Wall clock time and date at job start Mon Mar 30 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32807 * 125.23020 * 2 1 4 4 C 1.39469 * 115.84156 * 179.88188 * 3 2 1 5 5 C 1.34505 * 113.45059 * 0.48641 * 4 3 2 6 6 S 1.75700 * 125.22502 * 179.97438 * 2 1 3 7 7 C 1.51609 * 125.11596 * 179.39943 * 5 4 3 8 8 H 1.09002 * 109.72387 * 131.30022 * 7 5 4 9 9 C 1.50699 * 109.72784 * 251.92345 * 7 5 4 10 10 H 1.07997 * 120.00476 * 119.37424 * 9 7 5 11 11 C 1.37879 * 119.99854 * 299.37615 * 9 7 5 12 12 N 1.31512 * 119.99986 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00246 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47213 * 59.99361 * 13 11 9 15 15 H 1.48497 * 109.47071 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46801 * 299.99628 * 13 11 9 17 17 C 1.53125 * 108.19839 * 11.61057 * 7 5 4 18 18 C 1.52768 * 117.84698 * 171.77041 * 17 7 5 19 19 C 1.52659 * 118.05819 * 102.63589 * 17 7 5 20 20 C 1.53206 * 114.45103 * 316.89887 * 17 7 5 21 21 C 1.52196 * 122.68386 * 180.85469 * 4 3 2 22 22 H 1.09005 * 109.46833 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47056 * 299.99631 * 1 2 3 24 24 H 1.08993 * 109.46922 * 60.00673 * 1 2 3 25 25 H 1.08003 * 122.07358 * 359.89550 * 3 2 1 26 26 H 0.97001 * 120.00185 * 180.02562 * 12 11 9 27 27 H 1.08996 * 117.51066 * 359.38353 * 18 17 7 28 28 H 1.08997 * 117.50970 * 144.47359 * 18 17 7 29 29 H 1.08997 * 117.50721 * 215.20614 * 19 17 7 30 30 H 1.09003 * 117.49738 * 0.25221 * 19 17 7 31 31 H 1.08999 * 109.53543 * 304.63493 * 20 17 7 32 32 H 1.09003 * 109.61657 * 184.40491 * 20 17 7 33 33 H 1.08997 * 109.45298 * 319.79264 * 21 4 3 34 34 H 1.08996 * 109.45868 * 79.73993 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2731 1.0848 0.0000 4 6 3.6491 0.8573 0.0026 5 6 3.9759 -0.4474 -0.0058 6 16 2.5204 -1.4353 0.0006 7 6 5.3908 -0.9920 -0.0184 8 1 5.4963 -1.7597 0.7482 9 6 5.6978 -1.5792 -1.3718 10 1 6.5057 -1.1764 -1.9647 11 6 4.9473 -2.6308 -1.8534 12 7 3.9639 -3.1217 -1.1313 13 14 5.3283 -3.3593 -3.5308 14 1 6.7199 -3.8774 -3.5410 15 1 4.3840 -4.4697 -3.8142 16 1 5.1833 -2.3093 -4.5709 17 6 6.3510 0.1647 0.2730 18 6 7.8235 -0.1709 0.5028 19 6 6.9441 0.2696 1.6757 20 6 6.0205 1.4649 -0.4669 21 6 4.6689 1.9869 0.0221 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8564 2.0812 -0.0017 26 1 3.4361 -3.8618 -1.4699 27 1 8.1137 -1.2206 0.4575 28 1 8.5649 0.5385 0.1352 29 1 7.1073 1.2686 2.0798 30 1 6.6561 -0.4905 2.4020 31 1 5.9710 1.2720 -1.5385 32 1 6.7928 2.2072 -0.2651 33 1 4.3322 2.7912 -0.6320 34 1 4.7721 2.3654 1.0390 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:10 Heat of formation + Delta-G solvation = 21.858439 kcal Electronic energy + Delta-G solvation = -16308.421819 eV Core-core repulsion = 13911.005350 eV Total energy + Delta-G solvation = -2397.416469 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28280 -37.69126 -35.21862 -33.64866 -31.47826 -30.28600 -26.85825 -25.63626 -23.95057 -23.11663 -21.81740 -20.22352 -18.80533 -17.61586 -17.24113 -16.64723 -15.92243 -15.44473 -14.97248 -14.76623 -14.30966 -14.19161 -13.84626 -13.58946 -13.21921 -12.99285 -12.84764 -12.71190 -12.50671 -12.25820 -12.11027 -12.04035 -11.92476 -11.57942 -11.28693 -10.83057 -10.60454 -10.39012 -10.18941 -8.80780 -8.52293 -7.94714 -6.26876 0.78780 1.37663 1.41751 1.48051 1.56095 2.00784 2.28061 2.41485 3.12661 3.16479 3.96989 4.12319 4.24157 4.33012 4.41319 4.61170 4.64915 4.78091 4.82372 4.85502 4.88131 4.92039 5.03519 5.08155 5.14437 5.20800 5.27068 5.41871 5.45545 5.56110 5.63960 5.70483 5.87578 6.11379 6.19218 6.30165 6.76169 7.33185 8.80288 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.013734 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.934975 B = 2038.191753 C = 3322.252082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.303 4.303 3 C -0.157 4.157 4 C -0.168 4.168 5 C -0.149 4.149 6 S 0.198 5.802 7 C 0.139 3.861 8 H -0.001 1.001 9 C -0.492 4.492 10 H 0.061 0.939 11 C 0.008 3.992 12 N -0.892 5.892 13 Si 0.960 3.040 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.278 1.278 17 C -0.112 4.112 18 C -0.166 4.166 19 C -0.172 4.172 20 C -0.068 4.068 21 C -0.036 4.036 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.124 0.876 26 H 0.274 0.726 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 6.958 2.485 7.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.421 4.421 3 C -0.188 4.188 4 C -0.180 4.180 5 C -0.269 4.269 6 S 0.466 5.534 7 C 0.119 3.881 8 H 0.017 0.983 9 C -0.530 4.530 10 H 0.079 0.921 11 C -0.189 4.189 12 N -0.534 5.534 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.203 1.203 17 C -0.113 4.113 18 C -0.203 4.203 19 C -0.209 4.209 20 C -0.106 4.106 21 C -0.075 4.075 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.141 0.859 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.756 5.189 2.463 5.793 hybrid contribution 0.258 0.661 -0.970 1.202 sum -0.498 5.850 1.494 6.058 Atomic orbital electron populations 1.20097 0.87684 1.01891 1.02256 1.26017 1.01905 1.02703 1.11477 1.19779 0.92539 0.98637 1.07865 1.19645 0.94516 0.93916 1.09881 1.25355 1.00132 0.95739 1.05630 1.85473 0.94698 1.04056 1.69195 1.17013 0.85488 0.90563 0.95062 0.98337 1.21453 1.14545 1.13997 1.03012 0.92109 1.25660 0.94849 0.97389 1.00975 1.68481 1.19947 1.25521 1.39418 0.85547 0.78256 0.77838 0.79781 1.19430 1.20715 1.20335 1.21366 0.94687 0.97046 0.98243 1.22859 0.93351 1.01398 1.02687 1.22972 1.04452 1.02468 0.90977 1.20953 0.96853 0.94097 0.98665 1.20250 0.92101 0.94091 1.01092 0.92374 0.90498 0.91443 0.85857 0.91525 0.90570 0.87448 0.87171 0.90661 0.93441 0.89884 0.90819 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.94 10.37 71.24 0.74 -1.20 16 2 C -0.30 -12.51 6.49 24.51 0.16 -12.36 16 3 C -0.16 -6.46 9.83 21.39 0.21 -6.25 16 4 C -0.17 -7.33 5.77 -19.94 -0.11 -7.44 16 5 C -0.15 -7.34 5.48 25.12 0.14 -7.21 16 6 S 0.20 9.52 19.29 -56.49 -1.09 8.43 16 7 C 0.14 6.91 2.26 -11.95 -0.03 6.88 16 8 H 0.00 -0.07 8.03 -2.39 -0.02 -0.09 16 9 C -0.49 -26.06 8.30 25.60 0.21 -25.85 16 10 H 0.06 3.18 7.75 -2.91 -0.02 3.16 16 11 C 0.01 0.43 5.30 84.66 0.45 0.88 16 12 N -0.89 -48.24 8.97 21.45 0.19 -48.05 16 13 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 C -0.11 -4.48 1.26 -52.26 -0.07 -4.54 16 18 C -0.17 -5.80 9.84 30.54 0.30 -5.50 16 19 C -0.17 -5.83 9.95 30.51 0.30 -5.53 16 20 C -0.07 -2.44 5.57 30.64 0.17 -2.27 16 21 C -0.04 -1.27 6.11 30.30 0.19 -1.09 16 22 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 26 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.11 3.14 8.14 -2.39 -0.02 3.13 16 29 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.07 2.69 8.13 -2.39 -0.02 2.67 16 31 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 32 H 0.08 2.38 8.11 -2.39 -0.02 2.36 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -58.15 287.24 4.86 -53.29 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.07 Total: 13.06 kcal Atomic # 6 Polarization: -74.13 SS G_CDS: 2.66 Total: -71.47 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.19 Total: -48.05 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 9.52 SS G_CDS: -1.09 Total: 8.43 kcal Total: -58.15 4.86 -53.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.149 kcal (2) G-P(sol) polarization free energy of solvation -58.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds