Wall clock time and date at job start Mon Mar 30 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47640 * 2 1 4 4 C 1.50700 * 109.46846 * 239.99500 * 2 1 3 5 5 H 1.08001 * 120.00537 * 245.46101 * 4 2 1 6 6 C 1.37880 * 119.99870 * 65.46531 * 4 2 1 7 7 N 1.31518 * 119.99924 * 9.56766 * 6 4 2 8 8 Si 1.86799 * 119.99940 * 189.56530 * 6 4 2 9 9 H 1.48505 * 109.47172 * 84.99337 * 8 6 4 10 10 H 1.48501 * 109.47224 * 204.99576 * 8 6 4 11 11 H 1.48503 * 109.47299 * 324.99277 * 8 6 4 12 12 C 1.50707 * 109.47385 * 119.99857 * 2 1 3 13 13 N 1.30232 * 126.10166 * 59.99328 * 12 2 1 14 14 N 1.39872 * 110.08736 * 180.02562 * 13 12 2 15 15 C 1.46493 * 125.46476 * 180.02562 * 14 13 12 16 16 C 1.37048 * 109.07083 * 0.02562 * 14 13 12 17 17 C 1.39281 * 133.78816 * 179.97438 * 16 14 13 18 18 C 1.37790 * 119.71779 * 180.27685 * 17 16 14 19 19 F 1.35098 * 119.69314 * 179.72513 * 18 17 16 20 20 C 1.39203 * 120.61243 * 359.48364 * 18 17 16 21 21 C 1.36402 * 120.60835 * 0.49797 * 20 18 17 22 22 C 1.39935 * 119.81421 * 359.76723 * 21 20 18 23 23 H 1.09008 * 109.46818 * 303.51070 * 1 2 3 24 24 H 1.09002 * 109.47217 * 63.51137 * 1 2 3 25 25 H 1.08996 * 109.47195 * 183.51436 * 1 2 3 26 26 H 0.96996 * 119.99580 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47584 * 270.00450 * 15 14 13 28 28 H 1.09006 * 109.47385 * 30.00235 * 15 14 13 29 29 H 1.08997 * 109.47477 * 149.99902 * 15 14 13 30 30 H 1.07994 * 120.13860 * 0.02562 * 17 16 14 31 31 H 1.08003 * 119.69358 * 180.24429 * 20 18 17 32 32 H 1.08004 * 120.08972 * 179.78314 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.5784 -1.6372 -1.1338 6 6 1.7945 -0.1775 -2.4796 7 7 1.2994 1.0356 -2.5936 8 14 2.1756 -1.1784 -4.0101 9 1 1.0234 -2.0612 -4.3239 10 1 2.4225 -0.2619 -5.1522 11 1 3.3839 -2.0078 -3.7710 12 6 2.0324 -0.7104 1.2305 13 7 1.7920 -1.9490 1.5534 14 7 2.4217 -2.2610 2.7628 15 6 2.3739 -3.5616 3.4351 16 6 3.0905 -1.1547 3.2178 17 6 3.8698 -0.8945 4.3425 18 6 4.4144 0.3585 4.5212 19 9 5.1656 0.6120 5.6151 20 6 4.2020 1.3642 3.5824 21 6 3.4424 1.1303 2.4739 22 6 2.8744 -0.1328 2.2735 23 1 -0.3633 0.5674 0.8569 24 1 -0.3634 0.4584 -0.9198 25 1 -0.3633 -1.0257 0.0630 26 1 1.1326 1.4107 -3.4724 27 1 1.5226 -3.5880 4.1153 28 1 2.2692 -4.3516 2.6913 29 1 3.2943 -3.7133 3.9989 30 1 4.0431 -1.6703 5.0735 31 1 4.6392 2.3399 3.7353 32 1 3.2801 1.9177 1.7527 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259990818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:44 Heat of formation + Delta-G solvation = 16.258341 kcal Electronic energy + Delta-G solvation = -17470.472971 eV Core-core repulsion = 14538.893239 eV Total energy + Delta-G solvation = -2931.579732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.93338 -42.17552 -37.91424 -36.59217 -34.28899 -32.07093 -31.43164 -30.33347 -27.30834 -27.06648 -24.43661 -23.44589 -22.89833 -20.44188 -18.72464 -18.09694 -17.94855 -17.35236 -16.76290 -16.58988 -16.14764 -15.96838 -15.13384 -14.83044 -14.62962 -14.25219 -14.00410 -13.73047 -13.50665 -13.33228 -12.99369 -12.78251 -12.47097 -12.29890 -12.21576 -12.15099 -11.76262 -11.39937 -11.13723 -10.74352 -10.46959 -9.48236 -8.82330 -8.14958 -6.22895 -0.16082 0.41643 1.41805 1.42796 1.50526 1.54943 1.59016 2.44077 2.66198 3.15546 3.18634 3.54733 3.64747 3.76335 4.06968 4.27573 4.37148 4.44036 4.59188 4.65555 4.71273 4.84818 4.93160 5.02069 5.09687 5.12080 5.33041 5.51835 5.57173 5.76322 5.85208 5.91709 6.16674 6.25036 6.79864 6.85385 7.42268 8.92995 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027213 B = 0.006355 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.675461 B = 4405.077481 C = 4869.723971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.112 3.888 3 H 0.039 0.961 4 C -0.523 4.523 5 H 0.041 0.959 6 C 0.026 3.974 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.132 3.868 13 N -0.286 5.286 14 N -0.422 5.422 15 C 0.104 3.896 16 C 0.138 3.862 17 C -0.181 4.181 18 C 0.144 3.856 19 F -0.133 7.133 20 C -0.193 4.193 21 C -0.009 4.009 22 C -0.216 4.216 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.266 0.734 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -2.803 13.846 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.057 0.943 4 C -0.561 4.561 5 H 0.059 0.941 6 C -0.174 4.174 7 N -0.549 5.549 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.201 1.201 12 C -0.045 4.045 13 N -0.098 5.098 14 N -0.209 5.209 15 C -0.036 4.036 16 C 0.021 3.979 17 C -0.204 4.204 18 C 0.122 3.878 19 F -0.111 7.111 20 C -0.213 4.213 21 C -0.030 4.030 22 C -0.224 4.224 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.179 0.821 31 H 0.182 0.818 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.951 -3.980 13.513 14.630 hybrid contribution 0.508 0.161 -0.655 0.844 sum 4.458 -3.819 12.858 14.135 Atomic orbital electron populations 1.21540 0.96776 0.99035 0.99800 1.17317 0.93038 0.94363 0.86124 0.94280 1.21116 1.36246 1.07612 0.91159 0.94069 1.25558 0.95048 0.95509 1.01333 1.70023 1.45366 1.14760 1.24719 0.85701 0.78517 0.78859 0.79367 1.20004 1.20269 1.20122 1.24318 0.93985 0.90596 0.95588 1.76640 1.18458 1.16524 0.98173 1.48634 1.43433 1.10833 1.17978 1.22028 1.04631 0.79656 0.97286 1.18652 0.95678 0.88183 0.95358 1.19884 1.03893 0.97995 0.98652 1.17310 0.92555 0.93627 0.84293 1.91498 1.73582 1.94616 1.51414 1.20780 1.04703 1.00882 0.94898 1.20413 0.91981 0.94303 0.96256 1.20341 1.07521 0.97056 0.97497 0.94856 0.92849 0.95012 0.92501 0.89927 0.89489 0.87360 0.82053 0.81787 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.49 9.05 71.98 0.65 -4.84 16 2 C 0.11 5.73 2.61 -12.29 -0.03 5.70 16 3 H 0.04 2.09 8.08 -2.39 -0.02 2.07 16 4 C -0.52 -29.32 8.46 25.60 0.22 -29.10 16 5 H 0.04 2.39 7.76 -2.91 -0.02 2.37 16 6 C 0.03 1.40 5.17 84.65 0.44 1.84 16 7 N -0.91 -51.23 12.16 21.45 0.26 -50.97 16 8 Si 0.95 43.81 29.55 68.60 2.03 45.84 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 C 0.13 6.13 5.88 44.80 0.26 6.39 16 13 N -0.29 -12.80 12.40 -43.67 -0.54 -13.34 16 14 N -0.42 -14.95 4.05 -361.05 -1.46 -16.41 16 15 C 0.10 2.37 11.40 127.77 1.46 3.82 16 16 C 0.14 4.77 6.87 39.21 0.27 5.04 16 17 C -0.18 -4.90 9.98 22.41 0.22 -4.68 16 18 C 0.14 3.80 7.28 22.40 0.16 3.96 16 19 F -0.13 -3.20 17.25 44.97 0.78 -2.43 16 20 C -0.19 -5.15 9.94 22.07 0.22 -4.93 16 21 C -0.01 -0.30 10.05 22.25 0.22 -0.08 16 22 C -0.22 -8.56 6.32 -20.24 -0.13 -8.69 16 23 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.05 2.76 6.83 -2.39 -0.02 2.74 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.11 1.76 8.13 -2.39 -0.02 1.74 16 30 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -64.54 285.61 6.15 -58.39 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.12 Total: 4.47 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 3.96 Total: -25.55 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.74 Total: -80.72 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.54 6.15 -58.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.649 kcal (2) G-P(sol) polarization free energy of solvation -64.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds