Wall clock time and date at job start Mon Mar 30 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29996 * 126.86402 * 2 1 4 4 O 1.20833 * 112.01387 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.87266 * 359.74876 * 4 3 2 6 6 C 1.50697 * 126.89440 * 180.27347 * 5 4 3 7 7 C 1.36797 * 106.20653 * 0.40619 * 5 4 3 8 8 C 1.47989 * 128.18079 * 179.89322 * 7 5 4 9 9 C 1.35701 * 126.57169 * 294.67472 * 8 7 5 10 10 N 1.34244 * 107.52541 * 179.97438 * 9 8 7 11 11 C 1.30289 * 108.88571 * 359.97438 * 10 9 8 12 12 C 1.50707 * 125.49102 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47220 * 89.97163 * 12 11 10 14 14 H 1.08004 * 119.99848 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00370 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99629 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00523 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47097 * 60.00337 * 17 15 13 19 19 H 1.48493 * 109.47329 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47019 * 300.00322 * 17 15 13 21 21 O 1.34093 * 109.02190 * 359.97438 * 11 10 9 22 22 H 1.08994 * 109.46858 * 270.01770 * 1 2 3 23 23 H 1.08995 * 109.47118 * 30.01892 * 1 2 3 24 24 H 1.09006 * 109.46953 * 150.02057 * 1 2 3 25 25 H 1.09002 * 109.47265 * 270.15418 * 6 5 4 26 26 H 1.08998 * 109.47599 * 30.15745 * 6 5 4 27 27 H 1.09004 * 109.47222 * 150.16022 * 6 5 4 28 28 H 1.08002 * 126.23861 * 0.23984 * 9 8 7 29 29 H 1.08996 * 109.47016 * 209.97788 * 12 11 10 30 30 H 1.09003 * 109.46712 * 329.97402 * 12 11 10 31 31 H 0.97002 * 120.00140 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0400 0.0000 4 8 3.4549 0.7304 0.0005 5 6 3.6188 -0.6002 0.0064 6 6 4.9255 -1.3507 0.0145 7 6 2.3618 -1.1397 0.0005 8 6 1.9800 -2.5695 0.0011 9 6 2.2164 -3.4700 -0.9862 10 7 1.7106 -4.6482 -0.5884 11 6 1.1803 -4.5023 0.5927 12 6 0.5069 -5.5896 1.3899 13 6 1.5272 -6.2836 2.2548 14 1 2.5600 -5.9685 2.2301 15 6 1.1422 -7.3201 3.0785 16 7 -0.1154 -7.7034 3.1089 17 14 2.4069 -8.1799 4.1513 18 1 3.0219 -7.1953 5.0773 19 1 1.7434 -9.2514 4.9366 20 1 3.4608 -8.7769 3.2922 21 8 1.3312 -3.2290 0.9853 22 1 -0.3633 0.0003 1.0276 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 5.2461 -1.5333 -1.0112 26 1 5.6812 -0.7592 0.5314 27 1 4.7946 -2.3027 0.5291 28 1 2.7233 -3.2754 -1.9198 29 1 -0.2666 -5.1516 2.0206 30 1 0.0554 -6.3120 0.7099 31 1 -0.3863 -8.4328 3.6881 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:07 Heat of formation + Delta-G solvation = 68.036642 kcal Electronic energy + Delta-G solvation = -17294.559245 eV Core-core repulsion = 14352.851999 eV Total energy + Delta-G solvation = -2941.707246 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.98266 -42.56624 -35.21482 -34.14916 -33.78850 -33.33421 -30.70746 -28.82787 -28.42177 -26.97248 -24.07374 -22.89628 -21.51649 -20.35249 -20.10922 -17.75834 -17.49702 -16.77589 -16.07720 -15.60139 -14.93709 -14.56824 -14.11229 -13.54075 -13.39686 -13.27011 -12.96203 -12.77059 -12.65267 -12.44024 -12.29660 -11.62186 -11.21785 -10.99824 -10.79701 -10.69458 -10.27040 -10.08097 -9.82967 -9.69891 -9.34097 -8.59205 -8.01145 -6.21885 -4.27308 1.20252 1.79296 2.17172 2.84117 3.26127 3.28604 3.30694 3.36977 3.43299 4.14969 4.32608 4.34038 4.86601 4.94528 5.02681 5.15431 5.19451 5.26883 5.44507 5.46671 5.52749 5.57881 5.67624 5.83093 6.02270 6.33875 6.49347 6.90255 7.18562 7.21073 7.71489 7.97977 8.16114 8.48362 8.72712 9.36918 10.88285 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.005289 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.664844 B = 5292.845058 C = 5612.930094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.044 3.956 3 N -0.368 5.368 4 O 0.099 5.901 5 C -0.002 4.002 6 C -0.075 4.075 7 C -0.119 4.119 8 C -0.028 4.028 9 C -0.004 4.004 10 N -0.507 5.507 11 C 0.264 3.736 12 C 0.102 3.898 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.890 5.890 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.274 1.274 21 O -0.195 6.195 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.175 0.825 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 12.728 -6.109 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 N -0.076 5.076 4 O 0.037 5.963 5 C -0.066 4.066 6 C -0.133 4.133 7 C -0.123 4.123 8 C -0.082 4.082 9 C -0.145 4.145 10 N -0.235 5.235 11 C 0.059 3.941 12 C 0.065 3.935 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.199 1.199 21 O -0.083 6.083 22 H 0.103 0.897 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.192 0.808 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.186 13.352 -6.313 15.653 hybrid contribution 0.565 -0.589 0.895 1.211 sum 5.751 12.763 -5.418 15.011 Atomic orbital electron populations 1.20196 0.85514 1.03787 1.03865 1.23685 0.99086 0.87760 1.01015 1.73667 0.89146 1.23618 1.21129 1.84784 1.21494 1.22058 1.67959 1.24621 0.97784 0.83630 1.00531 1.20422 0.89240 0.99143 1.04449 1.18118 0.91668 0.90014 1.12544 1.19632 1.07022 0.90825 0.90717 1.23249 1.02979 0.88338 0.99903 1.70537 1.15939 1.24727 1.12303 1.27947 0.94255 0.81639 0.90239 1.18139 0.95339 0.86472 0.93588 1.20798 0.94452 1.17241 1.23579 0.92181 1.24935 0.95696 0.96469 0.96716 1.69916 1.15655 1.28379 1.38804 0.86433 0.81085 0.79104 0.80172 1.20028 1.20945 1.19902 1.84568 1.58928 1.23379 1.41439 0.89710 0.90344 0.89865 0.88921 0.89436 0.88596 0.80788 0.93141 0.91389 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.40 36.01 0.37 -0.56 16 2 C 0.04 0.66 7.37 -81.74 -0.60 0.05 16 3 N -0.37 -5.47 12.03 33.71 0.41 -5.07 16 4 O 0.10 1.34 11.17 17.14 0.19 1.54 16 5 C 0.00 -0.02 7.55 -34.83 -0.26 -0.28 16 6 C -0.08 -0.70 10.32 36.00 0.37 -0.33 16 7 C -0.12 -1.84 6.22 -104.80 -0.65 -2.50 16 8 C -0.03 -0.51 6.98 -36.49 -0.25 -0.77 16 9 C 0.00 -0.08 11.86 -17.40 -0.21 -0.28 16 10 N -0.51 -11.04 11.27 -10.80 -0.12 -11.16 16 11 C 0.26 6.03 7.52 -12.93 -0.10 5.94 16 12 C 0.10 2.58 5.60 -29.04 -0.16 2.42 16 13 C -0.52 -14.28 9.09 -34.44 -0.31 -14.59 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 17 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 O -0.19 -4.17 10.80 4.12 0.04 -4.12 16 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 29 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 286.97 15.07 4.32 4.32 Total: -1.00 -30.40 286.97 -4.69 -35.09 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.34 Total: -2.88 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.90 Total: -9.23 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 1.02 Total: -40.57 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: 0.24 Total: -2.59 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.40 -4.69 -35.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.126 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds