Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46722 * 2 1 4 4 C 1.50702 * 109.47146 * 120.00549 * 2 1 3 5 5 H 1.07997 * 119.99813 * 120.00608 * 4 2 1 6 6 C 1.37878 * 119.99362 * 299.99658 * 4 2 1 7 7 N 1.31506 * 120.00531 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99310 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47137 * 90.00312 * 8 6 4 10 10 H 1.48507 * 109.46810 * 210.00384 * 8 6 4 11 11 H 1.48498 * 109.47336 * 330.00012 * 8 6 4 12 12 C 1.50704 * 109.47045 * 240.00516 * 2 1 3 13 13 N 1.30114 * 124.94515 * 300.02420 * 12 2 1 14 14 C 1.35789 * 109.65288 * 179.97438 * 13 12 2 15 15 C 1.39772 * 133.53898 * 179.97438 * 14 13 12 16 16 C 1.37781 * 119.74725 * 180.02562 * 15 14 13 17 17 F 1.35102 * 119.76215 * 180.02562 * 16 15 14 18 18 C 1.38988 * 120.47225 * 0.02562 * 16 15 14 19 19 C 1.37815 * 120.43534 * 0.02562 * 18 16 15 20 20 C 1.38806 * 119.86245 * 0.02562 * 19 18 16 21 21 N 1.36008 * 124.95102 * 119.98376 * 12 2 1 22 22 C 1.46497 * 126.35295 * 0.02562 * 21 12 2 23 23 H 1.09000 * 109.47269 * 59.99788 * 1 2 3 24 24 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47067 * 299.99794 * 1 2 3 26 26 H 0.97006 * 120.00198 * 179.97438 * 7 6 4 27 27 H 1.07997 * 120.12670 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.77977 * 179.97438 * 18 16 15 29 29 H 1.07998 * 120.06948 * 179.97438 * 19 18 16 30 30 H 1.09004 * 109.46979 * 89.99959 * 22 21 12 31 31 H 1.09001 * 109.47792 * 210.00310 * 22 21 12 32 32 H 1.09004 * 109.47430 * 330.00877 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4117 10 1 1.3444 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7120 12 6 2.0323 -0.7103 -1.2306 13 7 1.7776 -1.9503 -1.5315 14 6 2.3827 -2.2691 -2.7046 15 6 2.4402 -3.4356 -3.4724 16 6 3.1573 -3.4450 -4.6489 17 9 3.2127 -4.5722 -5.3915 18 6 3.8241 -2.3031 -5.0770 19 6 3.7773 -1.1459 -4.3300 20 6 3.0605 -1.1189 -3.1417 21 7 2.8173 -0.1485 -2.1887 22 6 3.3150 1.2293 -2.2056 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7082 1.1607 3.4845 27 1 1.9252 -4.3264 -3.1444 28 1 4.3832 -2.3231 -6.0008 29 1 4.2980 -0.2622 -4.6681 30 1 4.2777 1.2741 -1.6964 31 1 3.4341 1.5600 -3.2374 32 1 2.6037 1.8789 -1.6956 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259926254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = 19.405865 kcal Electronic energy + Delta-G solvation = -17510.592356 eV Core-core repulsion = 14579.149111 eV Total energy + Delta-G solvation = -2931.443245 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.61593 -41.67649 -36.91986 -34.24706 -33.74242 -30.95832 -30.09046 -28.09527 -26.51133 -25.27866 -23.31209 -21.90306 -21.18692 -19.12988 -17.64373 -16.85341 -16.31728 -16.03420 -15.50513 -15.01732 -14.93754 -14.57135 -13.97688 -13.23890 -13.04989 -12.84979 -12.72814 -12.52480 -12.26943 -11.73268 -11.23935 -11.21227 -10.98784 -10.68817 -10.48328 -10.27723 -9.98519 -9.95914 -9.31585 -9.14423 -8.51316 -7.78920 -7.72504 -6.15521 -4.21322 1.17692 1.60726 3.05961 3.25880 3.30100 3.33320 3.41486 4.09494 4.36055 4.36895 4.67411 4.99124 5.10661 5.16107 5.17260 5.40061 5.44347 5.67508 5.75437 5.87131 5.88294 6.20996 6.33759 6.58723 6.70929 6.81882 6.89878 6.95307 7.15731 7.42808 7.61720 7.73501 7.92675 8.13870 8.61873 8.80160 9.43471 10.90868 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031244 B = 0.005973 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.971292 B = 4686.625073 C = 5079.397397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.111 3.889 3 H 0.047 0.953 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.351 3.649 13 N -0.500 5.500 14 C 0.081 3.919 15 C -0.109 4.109 16 C 0.080 3.920 17 F -0.145 7.145 18 C -0.156 4.156 19 C -0.076 4.076 20 C 0.020 3.980 21 N -0.500 5.500 22 C 0.082 3.918 23 H 0.008 0.992 24 H 0.043 0.957 25 H 0.094 0.906 26 H 0.264 0.736 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 0.343 -11.638 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.064 0.936 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.196 1.196 12 C 0.088 3.912 13 N -0.218 5.218 14 C -0.039 4.039 15 C -0.130 4.130 16 C 0.059 3.941 17 F -0.124 7.124 18 C -0.176 4.176 19 C -0.097 4.097 20 C -0.090 4.090 21 N -0.189 5.189 22 C -0.061 4.061 23 H 0.027 0.973 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.143 0.857 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.140 0.002 -11.058 11.808 hybrid contribution 0.898 -0.028 0.202 0.921 sum 5.037 -0.026 -10.856 11.968 Atomic orbital electron populations 1.21751 0.95693 1.00856 1.00493 1.17727 0.93986 0.94433 0.84800 0.93564 1.20897 1.31789 1.12589 0.88878 0.91901 1.24896 0.94833 0.94972 0.99018 1.69854 1.36337 1.22837 1.23907 0.86438 0.78459 0.80304 0.81997 1.20650 1.21008 1.19636 1.25223 0.86733 0.88567 0.90702 1.70646 1.26337 1.12357 1.12469 1.18920 0.98158 0.92737 0.94111 1.19980 1.01731 0.97799 0.93462 1.17100 1.02311 0.83045 0.91673 1.91453 1.95349 1.49743 1.75880 1.20596 1.03584 0.91756 1.01660 1.19625 0.99706 0.98206 0.92153 1.18934 1.04479 0.91233 0.94328 1.45527 1.43274 1.10948 1.19163 1.21914 1.01110 0.79979 1.03059 0.97287 0.93736 0.88782 0.92632 0.84551 0.84775 0.85697 0.90868 0.90581 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.95 37.16 0.33 -2.71 16 2 C 0.11 2.66 2.62 -92.92 -0.24 2.41 16 3 H 0.05 1.10 6.66 -51.93 -0.35 0.75 16 4 C -0.50 -13.42 8.54 -34.44 -0.29 -13.72 16 5 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.85 11.32 55.43 0.63 -23.23 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.35 7.84 6.31 -154.84 -0.98 6.87 16 13 N -0.50 -11.66 11.26 -8.24 -0.09 -11.75 16 14 C 0.08 1.65 7.23 -84.70 -0.61 1.04 16 15 C -0.11 -1.92 10.07 -39.18 -0.39 -2.31 16 16 C 0.08 1.24 7.28 -39.47 -0.29 0.96 16 17 F -0.15 -2.17 17.26 2.25 0.04 -2.13 16 18 C -0.16 -2.11 10.00 -39.46 -0.39 -2.50 16 19 C -0.08 -1.08 10.04 -39.53 -0.40 -1.48 16 20 C 0.02 0.35 6.87 -83.95 -0.58 -0.22 16 21 N -0.50 -9.29 3.21 -118.49 -0.38 -9.67 16 22 C 0.08 1.12 10.81 59.85 0.65 1.76 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 LS Contribution 280.44 15.07 4.23 4.23 Total: -1.00 -29.21 280.44 -7.42 -36.63 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.53 Total: -1.61 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.29 Total: -8.29 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.15 Total: -44.65 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.21 -7.42 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.033 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds