Wall clock time and date at job start Mon Mar 30 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47204 * 2 1 4 4 C 1.50695 * 109.47049 * 120.00002 * 2 1 3 5 5 H 1.08004 * 120.00060 * 119.99616 * 4 2 1 6 6 C 1.37878 * 120.00465 * 300.00322 * 4 2 1 7 7 N 1.31517 * 119.99653 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00586 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47640 * 89.99481 * 8 6 4 10 10 H 1.48498 * 109.47079 * 209.99739 * 8 6 4 11 11 H 1.48504 * 109.46775 * 329.99803 * 8 6 4 12 12 C 1.50697 * 109.47166 * 240.00244 * 2 1 3 13 13 N 1.30122 * 124.95222 * 300.02458 * 12 2 1 14 14 C 1.35780 * 109.65538 * 179.73987 * 13 12 2 15 15 C 1.39809 * 133.57308 * 179.54352 * 14 13 12 16 16 C 1.36586 * 119.92651 * 180.42998 * 15 14 13 17 17 C 1.38782 * 120.68963 * 0.25941 * 16 15 14 18 18 C 1.38046 * 120.41828 * 359.97438 * 17 16 15 19 19 F 1.35102 * 120.17109 * 180.02562 * 18 17 16 20 20 C 1.39026 * 119.65215 * 0.02562 * 18 17 16 21 21 N 1.36001 * 124.95496 * 119.99953 * 12 2 1 22 22 C 1.46489 * 126.35898 * 0.02562 * 21 12 2 23 23 H 1.08997 * 109.46936 * 59.99955 * 1 2 3 24 24 H 1.08995 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47059 * 300.00253 * 1 2 3 26 26 H 0.97001 * 120.00068 * 180.02562 * 7 6 4 27 27 H 1.08002 * 120.03950 * 0.71618 * 15 14 13 28 28 H 1.07997 * 119.65292 * 180.27788 * 16 15 14 29 29 H 1.08000 * 119.78802 * 179.97438 * 17 16 15 30 30 H 1.09006 * 109.47231 * 269.99730 * 22 21 12 31 31 H 1.08996 * 109.47465 * 29.99143 * 22 21 12 32 32 H 1.08998 * 109.48038 * 150.00072 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5442 4.4120 10 1 1.3444 -0.9490 5.1123 11 1 2.4880 -2.5654 3.7122 12 6 2.0323 -0.7103 -1.2305 13 7 1.7777 -1.9504 -1.5315 14 6 2.3785 -2.2676 -2.7071 15 6 2.4410 -3.4355 -3.4731 16 6 3.1514 -3.4481 -4.6396 17 6 3.8200 -2.3123 -5.0741 18 6 3.7767 -1.1490 -4.3322 19 9 4.4290 -0.0460 -4.7601 20 6 3.0583 -1.1184 -3.1423 21 7 2.8175 -0.1487 -2.1884 22 6 3.3157 1.2288 -2.2055 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7094 1.1617 3.4844 27 1 1.9243 -4.3254 -3.1452 28 1 3.1929 -4.3514 -5.2301 29 1 4.3777 -2.3386 -5.9986 30 1 2.6001 1.8675 -2.7234 31 1 3.4434 1.5817 -1.1822 32 1 4.2740 1.2624 -2.7237 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259922516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:13 Heat of formation + Delta-G solvation = 3.039040 kcal Electronic energy + Delta-G solvation = -17743.460580 eV Core-core repulsion = 14811.307616 eV Total energy + Delta-G solvation = -2932.152964 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94232 -43.07870 -38.43242 -36.17026 -34.99226 -32.91927 -31.08485 -29.75410 -27.80184 -27.31258 -24.88551 -23.41176 -22.53697 -20.77228 -18.88821 -18.41718 -18.11178 -17.20120 -17.15636 -16.60093 -16.40358 -16.08041 -15.50575 -14.84503 -14.61089 -14.26142 -14.11468 -13.69275 -13.60434 -12.98026 -12.88236 -12.82721 -12.70026 -12.45068 -12.23355 -12.18126 -11.87282 -11.25763 -11.15447 -10.92701 -10.54306 -9.28813 -8.97055 -8.18247 -6.30937 -0.12756 0.44325 1.40249 1.42546 1.52550 1.65447 1.79965 2.42180 2.80469 3.10410 3.19906 3.32626 3.61234 3.80168 3.96879 4.25221 4.33028 4.36296 4.49032 4.54453 4.75503 4.85703 4.93914 5.01377 5.13245 5.29321 5.40299 5.47238 5.58077 5.70235 5.84243 5.94294 6.11113 6.24301 6.70795 7.05521 7.36211 8.87109 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031232 B = 0.006442 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.309667 B = 4345.397070 C = 4662.016043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.114 3.886 3 H 0.040 0.960 4 C -0.522 4.522 5 H 0.042 0.958 6 C 0.026 3.974 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.320 3.680 13 N -0.531 5.531 14 C 0.040 3.960 15 C -0.090 4.090 16 C -0.090 4.090 17 C -0.133 4.133 18 C 0.090 3.910 19 F -0.145 7.145 20 C -0.024 4.024 21 N -0.496 5.496 22 C 0.074 3.926 23 H 0.025 0.975 24 H 0.029 0.971 25 H 0.077 0.923 26 H 0.268 0.732 27 H 0.143 0.857 28 H 0.182 0.818 29 H 0.176 0.824 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -2.939 -13.848 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.058 0.942 4 C -0.560 4.560 5 H 0.060 0.940 6 C -0.174 4.174 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.203 1.203 12 C 0.056 3.944 13 N -0.250 5.250 14 C -0.080 4.080 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.153 4.153 18 C 0.068 3.932 19 F -0.123 7.123 20 C -0.134 4.134 21 N -0.184 5.184 22 C -0.067 4.067 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.199 0.801 29 H 0.193 0.807 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.831 -3.167 -13.265 14.469 hybrid contribution 0.699 0.684 0.676 1.189 sum 5.530 -2.483 -12.590 13.973 Atomic orbital electron populations 1.21548 0.95673 0.99744 1.00378 1.17483 0.94009 0.93997 0.85124 0.94238 1.21018 1.32097 1.12355 0.90576 0.93991 1.25556 0.94935 0.95618 1.01301 1.69940 1.36702 1.23442 1.24638 0.85565 0.78411 0.78757 0.79009 1.19768 1.20021 1.20313 1.24643 0.89283 0.89124 0.91391 1.70494 1.27394 1.12875 1.14246 1.19770 0.99214 0.95008 0.94052 1.20415 1.00734 0.95192 0.94603 1.20885 0.95716 0.99239 0.95137 1.21277 1.02612 0.90123 1.01249 1.16847 0.98360 0.85581 0.92447 1.91430 1.79394 1.52051 1.89471 1.19301 1.06747 0.92437 0.94886 1.45576 1.42430 1.12184 1.18251 1.22207 1.01157 0.78137 1.05202 0.95576 0.95141 0.90482 0.92298 0.83925 0.80073 0.80658 0.89360 0.89011 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 8.95 71.98 0.64 -5.04 16 2 C 0.11 5.81 2.62 -12.29 -0.03 5.78 16 3 H 0.04 2.02 6.66 -2.38 -0.02 2.00 16 4 C -0.52 -29.21 8.54 25.60 0.22 -28.99 16 5 H 0.04 2.47 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.41 5.30 84.65 0.45 1.86 16 7 N -0.91 -49.94 11.32 21.45 0.24 -49.70 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.32 15.25 6.31 137.93 0.87 16.12 16 13 N -0.53 -25.74 11.26 -180.00 -2.03 -27.77 16 14 C 0.04 1.61 7.23 39.45 0.29 1.89 16 15 C -0.09 -2.71 10.05 22.26 0.22 -2.49 16 16 C -0.09 -1.92 9.96 22.01 0.22 -1.70 16 17 C -0.13 -3.00 10.01 22.35 0.22 -2.77 16 18 C 0.09 2.75 7.32 22.41 0.16 2.91 16 19 F -0.14 -4.22 16.12 44.97 0.73 -3.50 16 20 C -0.02 -0.91 6.88 38.87 0.27 -0.65 16 21 N -0.50 -20.18 3.21 -528.71 -1.70 -21.88 16 22 C 0.07 2.34 10.62 127.77 1.36 3.70 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 4.04 6.07 -2.39 -0.01 4.03 16 26 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 28 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.09 2.97 7.01 -2.39 -0.02 2.95 16 32 H 0.10 2.65 7.20 -2.39 -0.02 2.64 16 Total: -1.00 -65.96 278.14 5.30 -60.67 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.13 Total: 5.99 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.89 Total: -9.37 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -3.48 Total: -99.35 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.73 Total: -3.50 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.96 5.30 -60.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.705 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds