Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99654 * 2 1 4 4 H 1.48498 * 109.47092 * 270.00192 * 3 2 1 5 5 H 1.48493 * 109.47323 * 30.00644 * 3 2 1 6 6 H 1.48509 * 109.46803 * 150.00396 * 3 2 1 7 7 C 1.37874 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99833 * 179.97438 * 7 2 1 10 10 H 1.09006 * 110.01616 * 59.93439 * 9 7 2 11 11 C 1.53869 * 110.03081 * 298.54227 * 9 7 2 12 12 C 1.54272 * 106.63700 * 240.69431 * 11 9 7 13 13 C 1.54964 * 104.15978 * 336.44164 * 12 11 9 14 14 H 1.08994 * 110.88079 * 279.50172 * 13 12 11 15 15 O 1.42903 * 110.76338 * 156.22329 * 13 12 11 16 16 C 1.35900 * 116.99904 * 90.48559 * 15 13 12 17 17 C 1.38788 * 120.02832 * 174.38575 * 16 15 13 18 18 C 1.38154 * 120.05383 * 180.02562 * 17 16 15 19 19 C 1.38195 * 120.11141 * 359.95329 * 18 17 16 20 20 C 1.38746 * 120.05409 * 0.04628 * 19 18 17 21 21 O 1.35895 * 120.02663 * 180.02562 * 20 19 18 22 22 C 1.38617 * 120.02645 * 354.11177 * 16 15 13 23 23 C 1.54265 * 110.02918 * 181.37257 * 9 7 2 24 24 H 0.96999 * 120.00106 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.03593 * 359.97438 * 11 9 7 26 26 H 1.08994 * 110.03259 * 121.38677 * 11 9 7 27 27 H 1.08998 * 110.48880 * 95.09340 * 12 11 9 28 28 H 1.08999 * 110.48564 * 217.73571 * 12 11 9 29 29 H 1.08000 * 119.97426 * 359.97438 * 17 16 15 30 30 H 1.08002 * 119.94294 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.97113 * 180.02562 * 19 18 17 32 32 H 0.96698 * 113.99993 * 90.00383 * 21 20 19 33 33 H 1.08001 * 120.05389 * 0.02562 * 22 16 15 34 34 H 1.08997 * 110.48771 * 261.56967 * 23 9 7 35 35 H 1.08996 * 110.48890 * 24.08404 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8850 -0.6810 0.8853 11 6 4.0381 -0.5029 -1.2711 12 6 4.8688 -1.5552 -2.0344 13 6 5.2948 -2.5676 -0.9412 14 1 6.1531 -2.1965 -0.3813 15 8 5.5815 -3.8438 -1.5167 16 6 6.8640 -4.0719 -1.9041 17 6 7.2383 -5.3274 -2.3621 18 6 8.5421 -5.5600 -2.7555 19 6 9.4764 -4.5435 -2.6950 20 6 9.1071 -3.2866 -2.2379 21 8 10.0261 -2.2873 -2.1791 22 6 7.7980 -3.0492 -1.8474 23 6 4.0399 -2.6429 -0.0364 24 1 -0.4850 0.8400 0.0004 25 1 3.2037 -0.1680 -1.8873 26 1 4.6671 0.3452 -1.0011 27 1 4.2587 -2.0465 -2.7922 28 1 5.7448 -1.0928 -2.4893 29 1 6.5101 -6.1234 -2.4103 30 1 8.8315 -6.5378 -3.1113 31 1 10.4949 -4.7277 -3.0035 32 1 10.0848 -1.7589 -2.9868 33 1 7.5077 -2.0704 -1.4950 34 1 4.3116 -2.9744 0.9658 35 1 3.2947 -3.3103 -0.4690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = -85.103954 kcal Electronic energy + Delta-G solvation = -17722.115386 eV Core-core repulsion = 14877.307808 eV Total energy + Delta-G solvation = -2844.807577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41970 -39.76874 -38.18994 -36.78786 -34.43264 -31.29413 -30.90959 -30.16906 -29.15346 -25.75223 -23.75134 -23.37885 -21.63909 -20.95132 -19.92935 -18.71828 -18.00162 -17.26650 -16.87440 -16.68248 -16.40709 -15.82049 -15.54649 -14.97146 -14.81133 -14.74892 -14.07735 -13.75362 -13.56956 -13.08941 -12.84597 -12.75944 -12.35785 -12.22112 -12.04106 -11.76261 -11.68593 -11.60728 -11.37667 -11.29243 -10.96106 -10.73838 -9.81249 -9.14441 -8.29110 -6.33317 0.25411 0.41697 1.34076 1.37269 1.47316 2.22150 2.34739 2.67516 3.04647 3.25314 3.66129 3.76599 3.88765 4.02167 4.13237 4.22495 4.29205 4.49576 4.57065 4.63286 4.70078 4.77815 4.82463 4.91679 4.96236 5.12396 5.19555 5.33726 5.40861 5.42768 5.47281 5.56461 5.74375 5.77559 6.30305 6.45942 6.73102 6.83932 7.31587 8.87826 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.040696 B = 0.005112 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.861518 B = 5475.920768 C = 5984.109030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.011 3.989 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.240 1.240 7 C -0.517 4.517 8 H 0.030 0.970 9 C 0.008 3.992 10 H 0.037 0.963 11 C -0.131 4.131 12 C -0.127 4.127 13 C 0.085 3.915 14 H 0.093 0.907 15 O -0.319 6.319 16 C 0.130 3.870 17 C -0.179 4.179 18 C -0.057 4.057 19 C -0.189 4.189 20 C 0.138 3.862 21 O -0.509 6.509 22 C -0.252 4.252 23 C -0.096 4.096 24 H 0.265 0.735 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.165 0.835 31 H 0.151 0.849 32 H 0.412 0.588 33 H 0.134 0.866 34 H 0.070 0.930 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.429 -6.147 -7.218 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.163 1.163 7 C -0.555 4.555 8 H 0.048 0.952 9 C -0.011 4.011 10 H 0.055 0.945 11 C -0.169 4.169 12 C -0.164 4.164 13 C 0.029 3.971 14 H 0.111 0.889 15 O -0.233 6.233 16 C 0.084 3.916 17 C -0.197 4.197 18 C -0.075 4.075 19 C -0.208 4.208 20 C 0.094 3.906 21 O -0.323 6.323 22 C -0.272 4.272 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.156 0.844 30 H 0.183 0.817 31 H 0.169 0.831 32 H 0.271 0.729 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 21.203 -6.362 -6.668 23.119 hybrid contribution -0.691 1.218 -0.250 1.422 sum 20.512 -5.144 -6.919 22.250 Atomic orbital electron populations 1.70064 1.08385 1.28059 1.52837 1.25915 0.95406 1.03186 0.94094 0.85891 0.79661 0.78399 0.79360 1.18744 1.22206 1.16288 1.21373 0.91195 0.92880 1.50023 0.95195 1.19680 0.93921 0.92921 0.94554 0.94507 1.22503 0.98512 0.97919 0.97980 1.22708 0.99907 0.96212 0.97590 1.23585 0.98049 0.81187 0.94243 0.88931 1.86137 1.25136 1.36771 1.75250 1.19246 0.83326 0.94506 0.94514 1.20787 0.98400 0.94866 1.05662 1.21180 0.90705 1.00110 0.95514 1.21590 1.01737 0.92806 1.04644 1.18332 0.86681 0.89126 0.96509 1.84742 1.57703 1.45869 1.43949 1.21676 0.94162 1.00568 1.10754 1.22292 0.94796 0.98040 0.98287 0.92580 0.93042 0.91748 0.91737 0.89673 0.84379 0.81708 0.83142 0.72850 0.84818 0.91174 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 13.96 21.45 0.30 -59.75 16 2 C 0.01 0.62 5.33 84.65 0.45 1.07 16 3 Si 0.94 43.75 24.59 68.60 1.69 45.44 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.24 -10.09 6.44 99.48 0.64 -9.45 16 7 C -0.52 -29.58 8.92 25.60 0.23 -29.36 16 8 H 0.03 1.91 7.80 -2.91 -0.02 1.89 16 9 C 0.01 0.37 2.40 -10.82 -0.03 0.34 16 10 H 0.04 1.65 7.22 -2.38 -0.02 1.63 16 11 C -0.13 -5.24 4.46 31.32 0.14 -5.10 16 12 C -0.13 -4.25 6.39 31.70 0.20 -4.05 16 13 C 0.09 2.84 2.68 31.91 0.09 2.93 16 14 H 0.09 2.77 6.27 -2.39 -0.01 2.76 16 15 O -0.32 -10.61 9.92 -92.42 -0.92 -11.53 16 16 C 0.13 3.65 6.67 22.49 0.15 3.80 16 17 C -0.18 -4.13 9.98 22.38 0.22 -3.91 16 18 C -0.06 -1.00 10.04 22.24 0.22 -0.78 16 19 C -0.19 -3.41 9.98 22.38 0.22 -3.19 16 20 C 0.14 3.01 6.70 22.49 0.15 3.16 16 21 O -0.51 -9.53 13.50 -92.37 -1.25 -10.78 16 22 C -0.25 -6.48 8.84 22.46 0.20 -6.28 16 23 C -0.10 -3.86 6.07 31.67 0.19 -3.67 16 24 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.05 2.29 6.41 -2.39 -0.02 2.27 16 26 H 0.06 2.29 7.39 -2.39 -0.02 2.27 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 2.34 7.70 -2.39 -0.02 2.33 16 29 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.41 3.62 9.06 -74.06 -0.67 2.95 16 33 H 0.13 3.41 5.55 -2.91 -0.02 3.40 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 2.42 7.68 -2.39 -0.02 2.40 16 Total: -1.00 -69.48 284.93 2.63 -66.85 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.36 Total: 14.80 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 2.44 Total: -45.04 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.30 Total: -59.75 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -2.16 Total: -22.31 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.69 Total: 45.44 kcal Total: -69.48 2.63 -66.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.255 kcal (2) G-P(sol) polarization free energy of solvation -69.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds