Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 C 1.34238 * 125.04180 * 85.02118 * 12 2 1 14 14 C 1.46382 * 106.88213 * 179.97438 * 13 12 2 15 15 C 1.39716 * 134.29369 * 179.97438 * 14 13 12 16 16 C 1.38364 * 118.02815 * 179.97438 * 15 14 13 17 17 F 1.35102 * 120.31826 * 179.97438 * 16 15 14 18 18 C 1.38859 * 119.36277 * 359.97438 * 16 15 14 19 19 N 1.31600 * 121.54664 * 0.02709 * 18 16 15 20 20 C 1.32630 * 121.70246 * 359.97093 * 19 18 16 21 21 N 1.36901 * 125.04163 * 264.71913 * 12 2 1 22 22 C 1.46499 * 124.99700 * 359.97438 * 21 12 2 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 27 27 H 1.08001 * 126.55886 * 0.02562 * 13 12 2 28 28 H 1.08008 * 120.98254 * 0.02562 * 15 14 13 29 29 H 1.07995 * 119.22878 * 179.97438 * 18 16 15 30 30 H 1.09004 * 109.46955 * 90.00526 * 22 21 12 31 31 H 1.09002 * 109.47220 * 210.00166 * 22 21 12 32 32 H 1.08993 * 109.46945 * 330.00266 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 6 2.0323 -0.7104 1.2305 13 6 2.1993 -2.0378 1.3399 14 6 2.7009 -2.2933 2.6912 15 6 3.0608 -3.4440 3.3970 16 6 3.5064 -3.2958 4.6985 17 9 3.8660 -4.3775 5.4237 18 6 3.5806 -2.0245 5.2521 19 7 3.2361 -0.9544 4.5679 20 6 2.8021 -1.0365 3.3174 21 7 2.3916 -0.0972 2.4005 22 6 2.3449 1.3472 2.6410 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1612 -3.4844 27 1 2.0022 -2.7761 0.5766 28 1 2.9938 -4.4204 2.9400 29 1 3.9284 -1.9113 6.2682 30 1 1.3684 1.6172 3.0432 31 1 3.1207 1.6219 3.3556 32 1 2.5107 1.8772 1.7031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259988991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = 19.768078 kcal Electronic energy + Delta-G solvation = -17489.801076 eV Core-core repulsion = 14558.373537 eV Total energy + Delta-G solvation = -2931.427538 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.64426 -41.19208 -37.73042 -34.29859 -33.03411 -31.02327 -30.63486 -27.99750 -25.94968 -25.23873 -23.57579 -21.98307 -21.22827 -19.14702 -17.39366 -17.14978 -16.30460 -15.89347 -15.65591 -15.07477 -14.89347 -14.29246 -14.07581 -13.10728 -12.98949 -12.89967 -12.68897 -12.47098 -12.14890 -11.85046 -11.76976 -11.28745 -11.03564 -10.71574 -10.50890 -10.29624 -9.95191 -9.92695 -9.24241 -9.10639 -8.54338 -7.82651 -7.34260 -6.18082 -4.24671 1.21391 1.46204 2.95488 3.21850 3.29742 3.31431 3.36657 4.02834 4.31727 4.34307 4.61916 4.93857 5.10982 5.14274 5.15191 5.51054 5.57322 5.78043 5.82466 5.89210 6.05450 6.28756 6.52482 6.57221 6.80460 6.86109 6.93042 7.01786 7.37933 7.55190 7.60440 7.75851 7.90695 8.11330 8.24184 8.77590 9.41302 10.88711 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031538 B = 0.005991 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.597888 B = 4672.923741 C = 5280.730558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.095 3.905 3 H 0.040 0.960 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.156 3.844 13 C -0.210 4.210 14 C -0.117 4.117 15 C -0.073 4.073 16 C 0.005 3.995 17 F -0.141 7.141 18 C 0.093 3.907 19 N -0.471 5.471 20 C 0.264 3.736 21 N -0.471 5.471 22 C 0.080 3.920 23 H 0.008 0.992 24 H 0.092 0.908 25 H 0.035 0.965 26 H 0.263 0.737 27 H 0.154 0.846 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -2.889 10.011 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.076 3.924 3 H 0.058 0.942 4 C -0.549 4.549 5 H 0.085 0.915 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.049 3.951 13 C -0.233 4.233 14 C -0.125 4.125 15 C -0.100 4.100 16 C -0.018 4.018 17 F -0.120 7.120 18 C -0.074 4.074 19 N -0.183 5.183 20 C 0.031 3.969 21 N -0.157 5.157 22 C -0.061 4.061 23 H 0.028 0.972 24 H 0.111 0.889 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.171 0.829 28 H 0.159 0.841 29 H 0.180 0.820 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.228 -1.588 10.259 10.618 hybrid contribution 0.337 -1.365 -0.994 1.722 sum 2.565 -2.953 9.265 10.057 Atomic orbital electron populations 1.21775 0.96409 1.00084 1.00592 1.17720 0.93225 0.95458 0.86040 0.94165 1.21107 1.31700 1.12928 0.89203 0.91503 1.24934 0.94820 0.94948 0.99123 1.69870 1.36381 1.22787 1.23742 0.86427 0.78701 0.79735 0.82580 1.19541 1.20868 1.20960 1.21754 0.94320 0.92682 0.86365 1.21383 1.12128 0.95318 0.94470 1.19858 1.03871 0.91942 0.96844 1.20832 0.98002 0.99053 0.92073 1.18269 1.07528 0.84487 0.91549 1.91452 1.90135 1.53315 1.77116 1.22254 0.99957 0.85522 0.99705 1.66386 1.13594 1.32503 1.05795 1.18405 1.01191 0.87985 0.89290 1.43917 1.55470 1.06038 1.10295 1.21926 1.02720 0.77992 1.03501 0.97244 0.88949 0.94603 0.92737 0.82870 0.84099 0.82003 0.91556 0.90254 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.95 37.16 0.33 -2.58 16 2 C 0.09 2.18 2.45 -92.92 -0.23 1.96 16 3 H 0.04 0.97 6.76 -51.93 -0.35 0.62 16 4 C -0.51 -12.93 8.21 -34.44 -0.28 -13.21 16 5 H 0.07 1.69 6.75 -52.48 -0.35 1.33 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.55 11.32 55.43 0.63 -22.92 16 8 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.16 3.26 5.77 -81.74 -0.47 2.79 16 13 C -0.21 -4.23 9.90 -37.72 -0.37 -4.61 16 14 C -0.12 -2.20 6.39 -105.11 -0.67 -2.87 16 15 C -0.07 -1.17 10.21 -38.98 -0.40 -1.57 16 16 C 0.01 0.08 7.33 -39.31 -0.29 -0.21 16 17 F -0.14 -2.01 17.28 2.25 0.04 -1.97 16 18 C 0.09 1.38 11.13 -17.42 -0.19 1.18 16 19 N -0.47 -8.19 10.38 -12.20 -0.13 -8.32 16 20 C 0.26 5.02 7.90 -155.62 -1.23 3.79 16 21 N -0.47 -8.99 3.17 -119.02 -0.38 -9.37 16 22 C 0.08 1.24 10.85 59.85 0.65 1.89 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 27 H 0.15 3.01 7.57 -52.49 -0.40 2.61 16 28 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.38 6.80 -51.93 -0.35 1.02 16 LS Contribution 278.36 15.07 4.19 4.19 Total: -1.00 -27.28 278.36 -7.36 -34.64 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -3.44 Total: 0.55 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.25 Total: -11.90 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.12 Total: -40.61 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.28 -7.36 -34.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.407 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds