Wall clock time and date at job start Mon Mar 30 2020 05:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32800 * 125.22008 * 2 1 4 4 C 1.39511 * 115.83691 * 180.14878 * 3 2 1 5 5 C 1.34500 * 113.41830 * 359.62549 * 4 3 2 6 6 S 1.75688 * 125.22005 * 180.02562 * 2 1 3 7 7 C 1.51659 * 125.06119 * 180.41043 * 5 4 3 8 8 H 1.09002 * 109.77864 * 228.02860 * 7 5 4 9 9 C 1.50704 * 109.77616 * 107.28099 * 7 5 4 10 10 H 1.08003 * 119.99469 * 240.75304 * 9 7 5 11 11 C 1.37873 * 120.00159 * 60.75535 * 9 7 5 12 12 N 1.31516 * 119.99753 * 359.97438 * 11 9 7 13 13 Si 1.86792 * 119.99957 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.47401 * 89.99900 * 13 11 9 15 15 H 1.48506 * 109.47317 * 209.99622 * 13 11 9 16 16 H 1.48495 * 109.47590 * 329.99800 * 13 11 9 17 17 C 1.53185 * 107.93683 * 347.65646 * 7 5 4 18 18 C 1.52735 * 117.85413 * 259.10616 * 17 7 5 19 19 C 1.52622 * 118.04567 * 189.96343 * 17 7 5 20 20 C 1.53197 * 114.34805 * 44.13710 * 17 7 5 21 21 C 1.52206 * 122.60088 * 179.26368 * 4 3 2 22 22 H 1.08993 * 109.47257 * 89.99694 * 1 2 3 23 23 H 1.09002 * 109.46757 * 210.00206 * 1 2 3 24 24 H 1.08998 * 109.46853 * 329.99416 * 1 2 3 25 25 H 1.07998 * 122.08253 * 0.12784 * 3 2 1 26 26 H 0.97001 * 119.99851 * 179.97438 * 12 11 9 27 27 H 1.08998 * 117.51163 * 359.39655 * 18 17 7 28 28 H 1.08997 * 117.50629 * 144.48829 * 18 17 7 29 29 H 1.08997 * 117.50200 * 215.22286 * 19 17 7 30 30 H 1.09006 * 117.50659 * 0.26433 * 19 17 7 31 31 H 1.09001 * 109.55064 * 175.20077 * 20 17 7 32 32 H 1.08997 * 109.62482 * 54.94037 * 20 17 7 33 33 H 1.08998 * 109.44690 * 281.12185 * 21 4 3 34 34 H 1.08997 * 109.44512 * 41.01994 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2730 1.0849 0.0000 4 6 3.6494 0.8574 -0.0033 5 6 3.9756 -0.4474 0.0022 6 16 2.5203 -1.4353 -0.0006 7 6 5.3912 -0.9915 0.0092 8 1 5.4923 -1.7666 -0.7505 9 6 5.7109 -1.5633 1.3664 10 1 6.5226 -1.1518 1.9481 11 6 4.9673 -2.6116 1.8654 12 7 3.9787 -3.1122 1.1572 13 14 5.3641 -3.3208 3.5473 14 1 4.5846 -2.5993 4.5853 15 1 5.0077 -4.7622 3.5735 16 1 6.8153 -3.1647 3.8206 17 6 6.3435 0.1672 -0.3025 18 6 6.8894 0.2795 -1.7245 19 6 7.8072 -0.1624 -0.5822 20 6 6.0260 1.4649 0.4473 21 6 4.6675 1.9888 -0.0202 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.8562 2.0812 0.0020 26 1 3.4557 -3.8500 1.5081 27 1 6.5801 -0.4788 -2.4439 28 1 7.0362 1.2806 -2.1298 29 1 8.5581 0.5479 -0.2363 30 1 8.1021 -1.2113 -0.5503 31 1 6.7960 2.2066 0.2349 32 1 5.9928 1.2697 1.5191 33 1 4.7586 2.3798 -1.0335 34 1 4.3366 2.7847 0.6469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:12 Heat of formation + Delta-G solvation = 21.804694 kcal Electronic energy + Delta-G solvation = -16308.970324 eV Core-core repulsion = 13911.551525 eV Total energy + Delta-G solvation = -2397.418799 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29155 -37.69355 -35.20948 -33.64754 -31.47735 -30.29074 -26.85793 -25.63796 -23.94904 -23.11601 -21.82705 -20.22805 -18.81266 -17.61522 -17.24573 -16.64879 -15.91951 -15.44640 -14.96916 -14.76342 -14.32344 -14.19938 -13.82539 -13.57977 -13.22769 -12.99264 -12.84314 -12.73098 -12.51206 -12.25399 -12.11467 -12.03464 -11.91397 -11.57490 -11.27913 -10.83008 -10.60895 -10.39830 -10.19277 -8.82351 -8.52623 -7.94861 -6.26541 0.77877 1.36781 1.41400 1.49348 1.54598 2.00280 2.27550 2.41435 3.12850 3.16703 3.96740 4.12683 4.23943 4.32320 4.41490 4.60962 4.65552 4.76884 4.82174 4.85060 4.88109 4.92192 5.03508 5.08116 5.14240 5.20608 5.26511 5.41941 5.45494 5.55960 5.63683 5.70604 5.87148 6.10911 6.19324 6.29700 6.76675 7.33843 8.81065 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.013700 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.297532 B = 2043.240309 C = 3317.559370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.301 4.301 3 C -0.156 4.156 4 C -0.168 4.168 5 C -0.147 4.147 6 S 0.193 5.807 7 C 0.139 3.861 8 H -0.001 1.001 9 C -0.492 4.492 10 H 0.061 0.939 11 C 0.008 3.992 12 N -0.893 5.893 13 Si 0.959 3.041 14 H -0.282 1.282 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.112 4.112 18 C -0.173 4.173 19 C -0.165 4.165 20 C -0.069 4.069 21 C -0.036 4.036 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.125 0.875 26 H 0.273 0.727 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 7.042 -2.599 7.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.419 4.419 3 C -0.186 4.186 4 C -0.180 4.180 5 C -0.266 4.266 6 S 0.461 5.539 7 C 0.119 3.881 8 H 0.017 0.983 9 C -0.530 4.530 10 H 0.079 0.921 11 C -0.189 4.189 12 N -0.534 5.534 13 Si 0.785 3.215 14 H -0.209 1.209 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.113 4.113 18 C -0.210 4.210 19 C -0.202 4.202 20 C -0.106 4.106 21 C -0.075 4.075 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.143 0.857 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.802 5.277 -2.575 5.926 hybrid contribution 0.243 0.652 0.970 1.194 sum -0.558 5.929 -1.605 6.168 Atomic orbital electron populations 1.20115 0.87619 1.02134 1.02144 1.25941 1.01880 1.02451 1.11625 1.19830 0.92545 0.98622 1.07642 1.19658 0.94521 0.93923 1.09909 1.25369 1.00095 0.95704 1.05441 1.85421 0.94787 1.04301 1.69420 1.17045 0.85462 0.90551 0.95069 0.98324 1.21461 1.14445 1.14251 1.02876 0.92121 1.25659 0.94876 0.97314 1.01018 1.68573 1.19927 1.25483 1.39395 0.85502 0.78693 0.77495 0.79775 1.20852 1.20592 1.19129 1.21366 0.95157 0.97087 0.97726 1.22977 1.04457 1.02433 0.91127 1.22835 0.93044 1.01427 1.02886 1.20952 0.96816 0.94101 0.98715 1.20248 0.92064 0.94042 1.01147 0.90827 0.92357 0.91021 0.85750 0.91621 0.90693 0.87196 0.87423 0.90559 0.89898 0.93374 0.90875 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.96 10.37 71.24 0.74 -1.22 16 2 C -0.30 -12.40 6.49 24.51 0.16 -12.24 16 3 C -0.16 -6.37 9.83 21.40 0.21 -6.16 16 4 C -0.17 -7.33 5.77 -19.93 -0.11 -7.45 16 5 C -0.15 -7.21 5.47 25.14 0.14 -7.08 16 6 S 0.19 9.27 19.36 -56.49 -1.09 8.18 16 7 C 0.14 6.90 2.26 -11.92 -0.03 6.88 16 8 H 0.00 -0.07 8.04 -2.39 -0.02 -0.09 16 9 C -0.49 -26.10 8.29 25.60 0.21 -25.89 16 10 H 0.06 3.19 7.75 -2.91 -0.02 3.16 16 11 C 0.01 0.44 5.31 84.65 0.45 0.89 16 12 N -0.89 -48.36 9.04 21.45 0.19 -48.16 16 13 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 C -0.11 -4.47 1.23 -52.27 -0.06 -4.53 16 18 C -0.17 -5.88 9.95 30.53 0.30 -5.57 16 19 C -0.16 -5.75 9.89 30.49 0.30 -5.45 16 20 C -0.07 -2.45 5.58 30.63 0.17 -2.27 16 21 C -0.04 -1.26 6.10 30.31 0.18 -1.07 16 22 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 26 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 32 H 0.05 1.91 8.02 -2.39 -0.02 1.89 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -58.32 287.33 4.86 -53.46 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.07 Total: 12.88 kcal Atomic # 6 Polarization: -73.82 SS G_CDS: 2.66 Total: -71.16 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.19 Total: -48.16 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 9.27 SS G_CDS: -1.09 Total: 8.18 kcal Total: -58.32 4.86 -53.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.263 kcal (2) G-P(sol) polarization free energy of solvation -58.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds