Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 C 1.34238 * 125.04180 * 85.02118 * 12 2 1 14 14 C 1.46382 * 106.88213 * 179.97438 * 13 12 2 15 15 C 1.39716 * 134.29369 * 179.97438 * 14 13 12 16 16 C 1.38364 * 118.02815 * 179.97438 * 15 14 13 17 17 F 1.35102 * 120.31826 * 179.97438 * 16 15 14 18 18 C 1.38859 * 119.36277 * 359.97438 * 16 15 14 19 19 N 1.31600 * 121.54664 * 0.02709 * 18 16 15 20 20 C 1.32630 * 121.70246 * 359.97093 * 19 18 16 21 21 N 1.36901 * 125.04163 * 264.71913 * 12 2 1 22 22 C 1.46499 * 124.99700 * 359.97438 * 21 12 2 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 27 27 H 1.08001 * 126.55886 * 0.02562 * 13 12 2 28 28 H 1.08008 * 120.98254 * 0.02562 * 15 14 13 29 29 H 1.07995 * 119.22878 * 179.97438 * 18 16 15 30 30 H 1.09004 * 109.46955 * 90.00526 * 22 21 12 31 31 H 1.09002 * 109.47220 * 210.00166 * 22 21 12 32 32 H 1.08993 * 109.46945 * 330.00266 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 6 2.0323 -0.7104 1.2305 13 6 2.1993 -2.0378 1.3399 14 6 2.7009 -2.2933 2.6912 15 6 3.0608 -3.4440 3.3970 16 6 3.5064 -3.2958 4.6985 17 9 3.8660 -4.3775 5.4237 18 6 3.5806 -2.0245 5.2521 19 7 3.2361 -0.9544 4.5679 20 6 2.8021 -1.0365 3.3174 21 7 2.3916 -0.0972 2.4005 22 6 2.3449 1.3472 2.6410 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1612 -3.4844 27 1 2.0022 -2.7761 0.5766 28 1 2.9938 -4.4204 2.9400 29 1 3.9284 -1.9113 6.2682 30 1 1.3684 1.6172 3.0432 31 1 3.1207 1.6219 3.3556 32 1 2.5107 1.8772 1.7031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259988991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = 6.836822 kcal Electronic energy + Delta-G solvation = -17490.361817 eV Core-core repulsion = 14558.373537 eV Total energy + Delta-G solvation = -2931.988280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.81554 -42.57941 -39.09645 -36.09571 -34.39432 -32.84129 -31.93211 -29.43064 -27.42090 -27.03185 -25.05890 -23.31705 -22.78676 -20.69317 -18.73821 -18.50196 -18.00235 -17.33449 -16.93126 -16.69761 -16.23783 -15.90189 -15.30463 -14.74398 -14.37459 -14.15907 -14.12525 -13.96581 -13.63185 -13.45018 -13.13787 -12.99831 -12.83207 -12.43382 -12.16544 -12.11955 -11.72017 -11.25157 -10.97865 -10.55974 -10.48682 -9.16745 -8.81767 -8.13307 -6.25233 -0.09852 0.17847 1.43665 1.46804 1.55837 1.62166 1.79785 2.45373 2.71011 3.08500 3.17747 3.37075 3.69850 3.76472 3.92732 4.25044 4.29636 4.38291 4.54145 4.64624 4.75540 4.80948 4.89146 5.03084 5.09447 5.15449 5.38322 5.53080 5.66392 5.83580 5.90944 6.09254 6.24031 6.34705 6.80457 6.86255 7.43152 8.92803 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031538 B = 0.005991 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.597888 B = 4672.923741 C = 5280.730558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.099 3.901 3 H 0.022 0.978 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.283 1.283 12 C 0.132 3.868 13 C -0.214 4.214 14 C -0.141 4.141 15 C -0.068 4.068 16 C 0.011 3.989 17 F -0.132 7.132 18 C 0.109 3.891 19 N -0.483 5.483 20 C 0.249 3.751 21 N -0.476 5.476 22 C 0.077 3.923 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.263 0.737 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.203 0.797 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -3.910 11.560 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 H 0.040 0.960 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.209 1.209 12 C 0.024 3.976 13 C -0.238 4.238 14 C -0.149 4.149 15 C -0.095 4.095 16 C -0.013 4.013 17 F -0.111 7.111 18 C -0.059 4.059 19 N -0.195 5.195 20 C 0.018 3.982 21 N -0.161 5.161 22 C -0.064 4.064 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.167 0.833 28 H 0.180 0.820 29 H 0.220 0.780 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.024 -2.599 11.808 12.463 hybrid contribution 0.146 -1.124 -1.305 1.729 sum 3.171 -3.723 10.503 11.585 Atomic orbital electron populations 1.21605 0.96222 0.99699 1.00227 1.17492 0.93409 0.94423 0.86700 0.95986 1.21374 1.31507 1.12850 0.90395 0.92011 1.25612 0.95092 0.95611 1.01585 1.69975 1.37272 1.23831 1.24235 0.85542 0.78171 0.78725 0.79478 1.19240 1.20541 1.20854 1.21320 0.96537 0.93006 0.86698 1.21430 1.11901 0.95093 0.95351 1.19923 1.05553 0.93031 0.96390 1.21098 0.96713 0.99257 0.92410 1.18259 1.06881 0.84937 0.91182 1.91487 1.89920 1.52898 1.76752 1.22972 0.97311 0.84789 1.00802 1.66508 1.14371 1.33485 1.05147 1.18605 1.01679 0.87988 0.89970 1.43983 1.55197 1.07144 1.09799 1.22094 1.04103 0.76416 1.03745 0.95536 0.91207 0.94870 0.92721 0.83281 0.82008 0.78036 0.90226 0.88630 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.95 71.98 0.64 -4.80 16 2 C 0.10 4.67 2.45 -12.29 -0.03 4.64 16 3 H 0.02 1.11 6.76 -2.39 -0.02 1.09 16 4 C -0.52 -26.95 8.21 25.60 0.21 -26.74 16 5 H 0.06 3.17 6.75 -2.91 -0.02 3.15 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -49.24 11.32 21.44 0.24 -48.99 16 8 Si 0.95 41.52 29.54 68.60 2.03 43.54 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.13 5.59 5.77 40.85 0.24 5.82 16 13 C -0.21 -8.68 9.90 23.48 0.23 -8.45 16 14 C -0.14 -5.15 6.39 -20.18 -0.13 -5.28 16 15 C -0.07 -2.03 10.21 22.66 0.23 -1.80 16 16 C 0.01 0.29 7.33 22.45 0.16 0.45 16 17 F -0.13 -3.25 17.28 44.97 0.78 -2.47 16 18 C 0.11 2.84 11.13 84.88 0.95 3.79 16 19 N -0.48 -15.60 10.38 -192.52 -2.00 -17.60 16 20 C 0.25 9.17 7.90 133.89 1.06 10.23 16 21 N -0.48 -18.00 3.17 -530.47 -1.68 -19.69 16 22 C 0.08 2.34 10.85 127.77 1.39 3.73 16 23 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 25 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.15 5.96 7.57 -2.91 -0.02 5.94 16 28 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 29 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.08 2.64 6.80 -2.39 -0.02 2.62 16 Total: -1.00 -57.68 278.36 5.90 -51.78 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.14 Total: 10.32 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.40 Total: -16.90 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -3.44 Total: -86.28 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -57.68 5.90 -51.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.620 kcal (2) G-P(sol) polarization free energy of solvation -57.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds