Wall clock time and date at job start Mon Mar 30 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32800 * 125.22008 * 2 1 4 4 C 1.39511 * 115.83691 * 180.14878 * 3 2 1 5 5 C 1.34500 * 113.41830 * 359.62549 * 4 3 2 6 6 S 1.75688 * 125.22005 * 180.02562 * 2 1 3 7 7 C 1.51659 * 125.06119 * 180.41043 * 5 4 3 8 8 H 1.09002 * 109.77864 * 228.02860 * 7 5 4 9 9 C 1.50704 * 109.77616 * 107.28099 * 7 5 4 10 10 H 1.08003 * 119.99469 * 240.75304 * 9 7 5 11 11 C 1.37873 * 120.00159 * 60.75535 * 9 7 5 12 12 N 1.31516 * 119.99753 * 359.97438 * 11 9 7 13 13 Si 1.86792 * 119.99957 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.47401 * 89.99900 * 13 11 9 15 15 H 1.48506 * 109.47317 * 209.99622 * 13 11 9 16 16 H 1.48495 * 109.47590 * 329.99800 * 13 11 9 17 17 C 1.53185 * 107.93683 * 347.65646 * 7 5 4 18 18 C 1.52735 * 117.85413 * 259.10616 * 17 7 5 19 19 C 1.52622 * 118.04567 * 189.96343 * 17 7 5 20 20 C 1.53197 * 114.34805 * 44.13710 * 17 7 5 21 21 C 1.52206 * 122.60088 * 179.26368 * 4 3 2 22 22 H 1.08993 * 109.47257 * 89.99694 * 1 2 3 23 23 H 1.09002 * 109.46757 * 210.00206 * 1 2 3 24 24 H 1.08998 * 109.46853 * 329.99416 * 1 2 3 25 25 H 1.07998 * 122.08253 * 0.12784 * 3 2 1 26 26 H 0.97001 * 119.99851 * 179.97438 * 12 11 9 27 27 H 1.08998 * 117.51163 * 359.39655 * 18 17 7 28 28 H 1.08997 * 117.50629 * 144.48829 * 18 17 7 29 29 H 1.08997 * 117.50200 * 215.22286 * 19 17 7 30 30 H 1.09006 * 117.50659 * 0.26433 * 19 17 7 31 31 H 1.09001 * 109.55064 * 175.20077 * 20 17 7 32 32 H 1.08997 * 109.62482 * 54.94037 * 20 17 7 33 33 H 1.08998 * 109.44690 * 281.12185 * 21 4 3 34 34 H 1.08997 * 109.44512 * 41.01994 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2730 1.0849 0.0000 4 6 3.6494 0.8574 -0.0033 5 6 3.9756 -0.4474 0.0022 6 16 2.5203 -1.4353 -0.0006 7 6 5.3912 -0.9915 0.0092 8 1 5.4923 -1.7666 -0.7505 9 6 5.7109 -1.5633 1.3664 10 1 6.5226 -1.1518 1.9481 11 6 4.9673 -2.6116 1.8654 12 7 3.9787 -3.1122 1.1572 13 14 5.3641 -3.3208 3.5473 14 1 4.5846 -2.5993 4.5853 15 1 5.0077 -4.7622 3.5735 16 1 6.8153 -3.1647 3.8206 17 6 6.3435 0.1672 -0.3025 18 6 6.8894 0.2795 -1.7245 19 6 7.8072 -0.1624 -0.5822 20 6 6.0260 1.4649 0.4473 21 6 4.6675 1.9888 -0.0202 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.8562 2.0812 0.0020 26 1 3.4557 -3.8500 1.5081 27 1 6.5801 -0.4788 -2.4439 28 1 7.0362 1.2806 -2.1298 29 1 8.5581 0.5479 -0.2363 30 1 8.1021 -1.2113 -0.5503 31 1 6.7960 2.2066 0.2349 32 1 5.9928 1.2697 1.5191 33 1 4.7586 2.3798 -1.0335 34 1 4.3366 2.7847 0.6469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:13 Heat of formation + Delta-G solvation = 32.810884 kcal Electronic energy + Delta-G solvation = -16308.493060 eV Core-core repulsion = 13911.551525 eV Total energy + Delta-G solvation = -2396.941535 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.69892 -36.08393 -33.35196 -32.10135 -29.81173 -28.66545 -25.07243 -24.07224 -22.21760 -21.66766 -20.22606 -18.62070 -16.95625 -15.96643 -15.51186 -14.85919 -14.32099 -13.83422 -13.37259 -13.15459 -12.85392 -12.50493 -12.24421 -12.07923 -11.51657 -11.33099 -11.30565 -10.96088 -10.88038 -10.75612 -10.46257 -10.34111 -10.24371 -9.89564 -9.56914 -9.28999 -8.82697 -8.66088 -8.56131 -7.02377 -6.76535 -6.05575 -4.28181 2.51154 3.17087 3.25714 3.29886 3.31199 3.73589 3.97030 4.28299 4.65123 5.08417 5.44122 5.63668 5.69444 5.82227 5.91649 6.01311 6.10644 6.15379 6.27175 6.30986 6.37440 6.40925 6.46602 6.51994 6.59631 6.74748 6.85195 6.96348 6.98303 7.14003 7.36872 7.53751 7.71815 7.80227 7.95102 8.13696 8.71330 9.30752 10.75386 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.013700 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.297532 B = 2043.240309 C = 3317.559370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.312 4.312 3 C -0.140 4.140 4 C -0.169 4.169 5 C -0.114 4.114 6 S 0.249 5.751 7 C 0.137 3.863 8 H 0.039 0.961 9 C -0.474 4.474 10 H 0.067 0.933 11 C 0.050 3.950 12 N -0.877 5.877 13 Si 0.907 3.093 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.086 4.086 18 C -0.189 4.189 19 C -0.172 4.172 20 C -0.075 4.075 21 C -0.036 4.036 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.275 0.725 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 4.812 -2.595 5.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.430 4.430 3 C -0.172 4.172 4 C -0.180 4.180 5 C -0.234 4.234 6 S 0.517 5.483 7 C 0.117 3.883 8 H 0.057 0.943 9 C -0.512 4.512 10 H 0.085 0.915 11 C -0.149 4.149 12 N -0.518 5.518 13 Si 0.735 3.265 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.088 4.088 18 C -0.226 4.226 19 C -0.209 4.209 20 C -0.112 4.112 21 C -0.076 4.076 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.782 3.047 -2.561 4.056 hybrid contribution 0.305 1.325 1.031 1.706 sum -0.477 4.371 -1.530 4.656 Atomic orbital electron populations 1.20000 0.90619 1.00887 1.00497 1.25597 0.99926 1.04105 1.13326 1.19498 0.92793 0.97322 1.07565 1.19089 0.93054 0.93646 1.12244 1.25288 1.00340 0.94895 1.02907 1.85442 0.93078 1.01857 1.67923 1.17241 0.83909 0.90011 0.97111 0.94298 1.21283 1.14324 1.13582 1.01973 0.91468 1.24966 0.94827 0.96826 0.98269 1.68314 1.19570 1.25369 1.38565 0.86307 0.78846 0.78174 0.83217 1.20497 1.20929 1.19683 1.21406 0.94598 0.97489 0.95292 1.22940 1.06052 1.01247 0.92386 1.22788 0.93552 1.01512 1.03065 1.20988 0.95706 0.94159 1.00362 1.20130 0.93021 0.94887 0.99514 0.92761 0.92770 0.93140 0.88463 0.91318 0.89605 0.90135 0.90153 0.88967 0.93359 0.91173 0.92816 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.37 36.01 0.37 -0.68 16 2 C -0.31 -6.63 6.49 -36.17 -0.23 -6.86 16 3 C -0.14 -3.02 9.83 -40.97 -0.40 -3.42 16 4 C -0.17 -3.78 5.77 -104.72 -0.60 -4.39 16 5 C -0.11 -2.77 5.47 -35.16 -0.19 -2.96 16 6 S 0.25 5.84 19.36 -107.50 -2.08 3.76 16 7 C 0.14 3.32 2.26 -92.35 -0.21 3.11 16 8 H 0.04 1.02 8.04 -51.93 -0.42 0.60 16 9 C -0.47 -12.17 8.29 -34.44 -0.29 -12.46 16 10 H 0.07 1.72 7.75 -52.48 -0.41 1.31 16 11 C 0.05 1.28 5.31 -17.82 -0.09 1.19 16 12 N -0.88 -22.87 9.04 55.43 0.50 -22.37 16 13 Si 0.91 20.46 29.54 -169.99 -5.02 15.43 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 17 C -0.09 -1.76 1.23 -154.64 -0.19 -1.95 16 18 C -0.19 -3.38 9.95 -26.84 -0.27 -3.64 16 19 C -0.17 -3.11 9.89 -26.89 -0.27 -3.38 16 20 C -0.07 -1.42 5.58 -26.67 -0.15 -1.57 16 21 C -0.04 -0.69 6.10 -27.18 -0.17 -0.85 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 26 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.07 1.43 8.02 -51.93 -0.42 1.02 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 287.33 15.07 4.33 4.33 Total: -1.00 -26.54 287.33 -9.98 -36.53 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.02 Total: 0.19 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: -2.69 Total: -37.87 kcal Atomic # 7 Polarization: -22.87 SS G_CDS: 0.50 Total: -22.37 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -2.08 Total: 3.76 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.54 -9.98 -36.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.337 kcal (2) G-P(sol) polarization free energy of solvation -26.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds