Wall clock time and date at job start Mon Mar 30 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30443 * 125.44356 * 2 1 4 4 C 1.33975 * 108.95676 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.26094 * 180.02562 * 4 3 2 6 6 C 1.36139 * 107.47936 * 359.97438 * 4 3 2 7 7 C 1.47050 * 126.62126 * 180.02562 * 6 4 3 8 8 N 1.31500 * 125.75399 * 359.67366 * 7 6 4 9 9 C 1.34174 * 108.61740 * 179.83640 * 8 7 6 10 10 C 1.34510 * 107.89199 * 0.42762 * 9 8 7 11 11 C 1.50702 * 126.34099 * 179.70989 * 10 9 8 12 12 C 1.50690 * 109.47159 * 90.01088 * 11 10 9 13 13 H 1.08000 * 120.00621 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99904 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00247 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99973 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47303 * 89.99519 * 16 14 12 18 18 H 1.48495 * 109.47076 * 209.99945 * 16 14 12 19 19 H 1.48502 * 109.47014 * 329.99754 * 16 14 12 20 20 O 1.34539 * 125.75969 * 179.97438 * 7 6 4 21 21 O 1.33936 * 125.44702 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.46508 * 270.00333 * 1 2 3 23 23 H 1.09002 * 109.46952 * 29.99544 * 1 2 3 24 24 H 1.08996 * 109.46920 * 150.00284 * 1 2 3 25 25 H 1.09009 * 109.47116 * 269.97110 * 5 4 3 26 26 H 1.09001 * 109.47634 * 29.96751 * 5 4 3 27 27 H 1.09002 * 109.47476 * 149.97092 * 5 4 3 28 28 H 1.08006 * 126.05052 * 180.16753 * 9 8 7 29 29 H 1.08999 * 109.47027 * 210.01807 * 11 10 9 30 30 H 1.09009 * 109.46583 * 330.01249 * 11 10 9 31 31 H 0.96993 * 120.00482 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2635 1.0627 0.0000 4 6 3.5482 0.6825 -0.0006 5 6 4.7476 1.5947 -0.0002 6 6 3.5718 -0.6787 -0.0003 7 6 4.7670 -1.5353 -0.0003 8 7 6.0132 -1.1155 -0.0065 9 6 6.8250 -2.1837 -0.0004 10 6 6.0560 -3.2873 0.0002 11 6 6.5413 -4.7140 0.0000 12 6 6.7038 -5.1895 1.4206 13 1 6.4778 -4.5253 2.2417 14 6 7.1400 -6.4731 1.6724 15 7 7.2813 -6.8883 2.9122 16 14 7.5302 -7.6223 0.2523 17 1 8.9592 -7.4763 -0.1243 18 1 7.2675 -9.0247 0.6639 19 1 6.6741 -7.2794 -0.9116 20 8 4.7701 -2.8807 0.0004 21 8 2.2838 -1.0911 0.0005 22 1 -0.3632 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 5.0369 1.8149 -1.0279 26 1 4.4982 2.5229 0.5138 27 1 5.5756 1.1061 0.5135 28 1 7.9049 -2.1614 -0.0007 29 1 5.8156 -5.3446 -0.5136 30 1 7.5007 -4.7713 -0.5144 31 1 7.5885 -7.7911 3.0893 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:40 Heat of formation + Delta-G solvation = 39.297867 kcal Electronic energy + Delta-G solvation = -17121.295839 eV Core-core repulsion = 14178.342386 eV Total energy + Delta-G solvation = -2942.953453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.45313 -42.70865 -35.40852 -34.32208 -33.83233 -32.99965 -31.32961 -29.48188 -28.43617 -26.03599 -23.18315 -22.51964 -21.65234 -20.85242 -20.42484 -17.72914 -17.25767 -16.96669 -15.83281 -15.80907 -14.86696 -14.56774 -14.14020 -13.63075 -13.42510 -13.15659 -13.12794 -12.94706 -12.77861 -12.35677 -12.06944 -11.97909 -11.12648 -11.04641 -10.94718 -10.81126 -10.73506 -10.35827 -10.03978 -9.67193 -9.27146 -8.77929 -7.66833 -6.26087 -4.29830 0.78827 2.14242 2.21915 2.60677 3.01298 3.17053 3.22895 3.25363 3.25919 3.81810 4.23666 4.45265 4.70588 5.04507 5.09687 5.12869 5.18266 5.37531 5.50962 5.60125 5.69417 5.76045 5.90764 5.93114 6.10556 6.29262 6.38038 6.59565 6.70871 6.90224 7.35766 7.56542 8.04024 8.23993 8.75221 9.29397 10.86183 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035042 B = 0.004952 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.856833 B = 5653.034315 C = 6073.545928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.202 3.798 3 N -0.481 5.481 4 C 0.051 3.949 5 C -0.074 4.074 6 C 0.033 3.967 7 C 0.213 3.787 8 N -0.437 5.437 9 C -0.067 4.067 10 C 0.049 3.951 11 C 0.057 3.943 12 C -0.530 4.530 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.889 5.889 16 Si 0.878 3.122 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.264 1.264 20 O -0.190 6.190 21 O -0.189 6.189 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.190 0.810 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 12.276 -7.629 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.004 4.004 3 N -0.211 5.211 4 C -0.072 4.072 5 C -0.131 4.131 6 C -0.021 4.021 7 C 0.012 3.988 8 N -0.169 5.169 9 C -0.207 4.207 10 C -0.005 4.005 11 C 0.019 3.981 12 C -0.568 4.568 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.526 5.526 16 Si 0.704 3.296 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.188 1.188 20 O -0.075 6.075 21 O -0.075 6.075 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.207 0.793 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.026 13.255 -7.511 17.708 hybrid contribution 0.296 -2.265 -0.474 2.333 sum -8.730 10.990 -7.985 16.147 Atomic orbital electron populations 1.20317 0.80800 1.05298 1.04986 1.26355 0.96471 0.78306 0.99296 1.70317 1.01389 1.29831 1.19596 1.21760 0.93456 0.90330 1.01697 1.20294 0.92256 0.97154 1.03415 1.18705 0.79434 0.91060 1.12890 1.21183 0.90461 0.78330 1.08868 1.70476 0.98164 1.32163 1.16140 1.22988 1.01027 0.86280 1.10426 1.24529 0.78745 1.00069 0.97117 1.18539 0.96620 0.82719 1.00179 1.20779 1.47106 0.99297 0.89572 0.90511 1.24920 0.94386 0.97548 0.95822 1.69870 1.45479 1.18494 1.18797 0.86809 0.79463 0.80546 0.82812 1.19649 1.20767 1.18807 1.84588 1.31075 1.22463 1.69413 1.84479 1.15630 1.37237 1.70193 0.88583 0.87854 0.89070 0.90372 0.90767 0.88490 0.79268 0.93960 0.92560 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.20 2.70 8.32 -12.86 -0.11 2.60 16 3 N -0.48 -7.18 11.26 -7.03 -0.08 -7.26 16 4 C 0.05 0.81 7.16 -82.42 -0.59 0.22 16 5 C -0.07 -0.97 9.98 36.00 0.36 -0.61 16 6 C 0.03 0.59 7.30 -36.77 -0.27 0.32 16 7 C 0.21 4.26 8.13 -14.12 -0.11 4.15 16 8 N -0.44 -8.40 9.38 -11.88 -0.11 -8.51 16 9 C -0.07 -1.30 11.79 -17.85 -0.21 -1.51 16 10 C 0.05 1.07 6.57 -35.62 -0.23 0.84 16 11 C 0.06 1.30 4.59 -29.04 -0.13 1.17 16 12 C -0.53 -14.59 9.65 -34.44 -0.33 -14.92 16 13 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 16 Si 0.88 20.09 27.47 -169.99 -4.67 15.42 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 20 O -0.19 -4.20 10.81 3.49 0.04 -4.16 16 21 O -0.19 -3.16 10.80 4.05 0.04 -3.11 16 22 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 1.37 6.58 -51.93 -0.34 1.03 16 28 H 0.19 3.11 8.06 -52.48 -0.42 2.69 16 29 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 30 H 0.06 1.17 7.57 -51.92 -0.39 0.78 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 280.31 15.07 4.22 4.22 Total: -1.00 -31.99 280.31 -4.36 -36.35 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.23 Total: -1.61 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.35 Total: -5.76 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.58 Total: -41.34 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.08 Total: -7.28 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.99 -4.36 -36.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.646 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds