Wall clock time and date at job start Mon Mar 30 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99654 * 2 1 4 4 H 1.48498 * 109.47092 * 270.00192 * 3 2 1 5 5 H 1.48493 * 109.47323 * 30.00644 * 3 2 1 6 6 H 1.48509 * 109.46803 * 150.00396 * 3 2 1 7 7 C 1.37874 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99833 * 179.97438 * 7 2 1 10 10 H 1.09006 * 110.01616 * 59.93439 * 9 7 2 11 11 C 1.53869 * 110.03081 * 298.54227 * 9 7 2 12 12 C 1.54272 * 106.63700 * 240.69431 * 11 9 7 13 13 C 1.54964 * 104.15978 * 336.44164 * 12 11 9 14 14 H 1.08994 * 110.88079 * 279.50172 * 13 12 11 15 15 O 1.42903 * 110.76338 * 156.22329 * 13 12 11 16 16 C 1.35900 * 116.99904 * 90.48559 * 15 13 12 17 17 C 1.38788 * 120.02832 * 174.38575 * 16 15 13 18 18 C 1.38154 * 120.05383 * 180.02562 * 17 16 15 19 19 C 1.38195 * 120.11141 * 359.95329 * 18 17 16 20 20 C 1.38746 * 120.05409 * 0.04628 * 19 18 17 21 21 O 1.35895 * 120.02663 * 180.02562 * 20 19 18 22 22 C 1.38617 * 120.02645 * 354.11177 * 16 15 13 23 23 C 1.54265 * 110.02918 * 181.37257 * 9 7 2 24 24 H 0.96999 * 120.00106 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.03593 * 359.97438 * 11 9 7 26 26 H 1.08994 * 110.03259 * 121.38677 * 11 9 7 27 27 H 1.08998 * 110.48880 * 95.09340 * 12 11 9 28 28 H 1.08999 * 110.48564 * 217.73571 * 12 11 9 29 29 H 1.08000 * 119.97426 * 359.97438 * 17 16 15 30 30 H 1.08002 * 119.94294 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.97113 * 180.02562 * 19 18 17 32 32 H 0.96698 * 113.99993 * 90.00383 * 21 20 19 33 33 H 1.08001 * 120.05389 * 0.02562 * 22 16 15 34 34 H 1.08997 * 110.48771 * 261.56967 * 23 9 7 35 35 H 1.08996 * 110.48890 * 24.08404 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8850 -0.6810 0.8853 11 6 4.0381 -0.5029 -1.2711 12 6 4.8688 -1.5552 -2.0344 13 6 5.2948 -2.5676 -0.9412 14 1 6.1531 -2.1965 -0.3813 15 8 5.5815 -3.8438 -1.5167 16 6 6.8640 -4.0719 -1.9041 17 6 7.2383 -5.3274 -2.3621 18 6 8.5421 -5.5600 -2.7555 19 6 9.4764 -4.5435 -2.6950 20 6 9.1071 -3.2866 -2.2379 21 8 10.0261 -2.2873 -2.1791 22 6 7.7980 -3.0492 -1.8474 23 6 4.0399 -2.6429 -0.0364 24 1 -0.4850 0.8400 0.0004 25 1 3.2037 -0.1680 -1.8873 26 1 4.6671 0.3452 -1.0011 27 1 4.2587 -2.0465 -2.7922 28 1 5.7448 -1.0928 -2.4893 29 1 6.5101 -6.1234 -2.4103 30 1 8.8315 -6.5378 -3.1113 31 1 10.4949 -4.7277 -3.0035 32 1 10.0848 -1.7589 -2.9868 33 1 7.5077 -2.0704 -1.4950 34 1 4.3116 -2.9744 0.9658 35 1 3.2947 -3.3103 -0.4690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259986332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:55 Heat of formation + Delta-G solvation = -63.688290 kcal Electronic energy + Delta-G solvation = -17721.186733 eV Core-core repulsion = 14877.307808 eV Total energy + Delta-G solvation = -2843.878924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34592 -38.65534 -36.91200 -35.66250 -32.35015 -30.35017 -29.71850 -28.58474 -27.67188 -23.96741 -22.62248 -22.38436 -20.27136 -19.29607 -18.82189 -17.20613 -16.56784 -16.04739 -15.91387 -15.43435 -14.83318 -14.42990 -14.33371 -13.78098 -13.61829 -12.96323 -12.44177 -12.37922 -12.21217 -12.01437 -11.58458 -11.28738 -10.84998 -10.72012 -10.55680 -10.36327 -10.23239 -9.98279 -9.87649 -9.48724 -8.99859 -8.90471 -8.58791 -8.13447 -6.09530 -4.08647 1.14294 1.34919 3.25675 3.34785 3.36187 3.41034 3.55595 4.08427 4.39064 4.81560 4.98410 5.02810 5.11059 5.19577 5.29601 5.36517 5.42156 5.52287 5.71908 5.82101 6.14390 6.22934 6.24556 6.28065 6.31067 6.35649 6.40303 6.59432 6.61025 6.76610 6.82003 7.11506 7.37941 7.47023 7.67219 7.74933 8.49749 8.94447 9.52362 11.03563 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.040696 B = 0.005112 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.861518 B = 5475.920768 C = 5984.109030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.013 3.987 10 H 0.033 0.967 11 C -0.132 4.132 12 C -0.135 4.135 13 C 0.071 3.929 14 H 0.075 0.925 15 O -0.301 6.301 16 C 0.159 3.841 17 C -0.168 4.168 18 C -0.066 4.066 19 C -0.194 4.194 20 C 0.142 3.858 21 O -0.501 6.501 22 C -0.239 4.239 23 C -0.096 4.096 24 H 0.264 0.736 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.391 0.609 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.663 -6.446 -6.372 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.006 4.006 10 H 0.051 0.949 11 C -0.170 4.170 12 C -0.172 4.172 13 C 0.015 3.985 14 H 0.093 0.907 15 O -0.214 6.214 16 C 0.112 3.888 17 C -0.187 4.187 18 C -0.085 4.085 19 C -0.213 4.213 20 C 0.098 3.902 21 O -0.311 6.311 22 C -0.259 4.259 23 C -0.133 4.133 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.247 0.753 33 H 0.155 0.845 34 H 0.077 0.923 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.402 -6.647 -5.803 19.511 hybrid contribution 0.442 1.456 -0.487 1.598 sum 17.844 -5.191 -6.290 19.619 Atomic orbital electron populations 1.69901 1.06277 1.26943 1.50778 1.25003 0.94659 0.98993 0.94486 0.86942 0.80249 0.83772 0.78439 1.20270 1.21939 1.18897 1.21071 0.88359 0.94542 1.50839 0.90671 1.19710 0.97208 0.90545 0.93157 0.94902 1.22647 0.98528 0.96523 0.99337 1.22782 0.99475 0.96979 0.97996 1.23892 0.99015 0.80719 0.94866 0.90706 1.86191 1.23344 1.37342 1.74516 1.18966 0.84073 0.93153 0.92603 1.20519 0.97120 0.95407 1.05635 1.20786 0.91914 0.98679 0.97081 1.21239 1.00490 0.93519 1.06020 1.18203 0.87075 0.88145 0.96826 1.84793 1.58369 1.45748 1.42194 1.21639 0.93415 1.00909 1.09890 1.22423 0.93772 1.00299 0.96855 0.92647 0.90735 0.93931 0.90604 0.92771 0.84956 0.85127 0.85647 0.75305 0.84488 0.92285 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 2 C 0.07 1.99 5.33 -17.82 -0.09 1.89 16 3 Si 0.88 21.32 24.59 -169.99 -4.18 17.14 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.12 6.44 56.52 0.36 -5.76 16 7 C -0.51 -14.06 8.92 -34.44 -0.31 -14.36 16 8 H 0.08 2.25 7.80 -52.49 -0.41 1.84 16 9 C 0.01 0.29 2.40 -90.65 -0.22 0.07 16 10 H 0.03 0.76 7.22 -51.93 -0.37 0.39 16 11 C -0.13 -2.75 4.46 -25.61 -0.11 -2.86 16 12 C -0.13 -2.37 6.39 -25.03 -0.16 -2.53 16 13 C 0.07 1.22 2.68 -24.70 -0.07 1.15 16 14 H 0.08 1.21 6.27 -51.93 -0.33 0.88 16 15 O -0.30 -5.10 9.92 -19.42 -0.19 -5.29 16 16 C 0.16 2.35 6.67 -39.24 -0.26 2.09 16 17 C -0.17 -2.12 9.98 -39.41 -0.39 -2.51 16 18 C -0.07 -0.70 10.04 -39.63 -0.40 -1.10 16 19 C -0.19 -2.12 9.98 -39.41 -0.39 -2.52 16 20 C 0.14 1.77 6.70 -39.24 -0.26 1.50 16 21 O -0.50 -5.52 13.50 -19.41 -0.26 -5.78 16 22 C -0.24 -3.34 8.84 -39.29 -0.35 -3.69 16 23 C -0.10 -1.90 6.07 -25.07 -0.15 -2.05 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.07 1.68 6.41 -51.93 -0.33 1.35 16 26 H 0.04 0.83 7.39 -51.93 -0.38 0.44 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.05 0.83 7.70 -51.93 -0.40 0.43 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.39 2.39 9.06 45.56 0.41 2.80 16 33 H 0.14 1.92 5.55 -52.49 -0.29 1.63 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.65 7.68 -51.93 -0.40 1.25 16 LS Contribution 284.93 15.07 4.29 4.29 Total: -1.00 -31.08 284.93 -6.52 -37.61 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.79 Total: 3.47 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -3.17 Total: -24.91 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.77 Total: -26.53 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.45 Total: -11.07 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.18 Total: 17.14 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.08 -6.52 -37.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.079 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds