Wall clock time and date at job start Mon Mar 30 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30443 * 125.44356 * 2 1 4 4 C 1.33975 * 108.95676 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.26094 * 180.02562 * 4 3 2 6 6 C 1.36139 * 107.47936 * 359.97438 * 4 3 2 7 7 C 1.47050 * 126.62126 * 180.02562 * 6 4 3 8 8 N 1.31500 * 125.75399 * 359.67366 * 7 6 4 9 9 C 1.34174 * 108.61740 * 179.83640 * 8 7 6 10 10 C 1.34510 * 107.89199 * 0.42762 * 9 8 7 11 11 C 1.50702 * 126.34099 * 179.70989 * 10 9 8 12 12 C 1.50690 * 109.47159 * 90.01088 * 11 10 9 13 13 H 1.08000 * 120.00621 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99904 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00247 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99973 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47303 * 89.99519 * 16 14 12 18 18 H 1.48495 * 109.47076 * 209.99945 * 16 14 12 19 19 H 1.48502 * 109.47014 * 329.99754 * 16 14 12 20 20 O 1.34539 * 125.75969 * 179.97438 * 7 6 4 21 21 O 1.33936 * 125.44702 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.46508 * 270.00333 * 1 2 3 23 23 H 1.09002 * 109.46952 * 29.99544 * 1 2 3 24 24 H 1.08996 * 109.46920 * 150.00284 * 1 2 3 25 25 H 1.09009 * 109.47116 * 269.97110 * 5 4 3 26 26 H 1.09001 * 109.47634 * 29.96751 * 5 4 3 27 27 H 1.09002 * 109.47476 * 149.97092 * 5 4 3 28 28 H 1.08006 * 126.05052 * 180.16753 * 9 8 7 29 29 H 1.08999 * 109.47027 * 210.01807 * 11 10 9 30 30 H 1.09009 * 109.46583 * 330.01249 * 11 10 9 31 31 H 0.96993 * 120.00482 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2635 1.0627 0.0000 4 6 3.5482 0.6825 -0.0006 5 6 4.7476 1.5947 -0.0002 6 6 3.5718 -0.6787 -0.0003 7 6 4.7670 -1.5353 -0.0003 8 7 6.0132 -1.1155 -0.0065 9 6 6.8250 -2.1837 -0.0004 10 6 6.0560 -3.2873 0.0002 11 6 6.5413 -4.7140 0.0000 12 6 6.7038 -5.1895 1.4206 13 1 6.4778 -4.5253 2.2417 14 6 7.1400 -6.4731 1.6724 15 7 7.2813 -6.8883 2.9122 16 14 7.5302 -7.6223 0.2523 17 1 8.9592 -7.4763 -0.1243 18 1 7.2675 -9.0247 0.6639 19 1 6.6741 -7.2794 -0.9116 20 8 4.7701 -2.8807 0.0004 21 8 2.2838 -1.0911 0.0005 22 1 -0.3632 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 5.0369 1.8149 -1.0279 26 1 4.4982 2.5229 0.5138 27 1 5.5756 1.1061 0.5135 28 1 7.9049 -2.1614 -0.0007 29 1 5.8156 -5.3446 -0.5136 30 1 7.5007 -4.7713 -0.5144 31 1 7.5885 -7.7911 3.0893 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:39 Heat of formation + Delta-G solvation = 14.238864 kcal Electronic energy + Delta-G solvation = -17122.382479 eV Core-core repulsion = 14178.342386 eV Total energy + Delta-G solvation = -2944.040093 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.70086 -44.21593 -36.64957 -35.80954 -35.70425 -34.30345 -33.03557 -30.49691 -29.85305 -27.51396 -24.92507 -23.93268 -22.89734 -22.27899 -21.87016 -19.21157 -19.14134 -18.32829 -17.40060 -17.15683 -16.45601 -16.10140 -15.50693 -15.09504 -14.70959 -14.32084 -14.24520 -14.07898 -13.96944 -13.77487 -13.50780 -13.13775 -12.88707 -12.57954 -12.53536 -12.11351 -12.07334 -11.94441 -11.77426 -11.59643 -10.86334 -10.68797 -9.11526 -8.37684 -6.48580 -0.53725 0.74004 1.00234 1.33349 1.38568 1.40262 1.50913 1.59674 1.73977 2.31145 2.80526 2.96458 3.15157 3.54405 3.85372 4.03697 4.14480 4.29126 4.47728 4.60813 4.62460 4.64529 4.72532 4.76892 4.82602 4.89463 5.07336 5.18174 5.19606 5.34958 5.38643 6.09078 6.35247 6.52971 6.55513 7.15295 8.78737 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035042 B = 0.004952 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.856833 B = 5653.034315 C = 6073.545928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.223 3.777 3 N -0.500 5.500 4 C 0.071 3.929 5 C -0.074 4.074 6 C -0.022 4.022 7 C 0.220 3.780 8 N -0.441 5.441 9 C -0.052 4.052 10 C 0.008 3.992 11 C 0.065 3.935 12 C -0.542 4.542 13 H 0.024 0.976 14 C 0.016 3.984 15 N -0.943 5.943 16 Si 0.956 3.044 17 H -0.253 1.253 18 H -0.283 1.283 19 H -0.242 1.242 20 O -0.213 6.213 21 O -0.208 6.208 22 H 0.118 0.882 23 H 0.126 0.874 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.218 0.782 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 13.175 -9.596 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.018 3.982 3 N -0.231 5.231 4 C -0.053 4.053 5 C -0.131 4.131 6 C -0.074 4.074 7 C 0.018 3.982 8 N -0.173 5.173 9 C -0.191 4.191 10 C -0.045 4.045 11 C 0.027 3.973 12 C -0.579 4.579 13 H 0.042 0.958 14 C -0.182 4.182 15 N -0.582 5.582 16 Si 0.777 3.223 17 H -0.177 1.177 18 H -0.208 1.208 19 H -0.166 1.166 20 O -0.100 6.100 21 O -0.096 6.096 22 H 0.136 0.864 23 H 0.145 0.855 24 H 0.128 0.872 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.235 0.765 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.756 14.187 -9.486 19.658 hybrid contribution 0.310 -2.331 0.231 2.363 sum -9.447 11.856 -9.255 17.761 Atomic orbital electron populations 1.20772 0.76547 1.07335 1.06920 1.27765 0.98320 0.77187 0.94967 1.70431 1.00982 1.30224 1.21429 1.22249 0.94685 0.89864 0.98489 1.20402 0.90867 0.97303 1.04518 1.18756 0.79556 0.91529 1.17589 1.21795 0.91644 0.77768 1.06951 1.70542 0.97895 1.31692 1.17129 1.23455 1.02174 0.85590 1.07924 1.24393 0.79120 1.00225 1.00748 1.18373 0.98068 0.83610 0.97215 1.20977 1.47045 0.99016 0.90889 0.95773 1.25974 0.93838 0.99405 0.99027 1.70036 1.47044 1.19329 1.21748 0.85591 0.80415 0.77242 0.79086 1.17667 1.20833 1.16562 1.84544 1.31622 1.23721 1.70094 1.84482 1.15540 1.38672 1.70890 0.86400 0.85521 0.87225 0.88761 0.88693 0.89598 0.76523 0.93684 0.89695 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 71.24 0.75 0.07 16 2 C 0.22 5.57 8.32 88.32 0.74 6.30 16 3 N -0.50 -14.05 11.26 -290.88 -3.28 -17.32 16 4 C 0.07 2.18 7.16 41.74 0.30 2.48 16 5 C -0.07 -1.83 9.98 71.23 0.71 -1.12 16 6 C -0.02 -0.78 7.30 24.09 0.18 -0.60 16 7 C 0.22 8.96 8.13 87.06 0.71 9.67 16 8 N -0.44 -16.93 9.38 -305.36 -2.86 -19.79 16 9 C -0.05 -2.00 11.79 83.48 0.98 -1.02 16 10 C 0.01 0.36 6.57 24.83 0.16 0.52 16 11 C 0.06 2.95 4.59 29.10 0.13 3.09 16 12 C -0.54 -30.79 9.65 25.60 0.25 -30.54 16 13 H 0.02 1.57 7.98 -2.91 -0.02 1.54 16 14 C 0.02 0.91 5.47 84.66 0.46 1.37 16 15 N -0.94 -57.61 13.96 21.45 0.30 -57.31 16 16 Si 0.96 40.94 27.47 68.60 1.88 42.83 16 17 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 20 O -0.21 -9.71 10.81 -10.41 -0.11 -9.82 16 21 O -0.21 -6.87 10.80 -8.43 -0.09 -6.96 16 22 H 0.12 0.97 8.14 -2.39 -0.02 0.96 16 23 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.09 2.36 6.58 -2.39 -0.02 2.34 16 28 H 0.22 6.83 8.06 -2.91 -0.02 6.81 16 29 H 0.04 2.01 7.20 -2.39 -0.02 1.99 16 30 H 0.09 3.37 7.57 -2.38 -0.02 3.35 16 31 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -72.63 280.31 2.31 -70.32 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.10 Total: 7.85 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.37 Total: -9.79 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -5.84 Total: -94.42 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.20 Total: -16.78 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.83 kcal Total: -72.63 2.31 -70.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.560 kcal (2) G-P(sol) polarization free energy of solvation -72.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds