Wall clock time and date at job start Mon Mar 30 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29996 * 126.86402 * 2 1 4 4 O 1.20833 * 112.01387 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.87266 * 359.74876 * 4 3 2 6 6 C 1.50697 * 126.89440 * 180.27347 * 5 4 3 7 7 C 1.36797 * 106.20653 * 0.40619 * 5 4 3 8 8 C 1.47989 * 128.18079 * 179.89322 * 7 5 4 9 9 C 1.35701 * 126.57169 * 294.67472 * 8 7 5 10 10 N 1.34244 * 107.52541 * 179.97438 * 9 8 7 11 11 C 1.30289 * 108.88571 * 359.97438 * 10 9 8 12 12 C 1.50707 * 125.49102 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47220 * 89.97163 * 12 11 10 14 14 H 1.08004 * 119.99848 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00370 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99629 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00523 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47097 * 60.00337 * 17 15 13 19 19 H 1.48493 * 109.47329 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47019 * 300.00322 * 17 15 13 21 21 O 1.34093 * 109.02190 * 359.97438 * 11 10 9 22 22 H 1.08994 * 109.46858 * 270.01770 * 1 2 3 23 23 H 1.08995 * 109.47118 * 30.01892 * 1 2 3 24 24 H 1.09006 * 109.46953 * 150.02057 * 1 2 3 25 25 H 1.09002 * 109.47265 * 270.15418 * 6 5 4 26 26 H 1.08998 * 109.47599 * 30.15745 * 6 5 4 27 27 H 1.09004 * 109.47222 * 150.16022 * 6 5 4 28 28 H 1.08002 * 126.23861 * 0.23984 * 9 8 7 29 29 H 1.08996 * 109.47016 * 209.97788 * 12 11 10 30 30 H 1.09003 * 109.46712 * 329.97402 * 12 11 10 31 31 H 0.97002 * 120.00140 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0400 0.0000 4 8 3.4549 0.7304 0.0005 5 6 3.6188 -0.6002 0.0064 6 6 4.9255 -1.3507 0.0145 7 6 2.3618 -1.1397 0.0005 8 6 1.9800 -2.5695 0.0011 9 6 2.2164 -3.4700 -0.9862 10 7 1.7106 -4.6482 -0.5884 11 6 1.1803 -4.5023 0.5927 12 6 0.5069 -5.5896 1.3899 13 6 1.5272 -6.2836 2.2548 14 1 2.5600 -5.9685 2.2301 15 6 1.1422 -7.3201 3.0785 16 7 -0.1154 -7.7034 3.1089 17 14 2.4069 -8.1799 4.1513 18 1 3.0219 -7.1953 5.0773 19 1 1.7434 -9.2514 4.9366 20 1 3.4608 -8.7769 3.2922 21 8 1.3312 -3.2290 0.9853 22 1 -0.3633 0.0003 1.0276 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 5.2461 -1.5333 -1.0112 26 1 5.6812 -0.7592 0.5314 27 1 4.7946 -2.3027 0.5291 28 1 2.7233 -3.2754 -1.9198 29 1 -0.2666 -5.1516 2.0206 30 1 0.0554 -6.3120 0.7099 31 1 -0.3863 -8.4328 3.6881 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:07 Heat of formation + Delta-G solvation = 47.916742 kcal Electronic energy + Delta-G solvation = -17295.431710 eV Core-core repulsion = 14352.851999 eV Total energy + Delta-G solvation = -2942.579710 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.09969 -44.17017 -36.39420 -35.81923 -35.41131 -34.70201 -32.45132 -30.04364 -29.60893 -28.27008 -25.87362 -24.37061 -22.98430 -21.97007 -21.21303 -18.88051 -18.79264 -18.74974 -17.52572 -17.29477 -16.57407 -16.11491 -15.17219 -14.80783 -14.51309 -14.44660 -14.28776 -14.13805 -13.98292 -13.63707 -13.55724 -13.36789 -12.87580 -12.63470 -12.34624 -12.26628 -12.09623 -11.73390 -11.62969 -11.08667 -10.67174 -10.49386 -9.52922 -8.28927 -6.43180 0.05259 0.44719 0.87534 1.42513 1.45191 1.53327 1.65050 1.75064 2.09209 2.39970 3.02299 3.04770 3.30635 3.35940 3.70711 3.94127 4.08306 4.20152 4.45845 4.49955 4.60494 4.62149 4.73233 4.85762 4.91377 5.02605 5.06264 5.09042 5.19538 5.37983 5.60218 5.92791 6.61569 6.85844 7.08115 7.25322 8.81179 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.005289 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.664844 B = 5292.845058 C = 5612.930094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.039 3.961 3 N -0.381 5.381 4 O 0.103 5.897 5 C 0.028 3.972 6 C -0.078 4.078 7 C -0.160 4.160 8 C -0.009 4.009 9 C -0.007 4.007 10 N -0.518 5.518 11 C 0.236 3.764 12 C 0.111 3.889 13 C -0.543 4.543 14 H 0.054 0.946 15 C 0.017 3.983 16 N -0.920 5.920 17 Si 0.972 3.028 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.268 1.268 21 O -0.210 6.210 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.215 0.785 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 13.609 -6.429 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 N -0.090 5.090 4 O 0.043 5.957 5 C -0.037 4.037 6 C -0.135 4.135 7 C -0.165 4.165 8 C -0.062 4.062 9 C -0.146 4.146 10 N -0.247 5.247 11 C 0.032 3.968 12 C 0.073 3.927 13 C -0.581 4.581 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.559 5.559 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.193 1.193 21 O -0.098 6.098 22 H 0.106 0.894 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.140 0.860 26 H 0.133 0.867 27 H 0.102 0.898 28 H 0.232 0.768 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.176 14.259 -6.636 17.288 hybrid contribution -0.003 -0.731 0.934 1.186 sum 7.174 13.528 -5.703 16.340 Atomic orbital electron populations 1.20281 0.84367 1.04558 1.04278 1.24010 1.00086 0.87498 1.00481 1.73664 0.89520 1.23731 1.22054 1.84783 1.21066 1.22246 1.67622 1.25208 0.98281 0.83255 0.96935 1.20684 0.87943 0.98344 1.06497 1.18170 0.93207 0.88879 1.16234 1.20065 1.04916 0.91745 0.89495 1.23796 1.02876 0.86800 1.01167 1.70476 1.15728 1.26766 1.11757 1.27224 0.96631 0.81980 0.91004 1.17747 0.94890 0.86960 0.93066 1.21068 0.94578 1.17996 1.24449 0.92754 1.25814 0.97695 0.96960 0.97838 1.70018 1.17416 1.28893 1.39536 0.85399 0.78585 0.78108 0.78401 1.19295 1.20014 1.19257 1.84526 1.59523 1.23035 1.42732 0.89439 0.88332 0.90334 0.86014 0.86668 0.89820 0.76841 0.94571 0.93201 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.40 71.24 0.74 -1.10 16 2 C 0.04 1.10 7.37 43.88 0.32 1.42 16 3 N -0.38 -10.66 12.03 -48.35 -0.58 -11.24 16 4 O 0.10 2.55 11.17 71.55 0.80 3.35 16 5 C 0.03 0.64 7.55 25.35 0.19 0.84 16 6 C -0.08 -1.17 10.32 71.23 0.73 -0.43 16 7 C -0.16 -4.71 6.22 -19.98 -0.12 -4.84 16 8 C -0.01 -0.33 6.98 24.27 0.17 -0.16 16 9 C -0.01 -0.24 11.86 83.74 0.99 0.76 16 10 N -0.52 -22.54 11.27 -302.79 -3.41 -25.95 16 11 C 0.24 11.08 7.52 88.34 0.66 11.74 16 12 C 0.11 5.85 5.60 29.10 0.16 6.02 16 13 C -0.54 -30.34 9.09 25.60 0.23 -30.11 16 14 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.02 0.94 5.46 84.65 0.46 1.40 16 16 N -0.92 -52.71 13.29 21.45 0.28 -52.43 16 17 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 O -0.21 -9.11 10.80 -8.16 -0.09 -9.20 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 25 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 28 H 0.21 5.33 8.06 -2.91 -0.02 5.30 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -65.94 286.97 4.73 -61.21 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 1.15 Total: 4.04 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.55 Total: -14.46 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -3.71 Total: -89.62 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.71 Total: -5.85 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -65.94 4.73 -61.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.132 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds