511 1.17727 0.94020 0.94459 0.84733 0.93576 1.20906 1.31795 1.12639 0.88891 0.91880 1.24905 0.94832 0.94982 0.99024 1.69862 1.36366 1.22782 1.23911 0.86431 0.78460 0.80283 0.81981 1.20653 1.21004 1.19627 1.25225 0.86890 0.88634 0.90673 1.70670 1.26254 1.12315 1.12294 1.19252 0.97773 0.92906 0.94059 1.20023 1.00038 0.96037 0.93891 1.20319 0.98550 0.97742 0.96589 1.20670 1.04579 0.91642 1.01003 1.16575 0.97794 0.84321 0.92733 1.91427 1.79515 1.51961 1.89685 1.18914 1.05970 0.92894 0.93964 1.45497 1.43016 1.10962 1.18680 1.22004 0.99885 0.79511 1.05028 0.97288 0.93731 0.88769 0.92626 0.85144 0.85051 0.84855 0.91111 0.88389 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.95 37.16 0.33 -2.72 16 2 C 0.11 2.71 2.62 -92.93 -0.24 2.47 16 3 H 0.05 1.13 6.66 -51.93 -0.35 0.78 16 4 C -0.50 -13.57 8.54 -34.44 -0.29 -13.86 16 5 H 0.06 1.77 7.74 -52.48 -0.41 1.36 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.06 11.32 55.43 0.63 -23.44 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.35 8.01 6.31 -154.85 -0.98 7.03 16 13 N -0.50 -11.65 11.26 -8.24 -0.09 -11.74 16 14 C 0.08 1.65 7.23 -84.71 -0.61 1.04 16 15 C -0.08 -1.29 10.05 -39.59 -0.40 -1.69 16 16 C -0.11 -1.46 9.96 -39.98 -0.40 -1.85 16 17 C -0.16 -2.17 10.01 -39.45 -0.39 -2.56 16 18 C 0.11 1.78 7.32 -39.36 -0.29 1.50 16 19 F -0.15 -2.33 16.12 2.25 0.04 -2.29 16 20 C -0.01 -0.14 6.88 -83.91 -0.58 -0.71 16 21 N -0.49 -9.87 3.21 -118.46 -0.38 -10.25 16 22 C 0.08 1.23 10.62 59.84 0.64 1.86 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 24 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.53 7.01 -51.93 -0.36 1.17 16 32 H 0.08 1.11 7.20 -51.93 -0.37 0.74 16 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -29.40 278.14 -7.42 -36.82 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -3.48 Total: -1.32 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.31 Total: -7.89 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.15 Total: -45.43 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.40 -7.42 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.102 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds