Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48496 * 109.47149 * 270.00191 * 3 2 1 5 5 H 1.48504 * 109.47293 * 29.99981 * 3 2 1 6 6 H 1.48498 * 109.47028 * 149.99801 * 3 2 1 7 7 C 1.37874 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99743 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.43673 * 298.90471 * 9 7 2 11 11 C 1.54887 * 110.49027 * 61.44942 * 9 7 2 12 12 C 1.54892 * 102.74892 * 156.61652 * 11 9 7 13 13 C 1.54261 * 104.19863 * 322.06277 * 12 11 9 14 14 H 1.09002 * 110.03417 * 264.27523 * 13 12 11 15 15 O 1.42902 * 110.03522 * 142.89048 * 13 12 11 16 16 C 1.35895 * 116.99642 * 84.22349 * 15 13 12 17 17 C 1.38797 * 120.02451 * 174.82723 * 16 15 13 18 18 C 1.38157 * 120.05459 * 180.02562 * 17 16 15 19 19 C 1.38199 * 120.10980 * 0.02562 * 18 17 16 20 20 C 1.38753 * 120.05258 * 359.97189 * 19 18 17 21 21 O 1.35901 * 120.02692 * 179.97438 * 20 19 18 22 22 C 1.38614 * 120.03043 * 355.10433 * 16 15 13 23 23 C 1.53879 * 106.64136 * 23.58033 * 13 12 11 24 24 H 0.97004 * 119.99717 * 359.97438 * 1 2 3 25 25 H 1.09006 * 110.75191 * 38.31007 * 11 9 7 26 26 H 1.08990 * 110.91718 * 275.01175 * 11 9 7 27 27 H 1.08992 * 110.48878 * 203.37954 * 12 11 9 28 28 H 1.09004 * 110.48363 * 80.74070 * 12 11 9 29 29 H 1.07998 * 119.97239 * 0.02562 * 17 16 15 30 30 H 1.07994 * 119.94932 * 179.97438 * 18 17 16 31 31 H 1.07995 * 119.97427 * 180.02562 * 19 18 17 32 32 H 0.96693 * 113.99930 * 90.00413 * 21 20 19 33 33 H 1.07998 * 120.05223 * 359.97438 * 22 16 15 34 34 H 1.09003 * 110.03176 * 119.31129 * 23 13 12 35 35 H 1.09001 * 110.03401 * 240.74102 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6327 -2.5816 0.8945 11 6 0.3798 -2.6222 -1.2742 12 6 0.1949 -4.1535 -1.4154 13 6 1.5583 -4.7396 -0.9942 14 1 2.1730 -4.9255 -1.8749 15 8 1.3652 -5.9547 -0.2672 16 6 1.2111 -7.0915 -0.9956 17 6 1.1272 -8.3203 -0.3556 18 6 0.9711 -9.4765 -1.0956 19 6 0.8985 -9.4129 -2.4742 20 6 0.9818 -8.1869 -3.1185 21 8 0.9109 -8.1250 -4.4743 22 6 1.1433 -7.0255 -2.3785 23 6 2.2309 -3.6881 -0.0943 24 1 -0.4850 0.8401 0.0004 25 1 0.9022 -2.2148 -2.1398 26 1 -0.5819 -2.1279 -1.1375 27 1 -0.0307 -4.4169 -2.4487 28 1 -0.5936 -4.5055 -0.7501 29 1 1.1841 -8.3727 0.7216 30 1 0.9064 -10.4318 -0.5960 31 1 0.7760 -10.3180 -3.0504 32 1 0.0127 -8.0212 -4.8168 33 1 1.2125 -6.0707 -2.8784 34 1 2.4101 -4.1047 0.8970 35 1 3.1716 -3.3631 -0.5387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = -89.137608 kcal Electronic energy + Delta-G solvation = -17651.438235 eV Core-core repulsion = 14806.455745 eV Total energy + Delta-G solvation = -2844.982489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43083 -39.73285 -38.00325 -36.70839 -34.32231 -31.30757 -30.64734 -30.03678 -28.75436 -26.03197 -23.64483 -23.36282 -21.48447 -20.86650 -19.93610 -18.56178 -18.03241 -17.20992 -16.83337 -16.61725 -16.23796 -15.80969 -15.37746 -15.03251 -14.67534 -14.30923 -14.15156 -13.59283 -13.19520 -12.99898 -12.93823 -12.70865 -12.49563 -12.35859 -12.07586 -11.73483 -11.62196 -11.52104 -11.30247 -11.15774 -10.85796 -10.46848 -9.80678 -9.13690 -8.12470 -6.23201 0.25759 0.42790 1.42020 1.42892 1.53048 2.26971 2.43745 2.68118 3.18019 3.25644 3.75949 3.81648 3.93529 4.11915 4.16322 4.24759 4.36349 4.54647 4.66269 4.72839 4.82813 4.89913 4.92696 5.01622 5.10898 5.28790 5.33445 5.38170 5.43841 5.47347 5.62998 5.78128 5.85937 5.95200 6.33304 6.48236 6.83425 6.86641 7.44612 8.96081 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.046777 B = 0.004525 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.445726 B = 6185.892831 C = 6433.260068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.041 3.959 10 H -0.002 1.002 11 C -0.090 4.090 12 C -0.136 4.136 13 C 0.092 3.908 14 H 0.079 0.921 15 O -0.322 6.322 16 C 0.129 3.871 17 C -0.179 4.179 18 C -0.057 4.057 19 C -0.189 4.189 20 C 0.137 3.863 21 O -0.509 6.509 22 C -0.253 4.253 23 C -0.106 4.106 24 H 0.261 0.739 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.139 0.861 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.412 0.588 33 H 0.130 0.870 34 H 0.060 0.940 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -17.605 -5.610 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.017 0.983 11 C -0.128 4.128 12 C -0.174 4.174 13 C 0.036 3.964 14 H 0.097 0.903 15 O -0.236 6.236 16 C 0.084 3.916 17 C -0.197 4.197 18 C -0.075 4.075 19 C -0.208 4.208 20 C 0.093 3.907 21 O -0.323 6.323 22 C -0.272 4.272 23 C -0.143 4.143 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.170 0.830 32 H 0.271 0.729 33 H 0.147 0.853 34 H 0.079 0.921 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.487 -17.507 -5.375 18.320 hybrid contribution -0.300 1.529 -0.140 1.565 sum 0.187 -15.977 -5.515 16.903 Atomic orbital electron populations 1.70090 1.07269 1.27251 1.51182 1.25758 0.95661 1.02432 0.94688 0.85603 0.78727 0.79329 0.78291 1.19990 1.21034 1.19251 1.21548 0.93067 0.91779 1.50914 0.92537 1.19429 0.92768 0.92029 0.93543 0.98348 1.22171 0.99919 0.92222 0.98488 1.22904 0.96416 0.97046 1.00999 1.23185 0.96934 0.81512 0.94743 0.90279 1.86177 1.86277 1.14595 1.36563 1.19271 0.94995 0.87242 0.90136 1.20796 1.07738 0.89650 1.01545 1.21190 0.94897 0.98323 0.93052 1.21585 1.06257 0.97612 0.95310 1.18343 0.97495 0.91922 0.82985 1.84734 1.35474 1.95642 1.16434 1.21680 1.11906 1.00272 0.93385 1.22269 0.99097 0.94024 0.98938 0.93044 0.93865 0.93436 0.90535 0.91967 0.84267 0.81548 0.83036 0.72877 0.85258 0.92091 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 12.01 21.45 0.26 -53.21 16 2 C 0.01 0.75 5.33 84.65 0.45 1.20 16 3 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -29.58 8.49 25.60 0.22 -29.37 16 8 H 0.06 3.04 7.58 -2.91 -0.02 3.02 16 9 C 0.04 2.08 2.79 -10.43 -0.03 2.05 16 10 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 11 C -0.09 -4.23 5.61 31.89 0.18 -4.05 16 12 C -0.14 -5.16 6.00 31.67 0.19 -4.97 16 13 C 0.09 3.38 2.81 31.32 0.09 3.47 16 14 H 0.08 2.68 6.46 -2.39 -0.02 2.67 16 15 O -0.32 -11.52 9.71 -92.37 -0.90 -12.42 16 16 C 0.13 3.93 6.61 22.49 0.15 4.08 16 17 C -0.18 -4.41 9.98 22.38 0.22 -4.19 16 18 C -0.06 -1.07 10.04 22.24 0.22 -0.84 16 19 C -0.19 -3.69 9.98 22.38 0.22 -3.47 16 20 C 0.14 3.27 6.70 22.49 0.15 3.42 16 21 O -0.51 -10.56 13.50 -92.44 -1.25 -11.81 16 22 C -0.25 -7.19 8.67 22.46 0.19 -6.99 16 23 C -0.11 -4.48 6.18 31.36 0.19 -4.28 16 24 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.04 2.05 8.05 -2.38 -0.02 2.03 16 26 H 0.05 2.46 7.37 -2.39 -0.02 2.44 16 27 H 0.08 2.51 7.39 -2.39 -0.02 2.49 16 28 H 0.06 2.41 8.08 -2.38 -0.02 2.40 16 29 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.41 4.46 9.06 -74.06 -0.67 3.79 16 33 H 0.13 3.78 5.24 -2.91 -0.02 3.76 16 34 H 0.06 2.53 7.95 -2.39 -0.02 2.51 16 35 H 0.07 2.98 7.68 -2.39 -0.02 2.96 16 Total: -1.00 -64.82 290.74 3.02 -61.81 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.43 Total: 13.98 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 2.45 Total: -43.93 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.26 Total: -53.21 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -2.14 Total: -24.23 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.82 3.02 -61.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.331 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds